mRNA_S-dermatodea_contig10779.528.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10779.528.1
Unique NamemRNA_S-dermatodea_contig10779.528.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10779.528.1 vs. uniprot
Match: D7FNU4_ECTSI (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNU4_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 3.090e-37
Identity = 71/97 (73.20%), Postives = 78/97 (80.41%), Query Frame = 1 
Query:    1 QGPAVSLVAVQTMLKMMKNMAAKPHEDKFKKIRLANPGFQRKVGGIDGGLEVMIAAGFSLETDGEEPILQHGPCDPAPLRLRVAIQKLDQVEARLNN 291
            Q P VSL AV TMLKMMKNM AK  +DKFK+IRL N  F  KVGGIDGGLEVM AAGFSL+TDG+EP+LQHGPCDP PLRL VAI+KL Q EA L +
Sbjct:  276 QEPGVSLTAVTTMLKMMKNMTAKSSDDKFKRIRLGNANFNSKVGGIDGGLEVMTAAGFSLQTDGDEPVLQHGPCDPVPLRLTVAIRKLAQAEAMLKD 372
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BLAST of mRNA_S-dermatodea_contig10779.528.1 vs. uniprot
Match: A0A7S2US51_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2US51_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.640e-10
Identity = 32/67 (47.76%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:    1 QGPAVSLVAVQTMLKMMKNMAAKPHEDKFKKIRLANPGFQRKVGGIDGGLEVMIAAGFSLETDGEEP 201
            QG   S+ A++T+ K++KN+   P E+KF++IRL N  F  KV  I GG+E+M A GF+++T GEEP
Sbjct:   17 QGLDASVNAMKTVSKLVKNIIKTPEEEKFRRIRLNNQAFNSKVVSIQGGMELMQAIGFNVDTTGEEP 83
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BLAST of mRNA_S-dermatodea_contig10779.528.1 vs. uniprot
Match: A0A7S2DP17_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DP17_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.040e-8
Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:    1 QGPAVSLVAVQTMLKMMKNMAAKPHEDKFKKIRLANPGFQRKVGGIDGGLEVMIAAGFSLETDGEEPILQHGPCDPAPLRLRVAIQKL 264
            Q P ++  AV T+LK++ N+  K  ++K  ++R+AN  F +KV  ++GG++ M+AAGF+L  D EE +L +      P  L+ AI +L
Sbjct:  289 QPPQIAKEAVTTLLKLLNNLETKFEDEKVHRVRVANKTFAKKVASVNGGIDFMVAAGFTLTEDAEETVLVYPTGLQPPPILQHAISQL 376
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BLAST of mRNA_S-dermatodea_contig10779.528.1 vs. uniprot
Match: A0A7S3JPU7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JPU7_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.540e-8
Identity = 33/70 (47.14%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:    1 QGPAVSLVAVQTMLKMMKNMAAKPHEDKFKKIRLANPGFQRKVGGIDGGLEVMIAAGFSLETDGEEPILQ 210
            +G       V T+LK++ N+  K  E KF+++RLAN   Q K+  I+GGLE++IAAGF L+ DG+E ILQ
Sbjct:  274 KGTEAQEACVATLLKLLDNVLNKTDE-KFRRVRLANANIQAKILEIEGGLEILIAAGFQLQPDGDETILQ 342
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BLAST of mRNA_S-dermatodea_contig10779.528.1 vs. uniprot
Match: A0A812WM39_SYMMI (PUX2 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WM39_SYMMI)

HSP 1 Score: 60.8 bits (146), Expect = 8.040e-8
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:   19 LVAVQTMLKMMKNMAAKPHEDKFKKIRLANPGFQRKVGGIDGGLEVMIAAGFSLE--TDG----EEPILQHGP 219
            +  V T +KM+ N+   P+E KF+ IRL+N  F+ KV  ++GGLEVM+AAGF L    DG     E  L+HGP
Sbjct:  132 MTCVDTAMKMLANIQRNPNEIKFRCIRLSNVNFRSKVAEVEGGLEVMMAAGFELSQGADGGEEDNETYLRHGP 204
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BLAST of mRNA_S-dermatodea_contig10779.528.1 vs. uniprot
Match: A0A804JJ43_MUSAM (UBA domain-containing protein n=3 Tax=Musa TaxID=4640 RepID=A0A804JJ43_MUSAM)

