mRNA_S-dermatodea_contig1074.506.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1074.506.1
Unique NamemRNA_S-dermatodea_contig1074.506.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig1074.506.1 vs. uniprot
Match: A0A7S3XZ48_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZ48_HETAK)

HSP 1 Score: 169 bits (428), Expect = 2.970e-52
Identity = 76/107 (71.03%), Postives = 92/107 (85.98%), Query Frame = 1
Query:   16 VEDIFSYARHNRVDDLERMMDQGVSVNVRDGHGNTVLIVACQNGHKRALKAALRRGANPNAVNNRGNSALHFCYAFGYGETLGRYLMEKGADSSIRNRSGLVCYDGI 336
            +ED+FSYARHNRVDDLER++D G+ VN+RD +GNTVL VACQNGHKRA KAALRRGA+ NA N RGN+ LHFC+ +GYGETLG+YL+ KGAD +IRN  G+ CY+GI
Sbjct:   16 LEDVFSYARHNRVDDLERLLDAGMPVNIRDQYGNTVLCVACQNGHKRAAKAALRRGADINARNYRGNTPLHFCFTYGYGETLGQYLISKGADPTIRNNDGVTCYEGI 122          
BLAST of mRNA_S-dermatodea_contig1074.506.1 vs. uniprot
Match: A0A7S2MBB0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MBB0_9STRA)

HSP 1 Score: 165 bits (418), Expect = 2.350e-49
Identity = 72/108 (66.67%), Postives = 92/108 (85.19%), Query Frame = 1
Query:   16 VEDIFSYARHNRVDDLERMMDQGVSVNVRDGHGNTVLIVACQNGHKRALKAALRRGANPNAVNNRGNSALHFCYAFGYGETLGRYLMEKGADSSIRNRSGLVCYDGIG 339
            VEDIFSYARHNR +D+ER++DQG+ VN+RD  GNT+L ++CQNG+KR  KAALRRGAN NA N RGN+ LHFCY +GYG+TLG+YL+ KG D+SI NR+GL C++G+G
Sbjct:  120 VEDIFSYARHNRFEDIERLLDQGIPVNIRDKTGNTILAISCQNGNKRVAKAALRRGANINAQNYRGNTPLHFCYTYGYGDTLGQYLISKGGDTSILNRAGLTCFEGLG 227          
BLAST of mRNA_S-dermatodea_contig1074.506.1 vs. uniprot
Match: A0A2D4BHZ8_PYTIN (Proteasome subunit alpha, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BHZ8_PYTIN)

HSP 1 Score: 160 bits (405), Expect = 3.040e-45
Identity = 72/105 (68.57%), Postives = 88/105 (83.81%), Query Frame = 1
Query:   22 DIFSYARHNRVDDLERMMDQGVSVNVRDGHGNTVLIVACQNGHKRALKAALRRGANPNAVNNRGNSALHFCYAFGYGETLGRYLMEKGADSSIRNRSGLVCYDGI 336
            D+FS ARHNRVD +  M+DQGVSVN RD HGNT+L +ACQNG KR  K ALRRGAN N+ NNRGN+ALHFC+A+GYG+TLG YL+ KGAD++I N +GL+C+DGI
Sbjct:  318 DVFSAARHNRVDSVAYMLDQGVSVNARDAHGNTILSIACQNGLKRMAKLALRRGANINSQNNRGNTALHFCFAYGYGDTLGEYLLSKGADATIANDAGLLCFDGI 422          
BLAST of mRNA_S-dermatodea_contig1074.506.1 vs. uniprot
Match: A0A8K1FJV6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJV6_PYTOL)

HSP 1 Score: 147 bits (371), Expect = 4.240e-42
Identity = 66/105 (62.86%), Postives = 82/105 (78.10%), Query Frame = 1
Query:   22 DIFSYARHNRVDDLERMMDQGVSVNVRDGHGNTVLIVACQNGHKRALKAALRRGANPNAVNNRGNSALHFCYAFGYGETLGRYLMEKGADSSIRNRSGLVCYDGI 336
            D+FS ARHNR+D +  M+DQG+SVN +D HGNT+L +ACQNG KR  K ALRRGAN N     GN+ALHFC+A+GYG++LG YL+ KGAD+ I N  GLVCY+GI
Sbjct:  128 DVFSAARHNRIDSVTYMLDQGISVNSKDAHGNTILSIACQNGLKRMAKLALRRGANINXXXXXGNTALHFCFAYGYGDSLGEYLISKGADTRIGNDDGLVCYEGI 232          
BLAST of mRNA_S-dermatodea_contig1074.506.1 vs. uniprot
Match: G4Z035_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4Z035_PHYSP)

