mRNA_S-dermatodea_contig10777.526.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10777.526.1
Unique NamemRNA_S-dermatodea_contig10777.526.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig10777.526.1 vs. uniprot
Match: A0A6H5L3E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E1_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 4.910e-12
Identity = 37/53 (69.81%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 LSRLVVTNGNQTAFWEAMSIALFEQGLRPDLKRAQDAGPPCATFQESVDRADR 159
            LSRL+  NG QT FWEA+ I LFE+ LR DL+R Q A PPC TFQESVDRADR
Sbjct:  221 LSRLIEANGGQTTFWEAIMIRLFERALRADLQRLQHAEPPCPTFQESVDRADR 273
[Close]
BLAST of mRNA_S-dermatodea_contig10777.526.1 vs. uniprot
Match: D8LRD7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRD7_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 5.010e-12
Identity = 37/53 (69.81%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 LSRLVVTNGNQTAFWEAMSIALFEQGLRPDLKRAQDAGPPCATFQESVDRADR 159
            LSRL+  NG QT FWEA+ I LFE+ LR DL+R Q A PPC TFQESVDRADR
Sbjct:  222 LSRLIEANGGQTTFWEAIMIRLFERALRADLQRLQHAEPPCPTFQESVDRADR 274
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10777.526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L3E1_9PHAE4.910e-1269.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRD7_ECTSI5.010e-1269.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10777contigS-dermatodea_contig10777:3827..6009 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1423
Cds size1278
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10777.526.1prot_S-dermatodea_contig10777.526.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10777 4681..5958 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924172.8187943-UTR-S-dermatodea_contig10777:3826..39151622924172.8187943-UTR-S-dermatodea_contig10777:3826..3915Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10777 3827..3915 -
1694079067.5409129-UTR-S-dermatodea_contig10777:3826..39151694079067.5409129-UTR-S-dermatodea_contig10777:3826..3915Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10777 3827..3915 -
1622924172.8324265-UTR-S-dermatodea_contig10777:4675..46801622924172.8324265-UTR-S-dermatodea_contig10777:4675..4680Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10777 4676..4680 -
1694079067.5523381-UTR-S-dermatodea_contig10777:4675..46801694079067.5523381-UTR-S-dermatodea_contig10777:4675..4680Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10777 4676..4680 -