HSP 1 Score: 60.5 bits (145), Expect = 2.290e-7
Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:   25 AVQTMLKMMKNMAAKPHEDKFKKIRLANPGFQRKVGGIDGGLEVMIAAGFSLETDGEEPILQHGPCDPAPL 237
            A QT+L  + N+A  P+E+KF+KIRL NP FQ +VGG+ GG+E +   GF    DGE   L     D A L
Sbjct:  323 AFQTLLTYVGNVAKNPNEEKFRKIRLNNPTFQDRVGGLHGGVEFLELCGFEKLEDGEFLFLPRDKVDMAVL 393
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BLAST of mRNA_S-dermatodea_contig10779.528.1 vs. uniprot
Match: A0A7S1GP36_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GP36_CYCTE)

HSP 1 Score: 58.2 bits (139), Expect = 4.640e-7
Identity = 27/58 (46.55%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:   25 AVQTMLKMMKNMAAKPHEDKFKKIRLANPGFQRKVGGIDGGLEVMIAAGFSLETDGEE 198
            AV T+ K++ N+A+ P E+K+++++LAN  FQR++GG+ GG E M A GF LE    E
Sbjct:  139 AVNTLAKIVGNIASHPMEEKYRRVKLANAAFQRRLGGLSGGDEAMRAVGFVLEESKSE 196
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BLAST of mRNA_S-dermatodea_contig10779.528.1 vs. uniprot
Match: A0A5J9V245_9POAL (UBA domain-containing protein n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9V245_9POAL)

HSP 1 Score: 58.2 bits (139), Expect = 1.420e-6
Identity = 32/71 (45.07%), Postives = 41/71 (57.75%), Query Frame = 1 
Query:   25 AVQTMLKMMKNMAAKPHEDKFKKIRLANPGFQRKVGGIDGGLEVMIAAGFSLETDGEEPILQHGPCDPAPL 237
            A QT+L  + N+A KP E+KF+KIRL NP FQ +VG + GG+E +   GF    D E   L     D A L
Sbjct:  324 AFQTLLAYVGNVAKKPDEEKFRKIRLNNPTFQERVGNLTGGIEFLQLCGFEKLEDNEFLFLARDKVDMAVL 394
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BLAST of mRNA_S-dermatodea_contig10779.528.1 vs. uniprot
Match: A0A812WYN8_9DINO (DESI1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812WYN8_9DINO)