HSP 1 Score: 145 bits (367), Expect = 8.500e-42
Identity = 68/105 (64.76%), Postives = 83/105 (79.05%), Query Frame = 1
Query:   22 DIFSYARHNRVDDLERMMDQGVSVNVRDGHGNTVLIVACQNGHKRALKAALRRGANPNAVNNRGNSALHFCYAFGYGETLGRYLMEKGADSSIRNRSGLVCYDGI 336
            D+FS ARHNR D +  M+DQGV VN RD  GNT+L +ACQNG KR  K ALRRGAN N+ NNRGN+ALHFC+++GYG++LG YL+ KGAD++I N  GLVCY GI
Sbjct:  103 DLFSAARHNRYDSVVYMLDQGVPVNSRDQFGNTLLSIACQNGLKRIAKLALRRGANINSQNNRGNTALHFCFSYGYGDSLGAYLISKGADTTIENDDGLVCYYGI 207          
BLAST of mRNA_S-dermatodea_contig1074.506.1 vs. uniprot
Match: A0A485KLK5_9STRA (Aste57867_8880 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KLK5_9STRA)

HSP 1 Score: 147 bits (370), Expect = 8.540e-42
Identity = 67/105 (63.81%), Postives = 82/105 (78.10%), Query Frame = 1
Query:   22 DIFSYARHNRVDDLERMMDQGVSVNVRDGHGNTVLIVACQNGHKRALKAALRRGANPNAVNNRGNSALHFCYAFGYGETLGRYLMEKGADSSIRNRSGLVCYDGI 336
            D+FS ARHNRVDD+  M+D G+ VN++D +GN++L++ACQNG KR  K  LRRGAN NA N RGN+ LHFCYA+GYGETLG YL+ KGAD +IRN   L CY GI
Sbjct:  141 DVFSLARHNRVDDVRDMLDSGLPVNIQDAYGNSLLLIACQNGLKRLAKELLRRGANINAQNTRGNTPLHFCYAYGYGETLGAYLISKGADVTIRNGQDLECYYGI 245          
BLAST of mRNA_S-dermatodea_contig1074.506.1 vs. uniprot
Match: A0A0W8D3U4_PHYNI (Histone-lysine N-methyltransferase n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D3U4_PHYNI)

HSP 1 Score: 145 bits (365), Expect = 1.110e-41
Identity = 67/105 (63.81%), Postives = 82/105 (78.10%), Query Frame = 1
Query:   22 DIFSYARHNRVDDLERMMDQGVSVNVRDGHGNTVLIVACQNGHKRALKAALRRGANPNAVNNRGNSALHFCYAFGYGETLGRYLMEKGADSSIRNRSGLVCYDGI 336
            D+FS ARHN  D +  M+DQGV VN RD  GNT+L +ACQNG KR  K ALRRGAN N+ NNRGN+ALHFC+A+GYG++LG YL+ KGAD++I N  G+VCY GI
Sbjct:   84 DLFSAARHNHYDSVIYMLDQGVPVNSRDAFGNTLLTIACQNGLKRITKLALRRGANINSQNNRGNTALHFCFAYGYGDSLGAYLISKGADTTIENDDGMVCYYGI 188          
BLAST of mRNA_S-dermatodea_contig1074.506.1 vs. uniprot
Match: H3GFG3_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GFG3_PHYRM)

