mRNA_S-dermatodea_contig10742.509.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10742.509.1
Unique NamemRNA_S-dermatodea_contig10742.509.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10742.509.1 vs. uniprot
Match: D7G3B6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3B6_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 3.180e-30
Identity = 57/87 (65.52%), Postives = 72/87 (82.76%), Query Frame = 1 
Query:    1 GPSFMAYESRNRTPGVSFGDKFVVVLQFVLIKEGPNKCRLQTSAQANVSDKVMSFVQGQIVSAVAKVTKENHHQLLGLIEDALSGKG 261
            GPSF+A+E+R +TPGV++GDKF VV Q+VL KEGP  CRLQ+S+Q + SD++M FV  QIV+AVAKV+KENH  L  LIEDA+SGKG
Sbjct:  749 GPSFLAFETRTQTPGVAYGDKFTVVNQYVLTKEGPEACRLQSSSQTDFSDRIMGFVHNQIVAAVAKVSKENHGHLQSLIEDAISGKG 835
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BLAST of mRNA_S-dermatodea_contig10742.509.1 vs. uniprot
Match: A0A6H5JEG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEG8_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 2.810e-6
Identity = 23/35 (65.71%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 GPSFMAYESRNRTPGVSFGDKFVVVLQFVLIKEGP 105
            GPS +A+E+R +TPGV +GDKF VV Q+VL KEGP
Sbjct:  785 GPSLLAFETRTQTPGVPYGDKFTVVNQYVLTKEGP 819
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10742.509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3B6_ECTSI3.180e-3065.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEG8_9PHAE2.810e-665.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10742contigS-dermatodea_contig10742:155..1090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.8
Seed ortholog evalue2e-23
Seed eggNOG ortholog2880.D7G3B6
KEGG rclassRC00299
KEGG koko:K01613,ko:K05039,ko:K05841,ko:K12380
KEGG TC2.A.22.3
KEGG ReactionR02055
KEGG Pathwayko00564,ko01100,ko01110,ko04013,ko04014,map00564,map01100,map01110,map04013,map04014
KEGG ModuleM00093
GOsGO:0003674,GO:0003824,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0006629,GO:0008047,GO:0008150,GO:0008152,GO:0008194,GO:0008202,GO:0009898,GO:0009966,GO:0009968,GO:0010646,GO:0010648,GO:0015020,GO:0015630,GO:0016020,GO:0016125,GO:0016740,GO:0016757,GO:0016758,GO:0016906,GO:0023051,GO:0023057,GO:0023058,GO:0030234,GO:0030695,GO:0031224,GO:0031226,GO:0031235,GO:0031252,GO:0031256,GO:0035251,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043547,GO:0044093,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0046527,GO:0046578,GO:0046580,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0051056,GO:0051058,GO:0051336,GO:0051345,GO:0051505,GO:0051506,GO:0051507,GO:0051508,GO:0051509,GO:0060589,GO:0065007,GO:0065009,GO:0071704,GO:0071944,GO:0098552,GO:0098562,GO:0098772,GO:1901360,GO:1901615,GO:1902531,GO:1902532
EggNOG free text desc.intracellular sterol transport
EggNOG OGsKOG1032@1,KOG1032@2759
EC2.4.1.173,4.1.1.65
COG Functional cat.S
CAZyGT1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko02000
Hectar predicted targeting categoryother localisation
Exons2
Model size261
Cds size249
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10742.509.1prot_S-dermatodea_contig10742.509.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10742 167..1090 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924171.6518323-UTR-S-dermatodea_contig10742:154..1661622924171.6518323-UTR-S-dermatodea_contig10742:154..166Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10742 155..166 +
