mRNA_S-dermatodea_contig10795.534.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10795.534.1
Unique NamemRNA_S-dermatodea_contig10795.534.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10795.534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10795contigS-dermatodea_contig10795:6877..7117 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size192
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10795.534.1prot_S-dermatodea_contig10795.534.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10795 6916..7117 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924173.2804153-UTR-S-dermatodea_contig10795:6876..69151622924173.2804153-UTR-S-dermatodea_contig10795:6876..6915Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10795 6877..6915 -
1694079067.8533237-UTR-S-dermatodea_contig10795:6876..69151694079067.8533237-UTR-S-dermatodea_contig10795:6876..6915Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10795 6877..6915 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924173.288574-CDS-S-dermatodea_contig10795:6915..70431622924173.288574-CDS-S-dermatodea_contig10795:6915..7043Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10795 6916..7043 -
1694079067.8743558-CDS-S-dermatodea_contig10795:6915..70431694079067.8743558-CDS-S-dermatodea_contig10795:6915..7043Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10795 6916..7043 -
1622924173.2966938-CDS-S-dermatodea_contig10795:7053..71171622924173.2966938-CDS-S-dermatodea_contig10795:7053..7117Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10795 7054..7117 -
1694079067.8864348-CDS-S-dermatodea_contig10795:7053..71171694079067.8864348-CDS-S-dermatodea_contig10795:7053..7117Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10795 7054..7117 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10795.534.1

>prot_S-dermatodea_contig10795.534.1 ID=prot_S-dermatodea_contig10795.534.1|Name=mRNA_S-dermatodea_contig10795.534.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=64bp
CITSFSELSCLPSEVLGCWSGPCACTSTAVAAAVICSRAAPSPPYRETRL
PRPHLHPETIVRA*
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mRNA from alignment at S-dermatodea_contig10795:6877..7117-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10795.534.1 ID=mRNA_S-dermatodea_contig10795.534.1|Name=mRNA_S-dermatodea_contig10795.534.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=241bp|location=Sequence derived from alignment at S-dermatodea_contig10795:6877..7117- (Saccorhiza dermatodea SderLu1190fm monoicous)
TGCATCACATCGTTCAGCGAGCTCAGCTGCTTGCCCTCGGAGGTGCTTGG
ATGCTGGTCGGGTCGTCGGGTCAGCCTGCGCTTGCACGAGCACGGCAGTG
GCGGCGGCAGTGATTTGTAGTCGAGCGGCTCCTTCTCCTCCGTACCGGGA
GACCCGGCTTCCAAGACCCCATTTGCATCCAGAGACGATAGTTAGGGCTT
GATCTCCTCCTCTGAGCCTCCCCCCGACCCAGCACCCGAGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10795:6877..7117-

>mRNA_S-dermatodea_contig10795.534.1 ID=mRNA_S-dermatodea_contig10795.534.1|Name=mRNA_S-dermatodea_contig10795.534.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at S-dermatodea_contig10795:6877..7117- (Saccorhiza dermatodea SderLu1190fm monoicous)
TGCATCACATCGTTCAGCGAGCTCAGCTGCTTGCCCTCGGAGGTGCTTGG
ATGCTGGTCGGGTCTGCATCACATCGTTCAGCGAGCTCAGCTGCTTGCCC
TCGGAGGTGCTTGGATGCTGGTCGGGTCCCTGCGCTTGCACGAGCACGGC
AGTGGCGGCGGCAGTGATTTGTAGTCGAGCGGCTCCTTCTCCTCCGTACC
GGGAGACCCGGCTTCCAAGACCCCATTTGCATCCAGAGACGATAGTTAGG
GCTTGACCTGCGCTTGCACGAGCACGGCAGTGGCGGCGGCAGTGATTTGT
AGTCGAGCGGCTCCTTCTCCTCCGTACCGGGAGACCCGGCTTCCAAGACC
CCATTTGCATCCAGAGACGATAGTTAGGGCTTGA
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