mRNA_S-dermatodea_contig10800.543.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10800.543.1
Unique NamemRNA_S-dermatodea_contig10800.543.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10800.543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10800contigS-dermatodea_contig10800:170..741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size572
Cds size474
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924174.6139293-UTR-S-dermatodea_contig10800:169..2671622924174.6139293-UTR-S-dermatodea_contig10800:169..267Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10800 170..267 +
1694079069.0160758-UTR-S-dermatodea_contig10800:169..2671694079069.0160758-UTR-S-dermatodea_contig10800:169..267Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10800 170..267 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924174.6232781-CDS-S-dermatodea_contig10800:267..7411622924174.6232781-CDS-S-dermatodea_contig10800:267..741Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10800 268..741 +
1694079069.024701-CDS-S-dermatodea_contig10800:267..7411694079069.024701-CDS-S-dermatodea_contig10800:267..741Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10800 268..741 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10800.543.1prot_S-dermatodea_contig10800.543.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10800 268..741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10800.543.1

>prot_S-dermatodea_contig10800.543.1 ID=prot_S-dermatodea_contig10800.543.1|Name=mRNA_S-dermatodea_contig10800.543.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=158bp
MAKYFGFFHPKLYLVWHGTQIRSRAHQQHTAPGRTTNTYTCRHYTNESQK
IEPTLCTLSTKTYITLDRAMHHADTRQEKLPKGQRTHTHKQATHQLSRTR
SLLSPTTPCALRRFFLLSSNSHQRFDITLRYGRSSSRGVTRGRSRRSTKR
PCSRGQS*
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mRNA from alignment at S-dermatodea_contig10800:170..741+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10800.543.1 ID=mRNA_S-dermatodea_contig10800.543.1|Name=mRNA_S-dermatodea_contig10800.543.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=572bp|location=Sequence derived from alignment at S-dermatodea_contig10800:170..741+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCTCCCTCACAGTAGCTACAGTCAGTAGCGCCCCCCCCCCTCCCCCGCGA
AGTAGCCACAGTCAGTAGCGTCTTCGTCAAGAGCACCACTCGAGCACGAT
GGCGAAATACTTTGGTTTTTTCCACCCCAAGCTTTACCTCGTGTGGCATG
GCACACAAATCCGTTCCCGTGCCCACCAGCAGCACACGGCGCCCGGTCGC
ACAACCAACACATACACATGTCGACACTACACCAACGAAAGTCAAAAGAT
CGAACCAACACTCTGTACTCTGTCCACAAAAACATATATCACGCTCGACC
GCGCAATGCATCATGCCGACACAAGACAGGAAAAACTGCCAAAAGGACAA
AGAACACATACACACAAACAAGCCACACATCAATTATCACGGACGCGCAG
CCTCCTTTCCCCGACCACCCCCTGCGCGCTACGCCGTTTCTTCTTGCTCT
CCTCCAACTCCCACCAGCGCTTCGACATAACCCTCCGGTACGGCCGCAGC
AGCAGCCGGGGGGTAACCCGCGGGCGCAGCCGGCGCAGCACCAAACGACC
CTGCAGCCGCGGGCAAAGCTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10800:170..741+

>mRNA_S-dermatodea_contig10800.543.1 ID=mRNA_S-dermatodea_contig10800.543.1|Name=mRNA_S-dermatodea_contig10800.543.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at S-dermatodea_contig10800:170..741+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGAAATACTTTGGTTTTTTCCACCCCAAGCTTTACCTCGTGTGGCA
TGGCACACAAATCCGTTCCCGTGCCCACCAGCAGCACACGGCGCCCGGTC
GCACAACCAACACATACACATGTCGACACTACACCAACGAAAGTCAAAAG
ATCGAACCAACACTCTGTACTCTGTCCACAAAAACATATATCACGCTCGA
CCGCGCAATGCATCATGCCGACACAAGACAGGAAAAACTGCCAAAAGGAC
AAAGAACACATACACACAAACAAGCCACACATCAATTATCACGGACGCGC
AGCCTCCTTTCCCCGACCACCCCCTGCGCGCTACGCCGTTTCTTCTTGCT
CTCCTCCAACTCCCACCAGCGCTTCGACATAACCCTCCGGTACGGCCGCA
GCAGCAGCCGGGGGGTAACCCGCGGGCGCAGCCGGCGCAGCACCAAACGA
CCCTGCAGCCGCGGGCAAAGCTGAATGGCGAAATACTTTGGTTTTTTCCA
CCCCAAGCTTTACCTCGTGTGGCATGGCACACAAATCCGTTCCCGTGCCC
ACCAGCAGCACACGGCGCCCGGTCGCACAACCAACACATACACATGTCGA
CACTACACCAACGAAAGTCAAAAGATCGAACCAACACTCTGTACTCTGTC
CACAAAAACATATATCACGCTCGACCGCGCAATGCATCATGCCGACACAA
GACAGGAAAAACTGCCAAAAGGACAAAGAACACATACACACAAACAAGCC
ACACATCAATTATCACGGACGCGCAGCCTCCTTTCCCCGACCACCCCCTG
CGCGCTACGCCGTTTCTTCTTGCTCTCCTCCAACTCCCACCAGCGCTTCG
ACATAACCCTCCGGTACGGCCGCAGCAGCAGCCGGGGGGTAACCCGCGGG
CGCAGCCGGCGCAGCACCAAACGACCCTGCAGCCGCGGGCAAAGCTGA
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