mRNA_S-dermatodea_contig10770.523.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10770.523.1
Unique NamemRNA_S-dermatodea_contig10770.523.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10770.523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10770contigS-dermatodea_contig10770:1658..2713 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1057
Cds size1056
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924172.6364017-CDS-S-dermatodea_contig10770:1657..27131622924172.6364017-CDS-S-dermatodea_contig10770:1657..2713Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10770 1658..2713 +
1694079067.4078913-CDS-S-dermatodea_contig10770:1657..27131694079067.4078913-CDS-S-dermatodea_contig10770:1657..2713Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10770 1658..2713 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10770.523.1prot_S-dermatodea_contig10770.523.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10770 1658..2713 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10770.523.1

>prot_S-dermatodea_contig10770.523.1 ID=prot_S-dermatodea_contig10770.523.1|Name=mRNA_S-dermatodea_contig10770.523.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=352bp
MRARSKEDHTPLMERTKSDKVSRKSAAGGKTLAGHRDGLARERGTNEEGL
RSAESLDPGEGLRDSDRGVEAEVETRANQAWEASSGRDDIGEVVGELGGA
REPQQQRPTHVTAESSTVDRETSVAGAPYDFSSTSAVRWSAGPRDVSDGL
VPLAEEKAQDESGFQSRSISLAPPPPSSSPEIFSSPVLTTDYFLAERVAR
EISATGMPLGEEAKDPGAPASPSAMASKTQADGNDFAGDGGRGIASSTDE
AESPRETDPEGPRKRPPLPFLPGVLPYRRGRAGAAVGDAVVGQAGDALDD
AGDDVVWDGLDEGDALSLGGAGLSEEAGATAAAAASSIAAAVAAALEAVR
TE
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mRNA from alignment at S-dermatodea_contig10770:1658..2713+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10770.523.1 ID=mRNA_S-dermatodea_contig10770.523.1|Name=mRNA_S-dermatodea_contig10770.523.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1056bp|location=Sequence derived from alignment at S-dermatodea_contig10770:1658..2713+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGGGCGCGATCCAAGGAAGACCACACCCCCTTGATGGAGAGGACCAA
ATCCGACAAGGTGTCGCGGAAGAGTGCCGCCGGAGGAAAGACCCTGGCGG
GACACCGGGACGGTCTCGCGCGAGAAAGGGGCACAAACGAAGAGGGCCTC
CGTTCGGCCGAGAGCCTAGACCCCGGCGAAGGTCTGCGGGATTCTGACCG
AGGCGTGGAGGCTGAAGTAGAAACTCGTGCGAATCAAGCGTGGGAAGCTA
GCTCAGGCAGGGACGACATCGGGGAGGTGGTAGGGGAGCTCGGTGGCGCC
CGTGAGCCCCAGCAGCAGCGACCAACACACGTCACCGCAGAGTCGAGCAC
CGTTGACCGAGAGACATCCGTCGCTGGCGCGCCATACGACTTTTCCAGCA
CCAGTGCCGTACGATGGAGCGCTGGCCCGCGTGATGTCAGCGACGGCCTC
GTGCCGTTGGCGGAAGAAAAAGCGCAGGACGAATCAGGTTTTCAATCGCG
GTCAATATCTCTTGCCCCGCCGCCGCCCTCGTCATCTCCGGAGATTTTTT
CATCGCCTGTGCTCACGACCGATTATTTTCTCGCCGAGCGTGTAGCGAGG
GAGATTAGCGCGACGGGTATGCCCCTGGGCGAAGAGGCTAAAGATCCCGG
CGCGCCCGCCTCGCCATCGGCGATGGCGTCGAAAACACAAGCCGACGGTA
ACGATTTTGCCGGCGATGGAGGGCGTGGCATCGCCTCGTCGACGGATGAG
GCTGAGAGCCCCCGGGAAACAGATCCTGAGGGACCCCGGAAAAGGCCTCC
