mRNA_S-dermatodea_contig10753.514.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10753.514.1
Unique NamemRNA_S-dermatodea_contig10753.514.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10753.514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10753contigS-dermatodea_contig10753:2651..5056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPutative kinesin
Ec32 orthologEc-13_003550.1
Exons2
Model size379
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924172.0864215-CDS-S-dermatodea_contig10753:2650..28151622924172.0864215-CDS-S-dermatodea_contig10753:2650..2815Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10753 2651..2815 +
1694079067.0390818-CDS-S-dermatodea_contig10753:2650..28151694079067.0390818-CDS-S-dermatodea_contig10753:2650..2815Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10753 2651..2815 +
1622924172.098148-CDS-S-dermatodea_contig10753:4844..50541622924172.098148-CDS-S-dermatodea_contig10753:4844..5054Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10753 4845..5054 +
1694079067.049505-CDS-S-dermatodea_contig10753:4844..50541694079067.049505-CDS-S-dermatodea_contig10753:4844..5054Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10753 4845..5054 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10753.514.1prot_S-dermatodea_contig10753.514.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10753 2651..5054 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10753.514.1

>prot_S-dermatodea_contig10753.514.1 ID=prot_S-dermatodea_contig10753.514.1|Name=mRNA_S-dermatodea_contig10753.514.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=125bp
AAAADSRVLRAMMEEHEAAADRIEELEHVVVELEQDEDRLVDEVCALRQR
IQEMEALQETTAEELAAESAKLTATETDLGDAKRQHETLAQEYGDLETVN
SGVRNDLASAQREAASAGDIIADLE
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mRNA from alignment at S-dermatodea_contig10753:2651..5056+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10753.514.1 ID=mRNA_S-dermatodea_contig10753.514.1|Name=mRNA_S-dermatodea_contig10753.514.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2406bp|location=Sequence derived from alignment at S-dermatodea_contig10753:2651..5056+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGCCGCGGCAGACTCGAGGGTGCTCCGCGCGATGATGGAGGAGCACGA
GGCTGCGGCGGATAGGATCGAGGAGCTGGAGCACGTGGTGGTCGAGCTGG
AGCAGGACGAGGACAGGCTGGTAGACGAAGTTTGCGCCTTGCGACAGCGG
ATCCAAGAGATGGAGGTGTGGGCGGGGGTGGGGGTGGGGTGGGCGGGGGG
TGGGTGGGAAGGGGAGGGGACATCCATTAATGTTATTTAGGTTAAGGCGG
GCGGAGGGGGGCGCGGGGGCGGCGGAGGGGGGGGGGGGGGTGACGAGATA
AGCTGGTTCCGGGTTAGTCGTTGGGGTCATGAATAGGTCTCTGTGTTGAG
TGGAGGGGTCCATTCCATGATAAAGGGATTATTCTATAAATTGTTCTGAG
GACGGAACTCTGTCCCAACAAGTTGTTGCCGCTCACCCCTGAAACCAGAA
TTTTGTATATAACATAAAGTCAGCGCTGGGGAAGAAAAATTAGGTACAAG
CTACTCATACCTTTTAGGAGGTCTACGTTATGTGCAAGTATAATGCTGTG
GGGGAGTTGTAGAGATGTCGCTGTCTGGTTTAAATCGCCCCCCCAGCCTG
GTCCGGCGAAAACCCGGCGTGCTCCGTCCCGGCTTTGTAGGGATGCGAGG
TCGATGGNNNNNNNNNNAAGCACCGGCCGGGCTTTGAGGGGACGGGAGGT