1694079066.7514467-UTR-S-dermatodea_contig10742:154..1661694079066.7514467-UTR-S-dermatodea_contig10742:154..166Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10742 155..166 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924171.664115-CDS-S-dermatodea_contig10742:166..2651622924171.664115-CDS-S-dermatodea_contig10742:166..265Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10742 167..265 +
1694079066.7618551-CDS-S-dermatodea_contig10742:166..2651694079066.7618551-CDS-S-dermatodea_contig10742:166..265Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10742 167..265 +
1622924171.6784089-CDS-S-dermatodea_contig10742:940..10901622924171.6784089-CDS-S-dermatodea_contig10742:940..1090Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10742 941..1090 +
1694079066.769463-CDS-S-dermatodea_contig10742:940..10901694079066.769463-CDS-S-dermatodea_contig10742:940..1090Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10742 941..1090 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10742.509.1

>prot_S-dermatodea_contig10742.509.1 ID=prot_S-dermatodea_contig10742.509.1|Name=mRNA_S-dermatodea_contig10742.509.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=83bp
MAYESRNRTPGVSFGDKFVVVLQFVLIKEGPNKCRLQTSAQANVSDKVMS
FVQGQIVSAVAKVTKENHHQLLGLIEDALSGKG
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mRNA from alignment at S-dermatodea_contig10742:155..1090+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10742.509.1 ID=mRNA_S-dermatodea_contig10742.509.1|Name=mRNA_S-dermatodea_contig10742.509.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=936bp|location=Sequence derived from alignment at S-dermatodea_contig10742:155..1090+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCCCGTCGTTTATGGCGTACGAGTCGCGGAATCGAACCCCGGGGGTATC
GTTTGGCGACAAGTTTGTGGTGGTGCTACAGTTCGTGCTCATCAAAGAGG
GTCCCAACAAGGTGCCGTAAGGGTTGAGGTCAGGATCCAGGGTGCAGAGT
TAAAACAGTGTTCGGGACGGTAGGGGCGTAGAGCTAAAAGGCTAAAGAGC
CTCTATATAATAAATTAGCCTATCGTGGTTCAGTAGGTCTCTTGGTGTGC
GTGTGTGTGTGTGTGTGTGTGTGTGTTTTTTTTTCTTCTTTTTTTCCCCT
CTTGTTTTGTTATCTTTATTAGCCACGTGCTTTCGGTTGATGTTCTGACT
ATGTCTCCGGCACCCACGGCAGTGTTATTTGGACAAGAGGTACTGGAGTA
CTGTATAGCGATTGTTTGAGCAACATGAACAGGAGTGCTCTCTCTACGAT
GGCGTGGTGAACACCAGTCCTTCAAACGCCAAGGCGCATTCGAATCATCG
CCACGCCCCGCCCCGCCCCATCCCTGCATACGCGAATGAAAACATGGGGT
CACGGCGTGGGATCGTCTTGTTTGGGGGCTTACAAGTGACCCCACCCACG
CTCCCCTTAACCATCACCCTAGTTGGAAGGAACGATTGACCATCGGCGAT
CGATCCTGTGGGAACAAAGCTCCGCCCCCTCGAGGACGCGTGGTCAATGG
TCTAACAGCAAAGACATGCAAAACGTGAGCACCACCCCCCCTCCTCCCCA
CCCCCCATCTCTCCCTATCCCAATCCTTCCTCTCAGTGCCGACTGCAAAC
ATCGGCACAAGCGAACGTCAGCGACAAGGTGATGAGCTTCGTGCAGGGCC
AGATCGTCTCCGCCGTTGCCAAGGTCACGAAGGAAAACCACCACCAGCTG
CTCGGCCTCATCGAGGACGCGCTCAGCGGGAAGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10742:155..1090+

>mRNA_S-dermatodea_contig10742.509.1 ID=mRNA_S-dermatodea_contig10742.509.1|Name=mRNA_S-dermatodea_contig10742.509.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at S-dermatodea_contig10742:155..1090+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGTACGAGTCGCGGAATCGAACCCCGGGGGTATCGTTTGGCGACAA
GTTTGTGGTGGTGCTACAGTTCGTGCTCATCAAAGAGGGTCCCAACAAGA
TGGCGTACGAGTCGCGGAATCGAACCCCGGGGGTATCGTTTGGCGACAAG
TTTGTGGTGGTGCTACAGTTCGTGCTCATCAAAGAGGGTCCCAACAAGTG
CCGACTGCAAACATCGGCACAAGCGAACGTCAGCGACAAGGTGATGAGCT
TCGTGCAGGGCCAGATCGTCTCCGCCGTTGCCAAGGTCACGAAGGAAAAC
CACCACCAGCTGCTCGGCCTCATCGAGGACGCGCTCAGCGGGAAGGGGTG
CCGACTGCAAACATCGGCACAAGCGAACGTCAGCGACAAGGTGATGAGCT
TCGTGCAGGGCCAGATCGTCTCCGCCGTTGCCAAGGTCACGAAGGAAAAC
CACCACCAGCTGCTCGGCCTCATCGAGGACGCGCTCAGCGGGAAGGGG
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