GTTGCCGTTCTTGCCGGGCGTATTGCCGTACCGGCGTGGAAGGGCTGGGG
CGGCGGTTGGTGACGCAGTTGTCGGTCAAGCGGGGGATGCTTTGGATGAT
GCCGGCGATGACGTTGTTTGGGATGGGTTGGACGAGGGTGATGCGTTATC
TCTTGGCGGCGCTGGACTATCGGAAGAGGCCGGGGCCACCGCAGCCGCAG
CCGCGTCTTCTATTGCCGCCGCTGTTGCGGCCGCTCTTGAGGCCGTGCGG
ACCGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10770:1658..2713+

>mRNA_S-dermatodea_contig10770.523.1 ID=mRNA_S-dermatodea_contig10770.523.1|Name=mRNA_S-dermatodea_contig10770.523.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2112bp|location=Sequence derived from alignment at S-dermatodea_contig10770:1658..2713+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGGGCGCGATCCAAGGAAGACCACACCCCCTTGATGGAGAGGACCAA
ATCCGACAAGGTGTCGCGGAAGAGTGCCGCCGGAGGAAAGACCCTGGCGG
GACACCGGGACGGTCTCGCGCGAGAAAGGGGCACAAACGAAGAGGGCCTC
CGTTCGGCCGAGAGCCTAGACCCCGGCGAAGGTCTGCGGGATTCTGACCG
AGGCGTGGAGGCTGAAGTAGAAACTCGTGCGAATCAAGCGTGGGAAGCTA
GCTCAGGCAGGGACGACATCGGGGAGGTGGTAGGGGAGCTCGGTGGCGCC
CGTGAGCCCCAGCAGCAGCGACCAACACACGTCACCGCAGAGTCGAGCAC
CGTTGACCGAGAGACATCCGTCGCTGGCGCGCCATACGACTTTTCCAGCA
CCAGTGCCGTACGATGGAGCGCTGGCCCGCGTGATGTCAGCGACGGCCTC
GTGCCGTTGGCGGAAGAAAAAGCGCAGGACGAATCAGGTTTTCAATCGCG
GTCAATATCTCTTGCCCCGCCGCCGCCCTCGTCATCTCCGGAGATTTTTT
CATCGCCTGTGCTCACGACCGATTATTTTCTCGCCGAGCGTGTAGCGAGG
GAGATTAGCGCGACGGGTATGCCCCTGGGCGAAGAGGCTAAAGATCCCGG
CGCGCCCGCCTCGCCATCGGCGATGGCGTCGAAAACACAAGCCGACGGTA
ACGATTTTGCCGGCGATGGAGGGCGTGGCATCGCCTCGTCGACGGATGAG
GCTGAGAGCCCCCGGGAAACAGATCCTGAGGGACCCCGGAAAAGGCCTCC
GTTGCCGTTCTTGCCGGGCGTATTGCCGTACCGGCGTGGAAGGGCTGGGG
CGGCGGTTGGTGACGCAGTTGTCGGTCAAGCGGGGGATGCTTTGGATGAT
GCCGGCGATGACGTTGTTTGGGATGGGTTGGACGAGGGTGATGCGTTATC
TCTTGGCGGCGCTGGACTATCGGAAGAGGCCGGGGCCACCGCAGCCGCAG
CCGCGTCTTCTATTGCCGCCGCTGTTGCGGCCGCTCTTGAGGCCGTGCGG
ACCGAGATGAGGGCGCGATCCAAGGAAGACCACACCCCCTTGATGGAGAG
GACCAAATCCGACAAGGTGTCGCGGAAGAGTGCCGCCGGAGGAAAGACCC
TGGCGGGACACCGGGACGGTCTCGCGCGAGAAAGGGGCACAAACGAAGAG
GGCCTCCGTTCGGCCGAGAGCCTAGACCCCGGCGAAGGTCTGCGGGATTC
TGACCGAGGCGTGGAGGCTGAAGTAGAAACTCGTGCGAATCAAGCGTGGG
AAGCTAGCTCAGGCAGGGACGACATCGGGGAGGTGGTAGGGGAGCTCGGT
GGCGCCCGTGAGCCCCAGCAGCAGCGACCAACACACGTCACCGCAGAGTC
GAGCACCGTTGACCGAGAGACATCCGTCGCTGGCGCGCCATACGACTTTT
CCAGCACCAGTGCCGTACGATGGAGCGCTGGCCCGCGTGATGTCAGCGAC
GGCCTCGTGCCGTTGGCGGAAGAAAAAGCGCAGGACGAATCAGGTTTTCA
ATCGCGGTCAATATCTCTTGCCCCGCCGCCGCCCTCGTCATCTCCGGAGA
TTTTTTCATCGCCTGTGCTCACGACCGATTATTTTCTCGCCGAGCGTGTA
GCGAGGGAGATTAGCGCGACGGGTATGCCCCTGGGCGAAGAGGCTAAAGA
TCCCGGCGCGCCCGCCTCGCCATCGGCGATGGCGTCGAAAACACAAGCCG
ACGGTAACGATTTTGCCGGCGATGGAGGGCGTGGCATCGCCTCGTCGACG
GATGAGGCTGAGAGCCCCCGGGAAACAGATCCTGAGGGACCCCGGAAAAG
GCCTCCGTTGCCGTTCTTGCCGGGCGTATTGCCGTACCGGCGTGGAAGGG
CTGGGGCGGCGGTTGGTGACGCAGTTGTCGGTCAAGCGGGGGATGCTTTG
GATGATGCCGGCGATGACGTTGTTTGGGATGGGTTGGACGAGGGTGATGC
GTTATCTCTTGGCGGCGCTGGACTATCGGAAGAGGCCGGGGCCACCGCAG
CCGCAGCCGCGTCTTCTATTGCCGCCGCTGTTGCGGCCGCTCTTGAGGCC
GTGCGGACCGAG
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