CTGGGGTTCAACCGCTTCCTCTTCCAATCTCAATGAGTACCCCCCCCCCC
CCCCCCCTCGCCCCAGAGTTGTGTGGATGAGCAGAAGGCGTCATCGGGCT
TGGTTGTTGTGTTGTTTTGATACGGTGTTGTCATCTTACGTGTGGCACTC
CGTTCAACCTAACACGCCCTTCATGTTGACAGTCCACAACAGGGCCTGTT
TTGCATTCAAAAGGACCTGTTTAGCATTGATGGGTGGATTGGTTGATTGA
TTATCACACATGCCGTCGATCTGCCTCTCCACCCCGATCCCGATCGCTCG
AGGTCGCTAAAGGGGGTGCTACTGTGTACACACGGAAGGTACACACGTAA
AATCTTGTAAAAAATGGGCATCCACACACACGGCGAGATAAACCAAGCAA
GAACCAGCCTCACTCAAACGAATATTCCCAACCATAACTACAACGACACC
TCATTATTGTGTACAGCTTGTAACTTAAGCCCTGGTCAATCCGATCTCTG
CAGCAGCATGTACTGTCTGGAGTCGGAAGTGCTCCTTAGATCCTCACCGC
AAGCAGTGTTTTACTGCTTTGGTCCGCGTAACATATTCCTAACTGCTGCG
TTCATGAAGAATGTCCAACACCAACACCAACACCGCGTCGCCTTTTGACG
TGCTTGGCAAGAAGTCCCACGACTGGAAGGGGGCAAAAGCAAGTCACAAG
ACACAAACATTGAACAATAGGCTTCTCTCCAAGAGTACGTACAATATATA
GATACTGCGCCTACCCGCCATCTAACACCCTCGGCAGTCAACTGCGAAGC
GGACCATAGCTAGGGATGGACCTCTTACTCTTTACAAAACCCAAAATGAC
ACAAAACAAAACAGTTTGCTGCACGCAAAAATATCGAAGAAGAAAAAATT
AATGCTTCAGTGTCCGCGGGCGCGACGATGGCCGTTTGGGGCGCGCGCTG
ATGATGCTCGTACATCAGCCGTGTTCCGTCACCCCTTCAACGTCCGCTCC
CCGTGCGTCCTTGTGCTCGTTGTTCTGCACCCGCTCTCGATTTGTTTTGC
TCGCACAAATCTAATGCTTCTCGGCACACGGCCTCGATGGTTATCGCGTT
ACGCTTCTCACGACAATTGTAGGGTTTGCGATCGCCGTCTCGCCTCTCGT
CGATGGTAGATCTTCCCCCCGCCTCGTCGAATCTGGCGCTTTAGTCACGT
TAACGGTAGTACCCGTGCCCACGGGGTTACGCTTATATACTATATGGCAC
GTTACAGGTACAGAGTATGTCCATGTGTTGCCTTCTTCTACGGGGTACGT
CAAACATGAGGCAAAGGAACAACAAGAATACACACTCGCACAACGTTATC
ATGTACTTCGAAGTATGATAGCAGTATCATCTCATCTCATAGCACACCGT
ATCATACCATATCAAACCATGCATGCGACAAGCCGACCACGAAACCTTAA
AGAACCAGTTTGTTGTTACCTTTCCGAAAAATTACACGAAACAGGCCTTA
CAGGAGACCACGGCCGAGGAGCTGGCGGCCGAGTCCGCCAAGCTGACAGC
CACCGAGACCGACCTCGGCGACGCCAAGCGGCAGCACGAAACCCTAGCCC
AGGAATACGGGGATCTCGAGACGGTCAACTCGGGCGTCCGGAACGACCTA
GCCTCAGCGCAGCGGGAGGCGGCGTCGGCCGGCGATATCATCGCCGACCT
CGAGAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10753:2651..5056+

>mRNA_S-dermatodea_contig10753.514.1 ID=mRNA_S-dermatodea_contig10753.514.1|Name=mRNA_S-dermatodea_contig10753.514.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at S-dermatodea_contig10753:2651..5056+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGCCGCGGCAGACTCGAGGGTGCTCCGCGCGATGATGGAGGAGCACGA
GGCTGCGGCGGATAGGATCGAGGAGCTGGAGCACGTGGTGGTCGAGCTGG
AGCAGGACGAGGACAGGCTGGTAGACGAAGTTTGCGCCTTGCGACAGCGG
ATCCAAGAGATGGAGGCCGCCGCGGCAGACTCGAGGGTGCTCCGCGCGAT
GATGGAGGAGCACGAGGCTGCGGCGGATAGGATCGAGGAGCTGGAGCACG
TGGTGGTCGAGCTGGAGCAGGACGAGGACAGGCTGGTAGACGAAGTTTGC
GCCTTGCGACAGCGGATCCAAGAGATGGAGGCCTTACAGGAGACCACGGC
CGAGGAGCTGGCGGCCGAGTCCGCCAAGCTGACAGCCACCGAGACCGACC
TCGGCGACGCCAAGCGGCAGCACGAAACCCTAGCCCAGGAATACGGGGAT
CTCGAGACGGTCAACTCGGGCGTCCGGAACGACCTAGCCTCAGCGCAGCG
GGAGGCGGCGTCGGCCGGCGATATCATCGCCGACCTCGAGGCCTTACAGG
AGACCACGGCCGAGGAGCTGGCGGCCGAGTCCGCCAAGCTGACAGCCACC
GAGACCGACCTCGGCGACGCCAAGCGGCAGCACGAAACCCTAGCCCAGGA
ATACGGGGATCTCGAGACGGTCAACTCGGGCGTCCGGAACGACCTAGCCT
CAGCGCAGCGGGAGGCGGCGTCGGCCGGCGATATCATCGCCGACCTCGAG
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