mRNA_S-dermatodea_contig1077.521.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1077.521.1
Unique NamemRNA_S-dermatodea_contig1077.521.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1077.521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1077contigS-dermatodea_contig1077:3237..3975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size258
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1077.521.1prot_S-dermatodea_contig1077.521.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1077 3237..3970 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924172.4842682-CDS-S-dermatodea_contig1077:3236..34641622924172.4842682-CDS-S-dermatodea_contig1077:3236..3464Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1077 3237..3464 -
1694079067.2831948-CDS-S-dermatodea_contig1077:3236..34641694079067.2831948-CDS-S-dermatodea_contig1077:3236..3464Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1077 3237..3464 -
1622924172.5067487-CDS-S-dermatodea_contig1077:3940..39701622924172.5067487-CDS-S-dermatodea_contig1077:3940..3970Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1077 3941..3970 -
1694079067.2940488-CDS-S-dermatodea_contig1077:3940..39701694079067.2940488-CDS-S-dermatodea_contig1077:3940..3970Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1077 3941..3970 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924172.5187974-UTR-S-dermatodea_contig1077:3970..39751622924172.5187974-UTR-S-dermatodea_contig1077:3970..3975Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1077 3971..3975 -
1694079067.30377-UTR-S-dermatodea_contig1077:3970..39751694079067.30377-UTR-S-dermatodea_contig1077:3970..3975Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1077 3971..3975 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1077.521.1

>prot_S-dermatodea_contig1077.521.1 ID=prot_S-dermatodea_contig1077.521.1|Name=mRNA_S-dermatodea_contig1077.521.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=86bp
MVARKPDGAEVVLAGHIPLGRRNEGLLCGAERVMRNIAGMDPPAYGARNV
RGQLVLGREYHCSVFLTPAPKGAGELLDAWMERGIR
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mRNA from alignment at S-dermatodea_contig1077:3237..3975-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1077.521.1 ID=mRNA_S-dermatodea_contig1077.521.1|Name=mRNA_S-dermatodea_contig1077.521.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=739bp|location=Sequence derived from alignment at S-dermatodea_contig1077:3237..3975- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAAGATGGTGGCTAGGAAACCCGACGGGGCCGAGGTGAGACGGGAAACA
AAGCCACTACAGTAGGGCATGGTGTTTCCGCCCCCTCAGCGTGACTAGAT
ATGATTTCACCACCTTCACTTGGCGTTTGGCCGCCAAAGGTAAACCCGAG
AGCAACACGGCCACTCTGTGAGTCGTTGAAGGCATGGCCATTTAAGGTGG
GTTTGTTCTATGAACCACGGCACTCAGTAAGCAATCGGCACCAGCCTATA
AAGCCCCGAGAGAGACTTTTGTTCCGATTCCTCGTTCCCCTCCTGGCCTT
TTCCGCTGCGCACCACGGCCACAGTGGGTTTCGTGGCAATTTCGTGAAGC
GAGATAAAGCGCATGAGCGTACCTTTGTTTGTGCGACCGTACGAGCACTT
GTGCGGTGGCCGGCAGCAAAGCTGTCGCCTACGGAAGTTCTTCTCGCGTG
TATGGCTCCCATTTCCGGACCCGCTTCACAACCGTATGGTTTGTCCTTCA
AAATAAACCAGGTGGTGCTGGCGGGGCACATCCCCTTGGGCAGAAGGAAC
GAAGGGCTCCTCTGCGGCGCGGAGCGTGTCATGCGGAATATCGCAGGAAT
GGACCCCCCTGCCTACGGCGCTCGCAACGTCCGAGGTCAATTGGTGCTCG
GAAGGGAGTACCACTGCTCCGTATTCCTGACCCCCGCGCCGAAGGGTGCG
GGCGAGCTCTTAGACGCGTGGATGGAACGCGGGATCCGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig1077:3237..3975-

>mRNA_S-dermatodea_contig1077.521.1 ID=mRNA_S-dermatodea_contig1077.521.1|Name=mRNA_S-dermatodea_contig1077.521.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at S-dermatodea_contig1077:3237..3975- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGGCTAGGAAACCCGACGGGGCCGAGATGGTGGCTAGGAAACCCGA
CGGGGCCGAGGTGGTGCTGGCGGGGCACATCCCCTTGGGCAGAAGGAACG
AAGGGCTCCTCTGCGGCGCGGAGCGTGTCATGCGGAATATCGCAGGAATG
GACCCCCCTGCCTACGGCGCTCGCAACGTCCGAGGTCAATTGGTGCTCGG
AAGGGAGTACCACTGCTCCGTATTCCTGACCCCCGCGCCGAAGGGTGCGG
GCGAGCTCTTAGACGCGTGGATGGAACGCGGGATCCGCGTGGTGCTGGCG
GGGCACATCCCCTTGGGCAGAAGGAACGAAGGGCTCCTCTGCGGCGCGGA
GCGTGTCATGCGGAATATCGCAGGAATGGACCCCCCTGCCTACGGCGCTC
GCAACGTCCGAGGTCAATTGGTGCTCGGAAGGGAGTACCACTGCTCCGTA
TTCCTGACCCCCGCGCCGAAGGGTGCGGGCGAGCTCTTAGACGCGTGGAT
GGAACGCGGGATCCGC
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