1622924172.8542535-UTR-S-dermatodea_contig10777:5958..60091622924172.8542535-UTR-S-dermatodea_contig10777:5958..6009Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10777 5959..6009 -
1694079067.5755262-UTR-S-dermatodea_contig10777:5958..60091694079067.5755262-UTR-S-dermatodea_contig10777:5958..6009Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10777 5959..6009 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924172.8419225-CDS-S-dermatodea_contig10777:4680..59581622924172.8419225-CDS-S-dermatodea_contig10777:4680..5958Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10777 4681..5958 -
1694079067.5620017-CDS-S-dermatodea_contig10777:4680..59581694079067.5620017-CDS-S-dermatodea_contig10777:4680..5958Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10777 4681..5958 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10777.526.1

>prot_S-dermatodea_contig10777.526.1 ID=prot_S-dermatodea_contig10777.526.1|Name=mRNA_S-dermatodea_contig10777.526.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=426bp
MSIALFEQGLRPDLKRAQDAGPPCATFQESVDRADRIAAAAAAAVSRVLN
GKDGVGAAGAAGASYSAGAPINNSSAGGADIGLREKDRYANHPGTAPAGL
QPQPTVTPAARYHHPLAAAVASPPVAVSDMDISGLGEPSSSSSANGNAFE
PAAPRTGDGLVFVKCEVGADDYEPAVAKANNIGGITTAAAATKTPVKLSR
SSSSSGRDGPSISSNKRSIMHAYYEDEAQAGLVPPTSQLGGGVGNPLDGG
GSAASNHFGGGGFGEEARVLASREPSQYSGSRRGKEKGRDSQLRGDQSRS
PSSRRKPHKKKASLNAKRRREWADPNTGGGGGSRDQHPHLEETAADRPPC
SLPQCQSINRQFHCANDCFYHMVNGEQNRLRYEARHNKPKRPFRMQPEPM
GYNGYYGDDHQNQGPRYDHGFAGLH*
back to top

mRNA from alignment at S-dermatodea_contig10777:3827..6009-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10777.526.1 ID=mRNA_S-dermatodea_contig10777.526.1|Name=mRNA_S-dermatodea_contig10777.526.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2183bp|location=Sequence derived from alignment at S-dermatodea_contig10777:3827..6009- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTGAGTCGGCTCGTCGTGACGAATGGGAATCAAACAGCGTTCTGGGAGGC
GATGTCGATAGCGCTCTTTGAACAAGGGCTCCGACCCGATCTTAAAAGGG
CGCAGGATGCCGGACCTCCGTGCGCTACATTTCAAGAAAGCGTAGACCGG
GCAGATCGCATCGCAGCAGCAGCAGCAGCTGCTGTAAGCCGCGTGCTGAA
TGGGAAGGACGGTGTTGGTGCTGCTGGGGCTGCTGGGGCTTCCTATTCGG
CTGGTGCCCCTATTAATAATAGTAGTGCTGGCGGTGCCGATATCGGGCTT
CGAGAGAAAGATCGTTATGCCAACCACCCCGGAACGGCGCCCGCGGGATT
GCAACCGCAACCTACTGTAACGCCTGCAGCACGTTATCATCATCCTCTTG
CAGCTGCTGTTGCGAGTCCTCCGGTTGCTGTGTCTGACATGGATATTTCC
