mRNA_S-dermatodea_contig10794.533.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10794.533.1
Unique NamemRNA_S-dermatodea_contig10794.533.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10794.533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10794contigS-dermatodea_contig10794:5925..6393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size469
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924173.2424161-CDS-S-dermatodea_contig10794:5924..62391622924173.2424161-CDS-S-dermatodea_contig10794:5924..6239Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10794 5925..6239 +
1694079067.8325253-CDS-S-dermatodea_contig10794:5924..62391694079067.8325253-CDS-S-dermatodea_contig10794:5924..6239Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10794 5925..6239 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924173.2528546-UTR-S-dermatodea_contig10794:6239..63931622924173.2528546-UTR-S-dermatodea_contig10794:6239..6393Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10794 6240..6393 +
1694079067.8420079-UTR-S-dermatodea_contig10794:6239..63931694079067.8420079-UTR-S-dermatodea_contig10794:6239..6393Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10794 6240..6393 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10794.533.1prot_S-dermatodea_contig10794.533.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10794 5925..6239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10794.533.1

>prot_S-dermatodea_contig10794.533.1 ID=prot_S-dermatodea_contig10794.533.1|Name=mRNA_S-dermatodea_contig10794.533.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=105bp
RGEWVDCCRPQTFGRLGDGTTERERDAEQDGRAPICVAPHHPRGRYIHTG
TLIIYLVKLLRGAEIFAGNDSVFRQDEVPPVSSVLYFRNLSTECAARRDS
CCCT*
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mRNA from alignment at S-dermatodea_contig10794:5925..6393+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10794.533.1 ID=mRNA_S-dermatodea_contig10794.533.1|Name=mRNA_S-dermatodea_contig10794.533.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=469bp|location=Sequence derived from alignment at S-dermatodea_contig10794:5925..6393+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGAGGAGAGTGGGTTGATTGTTGCCGCCCACAGACTTTTGGTCGACTAGG
CGACGGCACCACTGAGAGGGAGAGGGATGCAGAGCAAGACGGGCGGGCGC
CTATCTGTGTTGCACCCCATCACCCTCGCGGGCGCTACATACATACTGGT
ACTTTGATAATTTACCTGGTTAAACTCTTGCGCGGGGCGGAGATTTTCGC
AGGCAATGATTCGGTGTTTCGGCAGGATGAAGTGCCACCGGTTTCGAGTG
TTCTTTACTTTAGGAATCTCTCCACAGAGTGTGCTGCTCGAAGAGATAGT
TGTTGTTGCACCTAAGGTTAGTATGCGTCGGCGCGAGGATGAGGAATATG
ATAGCGGAAGGAGTTGCTGGTACCGTCTCTGACAGGTTCCTCGTCTACGC
CTTGCACGCATCGCAGTAAATATAATAGTGGTAGGGGATATCCCACTGCA
CTTACTAGTAGTATTCCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10794:5925..6393+

>mRNA_S-dermatodea_contig10794.533.1 ID=mRNA_S-dermatodea_contig10794.533.1|Name=mRNA_S-dermatodea_contig10794.533.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at S-dermatodea_contig10794:5925..6393+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGAGGAGAGTGGGTTGATTGTTGCCGCCCACAGACTTTTGGTCGACTAGG
CGACGGCACCACTGAGAGGGAGAGGGATGCAGAGCAAGACGGGCGGGCGC
CTATCTGTGTTGCACCCCATCACCCTCGCGGGCGCTACATACATACTGGT
ACTTTGATAATTTACCTGGTTAAACTCTTGCGCGGGGCGGAGATTTTCGC
AGGCAATGATTCGGTGTTTCGGCAGGATGAAGTGCCACCGGTTTCGAGTG
TTCTTTACTTTAGGAATCTCTCCACAGAGTGTGCTGCTCGAAGAGATAGT
TGTTGTTGCACCTAACGAGGAGAGTGGGTTGATTGTTGCCGCCCACAGAC
TTTTGGTCGACTAGGCGACGGCACCACTGAGAGGGAGAGGGATGCAGAGC
AAGACGGGCGGGCGCCTATCTGTGTTGCACCCCATCACCCTCGCGGGCGC
TACATACATACTGGTACTTTGATAATTTACCTGGTTAAACTCTTGCGCGG
GGCGGAGATTTTCGCAGGCAATGATTCGGTGTTTCGGCAGGATGAAGTGC
CACCGGTTTCGAGTGTTCTTTACTTTAGGAATCTCTCCACAGAGTGTGCT
GCTCGAAGAGATAGTTGTTGTTGCACCTAA
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