HSP 1 Score: 145 bits (365), Expect = 2.900e-41
Identity = 67/105 (63.81%), Postives = 81/105 (77.14%), Query Frame = 1
Query:   22 DIFSYARHNRVDDLERMMDQGVSVNVRDGHGNTVLIVACQNGHKRALKAALRRGANPNAVNNRGNSALHFCYAFGYGETLGRYLMEKGADSSIRNRSGLVCYDGI 336
            D+FS  RHNR D +  M+DQGV VN RD  GNT+L +ACQNG KR  K ALRRGAN N  NNRGN+ALHFC+A+GYG++LG YL+ KGAD++I N  G+VCY GI
Sbjct:  122 DLFSATRHNRFDSVTYMLDQGVPVNSRDAFGNTLLSIACQNGLKRIAKLALRRGANINCQNNRGNTALHFCFAYGYGDSLGAYLISKGADTTIENDDGVVCYYGI 226          
BLAST of mRNA_S-dermatodea_contig1074.506.1 vs. uniprot
Match: D0NFS1_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NFS1_PHYIT)

HSP 1 Score: 143 bits (361), Expect = 5.630e-41
Identity = 67/105 (63.81%), Postives = 81/105 (77.14%), Query Frame = 1
Query:   22 DIFSYARHNRVDDLERMMDQGVSVNVRDGHGNTVLIVACQNGHKRALKAALRRGANPNAVNNRGNSALHFCYAFGYGETLGRYLMEKGADSSIRNRSGLVCYDGI 336
            D+FS ARHN  D +  M+D  VSVN RD  GNT+L +ACQNG KR  K ALRRGAN N+ NNRGN+ALHFC+A+GYG++LG YL+ KGAD++I N  GLVCY GI
Sbjct:   96 DLFSAARHNHYDSVVYMLDNSVSVNSRDAFGNTLLSIACQNGLKRITKLALRRGANINSQNNRGNTALHFCFAYGYGDSLGAYLISKGADTTIENDDGLVCYYGI 200          
BLAST of mRNA_S-dermatodea_contig1074.506.1 vs. uniprot
Match: W2H644_PHYPR (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2H644_PHYPR)

HSP 1 Score: 145 bits (365), Expect = 7.360e-41
Identity = 67/105 (63.81%), Postives = 82/105 (78.10%), Query Frame = 1
Query:   22 DIFSYARHNRVDDLERMMDQGVSVNVRDGHGNTVLIVACQNGHKRALKAALRRGANPNAVNNRGNSALHFCYAFGYGETLGRYLMEKGADSSIRNRSGLVCYDGI 336
            D+FS ARHN  D +  M+DQGV VN RD  GNT+L +ACQNG KR  K ALRRGAN N+ NNRGN+ALHFC+A+GYG++LG YL+ KGAD++I N  G+VCY GI
Sbjct:  157 DLFSAARHNHYDSVIYMLDQGVPVNSRDAFGNTLLTIACQNGLKRITKLALRRGANINSQNNRGNTALHFCFAYGYGDSLGAYLISKGADTTIENDDGMVCYYGI 261          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1074.506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XZ48_HETAK2.970e-5271.03Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2MBB0_9STRA2.350e-4966.67Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A2D4BHZ8_PYTIN3.040e-4568.57Proteasome subunit alpha, putative n=1 Tax=Pythium... [more]
A0A8K1FJV6_PYTOL4.240e-4262.86Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
G4Z035_PHYSP8.500e-4264.76Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A485KLK5_9STRA8.540e-4263.81Aste57867_8880 protein n=1 Tax=Aphanomyces stellat... [more]
A0A0W8D3U4_PHYNI1.110e-4163.81Histone-lysine N-methyltransferase n=1 Tax=Phytoph... [more]
H3GFG3_PHYRM2.900e-4163.81Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
D0NFS1_PHYIT5.630e-4163.81Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
W2H644_PHYPR7.360e-4163.81Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1074contigS-dermatodea_contig1074:21421..22983 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.1
Seed ortholog evalue4.9e-33
Seed eggNOG ortholog36331.EPrPI00000019024
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-08_004000.1
Exons4
Model size345
Cds size345
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1074.506.1prot_S-dermatodea_contig1074.506.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1074 21421..22983 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924171.4778006-CDS-S-dermatodea_contig1074:21420..214471622924171.4778006-CDS-S-dermatodea_contig1074:21420..21447Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1074 21421..21447 -
1694079066.6765773-CDS-S-dermatodea_contig1074:21420..214471694079066.6765773-CDS-S-dermatodea_contig1074:21420..21447Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1074 21421..21447 -
1622924171.4876504-CDS-S-dermatodea_contig1074:22023..220971622924171.4876504-CDS-S-dermatodea_contig1074:22023..22097Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1074 22024..22097 -
1694079066.689164-CDS-S-dermatodea_contig1074:22023..220971694079066.689164-CDS-S-dermatodea_contig1074:22023..22097Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1074 22024..22097 -
1622924171.5051734-CDS-S-dermatodea_contig1074:22452..226161622924171.5051734-CDS-S-dermatodea_contig1074:22452..22616Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1074 22453..22616 -
1694079066.6996038-CDS-S-dermatodea_contig1074:22452..226161694079066.6996038-CDS-S-dermatodea_contig1074:22452..22616Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1074 22453..22616 -
1622924171.518976-CDS-S-dermatodea_contig1074:22903..229831622924171.518976-CDS-S-dermatodea_contig1074:22903..22983Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1074 22904..22983 -
1694079066.7097247-CDS-S-dermatodea_contig1074:22903..229831694079066.7097247-CDS-S-dermatodea_contig1074:22903..22983Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1074 22904..22983 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1074.506.1