GGGCTTGGCGAGCCTTCTTCTTCTTCCTCCGCAAATGGAAATGCGTTTGA
GCCGGCTGCGCCTCGTACGGGCGACGGCTTGGTCTTCGTCAAGTGTGAGG
TAGGCGCAGATGATTACGAGCCGGCTGTGGCGAAGGCTAATAATATTGGC
GGGATAACTACTGCAGCAGCAGCCACCAAAACCCCGGTGAAATTATCCAG
AAGCAGCAGCAGCAGTGGCCGGGACGGTCCTTCAATTTCCTCCAACAAAA
GAAGCATAATGCACGCATACTACGAAGACGAGGCGCAGGCGGGGCTGGTG
CCTCCGACCTCTCAACTGGGCGGCGGCGTCGGCAACCCCCTTGATGGTGG
CGGGTCTGCTGCTAGTAATCATTTCGGCGGTGGAGGGTTCGGTGAAGAGG
CGAGAGTGTTGGCGTCGAGAGAACCGTCGCAATATTCGGGCTCGCGCCGA
GGAAAAGAGAAAGGAAGAGACAGCCAGCTGAGGGGAGACCAAAGTCGCTC
CCCCAGCAGCCGCAGAAAGCCCCACAAAAAGAAGGCTTCACTGAACGCGA
AGCGTCGACGGGAGTGGGCGGACCCGAACACAGGCGGGGGGGGGGGCTCC
CGCGATCAACACCCCCACCTGGAAGAGACGGCCGCTGACCGACCTCCGTG
CTCGCTCCCTCAGTGCCAATCCATCAACCGCCAATTCCACTGTGCCAACG
ACTGTTTTTACCACATGGTAAACGGGGAGCAAAACCGGTTGCGGTACGAA
GCGCGACATAACAAGCCGAAGCGTCCTTTCCGCATGCAGCCTGAGCCAAT
GGGGTATAACGGGTACTACGGTGACGACCACCAGAACCAGGGCCCGCGGT
ACGATCATGGCTTCGCGGGCCTGCATTAGGACGGGTGAGACCAGCGATAC
ATGACGATTTGTTGTGTCATTCATAGTATATGTTGATAAGATGGCCAGTG
TTATTTAACAGGACGATGTCGGCAGGTGCAGACGTTACCGGTAACCATGT
TTGTGTGGTCCAAAGAGGGGCTGAGTGATGGCGAGGGCATGTCCAAGTAC
ACGAATCACGCATACATAATAAATAAGAAGAGCGGTTGACAGTGCAACGC
TTACGGCGTACATTGCAGCGGTACGCCGATTCTTCTGGCTGGCCTGTACA
TATGTCCTGCCGTAGCTCTGGCTGTTCCTACGCTGTGCTGCAAAGCATTT
CCCTCGGCAGAATCAATTCTGACCCACAAGACGAGCTCGACGTGCTCGTA
TTACAAATATCGAAGCCCATGCTCTGTGATTCGAGGTACGTGGCGAAAGA
GGGGATTTCAGACAGCGGAGAGTTTCGTCGACTAGGTTAGGCGATCCTCG
CGCCAGCAAAACACCAAGTGTCGTGAAAAGTCGGCAAGCGAGGGGGCTAG
TTCTATGCTGAGTGAAAGCAATAACAGCAAGGAGGCATGGGCGTACCGTC
GTTATGGTGGTTGCAATCCCGTAGGAAATATGATACGGTGGAACGTTACG
GTTTAATGGCGAAGCACCGTTGACGCGATTTTTCGACGGTTATTTATATG
GCATAAACGCCGTCTATTTTTGTCCTTTCAAACGTGATGACTTGATAAAC
CGTTTAATGTGGACCTGGTACCCGCACATCACTTGTGTCCACAGAGCTGC
CAACGGTCGAAGGCAAACGCAAAACGGTCGGCAGGGGAGGGACCGCCAAG
CGCAGCAGGGAAAAGAGCGTTGCAAAACTCGGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10777:3827..6009-

>mRNA_S-dermatodea_contig10777.526.1 ID=mRNA_S-dermatodea_contig10777.526.1|Name=mRNA_S-dermatodea_contig10777.526.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2556bp|location=Sequence derived from alignment at S-dermatodea_contig10777:3827..6009- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCGATAGCGCTCTTTGAACAAGGGCTCCGACCCGATCTTAAAAGGGC
GCAGGATGCCGGACCTCCGTGCGCTACATTTCAAGAAAGCGTAGACCGGG
CAGATCGCATCGCAGCAGCAGCAGCAGCTGCTGTAAGCCGCGTGCTGAAT
GGGAAGGACGGTGTTGGTGCTGCTGGGGCTGCTGGGGCTTCCTATTCGGC
TGGTGCCCCTATTAATAATAGTAGTGCTGGCGGTGCCGATATCGGGCTTC