HSP 1 Score: 58.2 bits (139), Expect = 1.750e-6
Identity = 29/64 (45.31%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:   13 VSLVAVQTMLKMMKNMAAKPHEDKFKKIRLANPGFQRKVGGIDGGLEVMIAAGFSLET--DGEE 198
            V   A+Q +LKM +N+   P E KF++I+++NP FQ+KV    GG+EVM+AAG+  +T  +GE+
Sbjct:  747 VRRTALQMLLKMTENVEKSPSEQKFRRIKMSNPAFQKKVEAAGGGVEVMLAAGWIPDTMPEGED 810
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BLAST of mRNA_S-dermatodea_contig10779.528.1 vs. uniprot
Match: A0A7S2CJQ0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CJQ0_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.840e-6
Identity = 25/66 (37.88%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:   22 VAVQTMLKMMKNMAAKPHEDKFKKIRLANPGFQRKVGGIDGGLEVMIAAGFSLETDGEEPILQHGP 219
            V ++T++K++ N+A  P E+K++KI+ +N  F RK+GG+ GG E ++A GF+ + +G   +   GP
Sbjct:   57 VGLETLVKIVDNIAKNPGEEKYRKIKQSNATFNRKIGGLPGGRECILALGFTDDGEGSWTLEATGP 122
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10779.528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNU4_ECTSI3.090e-3773.20PDZ domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2US51_9STRA2.640e-1047.76Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2DP17_9STRA1.040e-837.50Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3JPU7_9STRA2.540e-847.14Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A812WM39_SYMMI8.040e-846.58PUX2 protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A804JJ43_MUSAM2.290e-746.48UBA domain-containing protein n=3 Tax=Musa TaxID=4... [more]
A0A7S1GP36_CYCTE4.640e-746.55Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A5J9V245_9POAL1.420e-645.07UBA domain-containing protein n=1 Tax=Eragrostis c... [more]
A0A812WYN8_9DINO1.750e-645.31DESI1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A7S2CJQ0_9STRA1.840e-637.88Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10779contigS-dermatodea_contig10779:3696..5394 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionPDZ domain
Ec32 orthologEc-12_003340.1
Hectar predicted targeting categoryother localisation
Exons3
Model size593
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10779.528.1prot_S-dermatodea_contig10779.528.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10779 3995..5358 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924172.921443-UTR-S-dermatodea_contig10779:3695..39941622924172.921443-UTR-S-dermatodea_contig10779:3695..3994Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10779 3696..3994 -
1694079067.6132429-UTR-S-dermatodea_contig10779:3695..39941694079067.6132429-UTR-S-dermatodea_contig10779:3695..3994Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10779 3696..3994 -
1622924172.9738503-UTR-S-dermatodea_contig10779:5358..53941622924172.9738503-UTR-S-dermatodea_contig10779:5358..5394Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10779 5359..5394 -
1694079067.6530547-UTR-S-dermatodea_contig10779:5358..53941694079067.6530547-UTR-S-dermatodea_contig10779:5358..5394Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10779 5359..5394 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924172.9380062-CDS-S-dermatodea_contig10779:3994..40431622924172.9380062-CDS-S-dermatodea_contig10779:3994..4043Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10779 3995..4043 -
1694079067.6230326-CDS-S-dermatodea_contig10779:3994..40431694079067.6230326-CDS-S-dermatodea_contig10779:3994..4043Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10779 3995..4043 -
1622924172.9535542-CDS-S-dermatodea_contig10779:4993..50851622924172.9535542-CDS-S-dermatodea_contig10779:4993..5085Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10779 4994..5085 -
1694079067.633092-CDS-S-dermatodea_contig10779:4993..50851694079067.633092-CDS-S-dermatodea_contig10779:4993..5085Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10779 4994..5085 -
1622924172.9657545-CDS-S-dermatodea_contig10779:5241..53581622924172.9657545-CDS-S-dermatodea_contig10779:5241..5358Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10779 5242..5358 -
1694079067.6418414-CDS-S-dermatodea_contig10779:5241..53581694079067.6418414-CDS-S-dermatodea_contig10779:5241..5358Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10779 5242..5358 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10779.528.1