GAGAGAAAGATCGTTATGCCAACCACCCCGGAACGGCGCCCGCGGGATTG
CAACCGCAACCTACTGTAACGCCTGCAGCACGTTATCATCATCCTCTTGC
AGCTGCTGTTGCGAGTCCTCCGGTTGCTGTGTCTGACATGGATATTTCCG
GGCTTGGCGAGCCTTCTTCTTCTTCCTCCGCAAATGGAAATGCGTTTGAG
CCGGCTGCGCCTCGTACGGGCGACGGCTTGGTCTTCGTCAAGTGTGAGGT
AGGCGCAGATGATTACGAGCCGGCTGTGGCGAAGGCTAATAATATTGGCG
GGATAACTACTGCAGCAGCAGCCACCAAAACCCCGGTGAAATTATCCAGA
AGCAGCAGCAGCAGTGGCCGGGACGGTCCTTCAATTTCCTCCAACAAAAG
AAGCATAATGCACGCATACTACGAAGACGAGGCGCAGGCGGGGCTGGTGC
CTCCGACCTCTCAACTGGGCGGCGGCGTCGGCAACCCCCTTGATGGTGGC
GGGTCTGCTGCTAGTAATCATTTCGGCGGTGGAGGGTTCGGTGAAGAGGC
GAGAGTGTTGGCGTCGAGAGAACCGTCGCAATATTCGGGCTCGCGCCGAG
GAAAAGAGAAAGGAAGAGACAGCCAGCTGAGGGGAGACCAAAGTCGCTCC
CCCAGCAGCCGCAGAAAGCCCCACAAAAAGAAGGCTTCACTGAACGCGAA
GCGTCGACGGGAGTGGGCGGACCCGAACACAGGCGGGGGGGGGGGCTCCC
GCGATCAACACCCCCACCTGGAAGAGACGGCCGCTGACCGACCTCCGTGC
TCGCTCCCTCAGTGCCAATCCATCAACCGCCAATTCCACTGTGCCAACGA
CTGTTTTTACCACATGGTAAACGGGGAGCAAAACCGGTTGCGGTACGAAG
CGCGACATAACAAGCCGAAGCGTCCTTTCCGCATGCAGCCTGAGCCAATG
GGGTATAACGGGTACTACGGTGACGACCACCAGAACCAGGGCCCGCGGTA
CGATCATGGCTTCGCGGGCCTGCATTAGATGTCGATAGCGCTCTTTGAAC
AAGGGCTCCGACCCGATCTTAAAAGGGCGCAGGATGCCGGACCTCCGTGC
GCTACATTTCAAGAAAGCGTAGACCGGGCAGATCGCATCGCAGCAGCAGC
AGCAGCTGCTGTAAGCCGCGTGCTGAATGGGAAGGACGGTGTTGGTGCTG
CTGGGGCTGCTGGGGCTTCCTATTCGGCTGGTGCCCCTATTAATAATAGT
AGTGCTGGCGGTGCCGATATCGGGCTTCGAGAGAAAGATCGTTATGCCAA
CCACCCCGGAACGGCGCCCGCGGGATTGCAACCGCAACCTACTGTAACGC
CTGCAGCACGTTATCATCATCCTCTTGCAGCTGCTGTTGCGAGTCCTCCG
GTTGCTGTGTCTGACATGGATATTTCCGGGCTTGGCGAGCCTTCTTCTTC
TTCCTCCGCAAATGGAAATGCGTTTGAGCCGGCTGCGCCTCGTACGGGCG
ACGGCTTGGTCTTCGTCAAGTGTGAGGTAGGCGCAGATGATTACGAGCCG
GCTGTGGCGAAGGCTAATAATATTGGCGGGATAACTACTGCAGCAGCAGC
CACCAAAACCCCGGTGAAATTATCCAGAAGCAGCAGCAGCAGTGGCCGGG
ACGGTCCTTCAATTTCCTCCAACAAAAGAAGCATAATGCACGCATACTAC
GAAGACGAGGCGCAGGCGGGGCTGGTGCCTCCGACCTCTCAACTGGGCGG
CGGCGTCGGCAACCCCCTTGATGGTGGCGGGTCTGCTGCTAGTAATCATT
TCGGCGGTGGAGGGTTCGGTGAAGAGGCGAGAGTGTTGGCGTCGAGAGAA
CCGTCGCAATATTCGGGCTCGCGCCGAGGAAAAGAGAAAGGAAGAGACAG
CCAGCTGAGGGGAGACCAAAGTCGCTCCCCCAGCAGCCGCAGAAAGCCCC
ACAAAAAGAAGGCTTCACTGAACGCGAAGCGTCGACGGGAGTGGGCGGAC
CCGAACACAGGCGGGGGGGGGGGCTCCCGCGATCAACACCCCCACCTGGA
AGAGACGGCCGCTGACCGACCTCCGTGCTCGCTCCCTCAGTGCCAATCCA
TCAACCGCCAATTCCACTGTGCCAACGACTGTTTTTACCACATGGTAAAC
GGGGAGCAAAACCGGTTGCGGTACGAAGCGCGACATAACAAGCCGAAGCG
TCCTTTCCGCATGCAGCCTGAGCCAATGGGGTATAACGGGTACTACGGTG
ACGACCACCAGAACCAGGGCCCGCGGTACGATCATGGCTTCGCGGGCCTG
CATTAG
back to top