>prot_S-dermatodea_contig10779.528.1 ID=prot_S-dermatodea_contig10779.528.1|Name=mRNA_S-dermatodea_contig10779.528.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=86bp
MLKMMKNMAAKPHEDKFKKIRLANPGFQRKVGGIDGGLEVMIAAGFSLET
DGEEPILQHGPCDPAPLRLRVAIQKLDQVEARLNN*
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mRNA from alignment at S-dermatodea_contig10779:3696..5394-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10779.528.1 ID=mRNA_S-dermatodea_contig10779.528.1|Name=mRNA_S-dermatodea_contig10779.528.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1699bp|location=Sequence derived from alignment at S-dermatodea_contig10779:3696..5394- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGGGCCGGCCGTTTCCCTGGTGGCGGTTCAGACGATGCTCAAGATGAT
GAAGAACATGGCCGCCAAGCCTCACGAGGACAAATTCAAGAAGATCAGGC
TCGCCAACCCTGGCTTCCAGAGGAAGGTCGGTGGTATCGACGGAGGGCTG
GAGGTGAGCTGCTATTTACGCTGCAGTTGTCGGCATGGAAGGACCGAGGA
GGGCGTGCTTATGTTAAAACGCATGTCGCATCCAAACGGAGATGTAATAG
TAAACCGCTGCGGCTGACGTTCTCGACTTTGTTTTGGCGGGTCATTTTGG
CGCGCGCAGGTGATGATCGCGGCGGGATTTTCGCTCGAAACGGACGGAGA
GGAGCCGATTCTTCAGCACGGGCCGTGCGACCCGGCGCCCTTGAGACTGA
GGTACCCGTGTATACAAGAGTATTAGAGTATTAGAGGATTAATAGCTGCA
TCTGCAGCTGTCCTGGGTGGCCAAAGCAGCCTGCACAACGCGTACGTGTA
GAGATTGGAGATAGCTCTAAGGAATGCTGGTTTTGTTTTTTTGTCGGTCG
GTCGTCCTCGCCTCACAGAAATATGGCAGTTTTAAAATAGACAGTAATCC
TGAACACGCCTCTGCGCAATACGATGGTGCAATCAAAATAGAGGTGCTGG
ATCACCGCTTGATGTTTGTTGTTTGTGCCTTGATGTCACGACACGAGAGA
GAGCGGGGTTGGATCGGTAGGATAAACCATTTTTGCGATTGCTAATAATG
GCGGGGCCGGTCGGCTGGCTGTACGTTTGATCTGTGATAAAACTCAATCA
ACCGAGAAAAAAAAAGAAGGTGGGCAATACCTCCCTCCGCTCAGCTTTAC
TACGGATACAGCGTTGTAGACGTAGACATGCATCTAGGGCTACCTTGTTT
CCTCTTCTGTGCCTTTAGGAAGTACCAGGGACGGTCACGTGTATTATGGA
AGTACTGTAGAGTTCTGATTAGTTATTTTCCCCCTTGACTCTTTGCTCTA
CTGTTAATACTAGTATCTGACTGACCACAAGTCGGGTCGGATTCAGTCCG
ATCGGTTACAATATTCGTGTGCAAATCAATCAATCGATCGACCAATCAAT
CAATCAATCAATCAATCAATCAATCAATCAACCCATGAATCAATCGACCA
ATCACTGCCCTTCGTTTTTCCCTTGTTGCAAGACCTTCCACGTTTCTTTT
TTCCTCCAAGCCAAATCTGCCCTTATCTGTTTACAACACAAATGTGTAAT
TAATCATGTACCTTGCCTAACTTTCCGTGCGGCGGGGCGGGACTCTACTT
TCCTTCTTTTGTCTCTCTTTTTTTTTTTTTACATTTTGCCCCGCTCTGCA
GGGTGGCTATCCAAAAGCTTGACCAAGTGGAAGCAAGGCTGAACAACTAA
ATCCTATTTCTAGGTGGAGAGGTTCATTCTGATCGTCTCTCCCTTTTCCC
TCTCTCTTTTGGCGGCCCGCCGAGCCTTGCGGTTTGAGTTTTCGACCCAA
CCACGGTACTACTGTATGATATCATACTGGCGATACTGTTACTGTTCGCC
GGCGCTCTTTGTCGTGTTTGTATTGCTACTGCAGCTTTCTGTAGATTTTG
GCGACACGAAAATTGTGTTTTGTCTTTCTAAATTTTCGTAAGTAGTATCA
GAATAATCTTTTAAAGAAACGAGGAGGCGAGAGAGATCGATCGTGCGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10779:3696..5394-

>mRNA_S-dermatodea_contig10779.528.1 ID=mRNA_S-dermatodea_contig10779.528.1|Name=mRNA_S-dermatodea_contig10779.528.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at S-dermatodea_contig10779:3696..5394- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTCAAGATGATGAAGAACATGGCCGCCAAGCCTCACGAGGACAAATT
CAAGAAGATCAGGCTCGCCAACCCTGGCTTCCAGAGGAAGGTCGGTGGTA
TCGACGGAGGGCTGGAGATGCTCAAGATGATGAAGAACATGGCCGCCAAG
CCTCACGAGGACAAATTCAAGAAGATCAGGCTCGCCAACCCTGGCTTCCA
GAGGAAGGTCGGTGGTATCGACGGAGGGCTGGAGGTGATGATCGCGGCGG
GATTTTCGCTCGAAACGGACGGAGAGGAGCCGATTCTTCAGCACGGGCCG
TGCGACCCGGCGCCCTTGAGACTGAGGTGATGATCGCGGCGGGATTTTCG
CTCGAAACGGACGGAGAGGAGCCGATTCTTCAGCACGGGCCGTGCGACCC
GGCGCCCTTGAGACTGAGGGTGGCTATCCAAAAGCTTGACCAAGTGGAAG
CAAGGCTGAACAACTAAGGTGGCTATCCAAAAGCTTGACCAAGTGGAAGC
AAGGCTGAACAACTAA
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