>prot_S-dermatodea_contig1074.506.1 ID=prot_S-dermatodea_contig1074.506.1|Name=mRNA_S-dermatodea_contig1074.506.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=115bp
FRQNQVEDIFSYARHNRVDDLERMMDQGVSVNVRDGHGNTVLIVACQNGH
KRALKAALRRGANPNAVNNRGNSALHFCYAFGYGETLGRYLMEKGADSSI
RNRSGLVCYDGIGH*
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mRNA from alignment at S-dermatodea_contig1074:21421..22983-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1074.506.1 ID=mRNA_S-dermatodea_contig1074.506.1|Name=mRNA_S-dermatodea_contig1074.506.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1563bp|location=Sequence derived from alignment at S-dermatodea_contig1074:21421..22983- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTCCGTCAGAATCAAGTCGAAGACATATTCAGCTACGCAAGGCACAACCG CGTCGATGACCTGGAAAGGATGATGGATCAGTGAGTCCATATCCTTTTGA TGCTCGAAATGGCGGTATGTCGGTGGTATCACTCCTAGCCGTTTCCCGCC AAAAGTCCGCGTCATGTGCACGGGATCCTATGAAAGCGTGGGGTGAAGGA GCTCTTCGAACTACCGGTAGCCACTTTGAAGGGCCAACAGAGACGGACGC AGTTTGCGCGTTCGAGGAAACTTTGGAATCCAAGGGCTATCATAATCTTC GCGCTATCCTAACCGCGCTTCGATCTCAACGATGCCAGTTCATGTGCTGT TGTCTGTCGTTCGTTAGGGGCGTGTCGGTGAACGTACGGGACGGCCACGG CAACACCGTTCTCATCGTGGCGTGTCAGAACGGCCACAAGCGTGCGCTGA AGGCGGCCTTACGCCGGGGTGCAAACCCGAACGCCGTCAACAATCGCGGA AATTCCGCTCTTCACTTCTGCTACGCCTTCGGTACGTCGAGGTATTTTGT TTTGTCTGCATTATGAAGGGGTTTCCTTTGGCTCTTGGAAATTGTGTTTG GAGGACGTATAACCCCAGCTTCCGCCTCCCGCCCAAGAAATAATGCATAT GTGTGCCATTTTGAGAGGTTTTTGAGAGATATGGCAATGCACATATACGC ATATCGGGCATGGTTTCCTACACAAGAAAAACAAACCTGGTCAAAGCACT CGCAGCGTAGGAGCATTCTCAACGGTCGAGTAATTTATAATAGATTTTTG GAGTAACTTTCACATTCAAAGTGCTACCCTTTTGTTGGCCAAGCGGATAA ATGGGTACAAACGTGCAGTGGTGCTTTCCGTACCAGGATACGGCGAAACC CTCGGACGTTACTTAATGGAAAAAGGGGCCGATTCGTCGATCAGAAACCG GAGCGGCCTGGTGAGTACGCCCTGAGGATGTAGTCGTGGGGAAACAACTT GTTTGAAACACACAATGAAAGAAGGGCGTCGGGTGGGATTGTATGCAGAG ACGCTCAAAATAGTGTGGGGACGACAAGGGGGGGGGGGTGTTCTTGAAAA GGTGGGACCCCAACGCTCGCTCTATGATTCTGAAATATTATTGTTTTTTG GGGTGTTTCGCTCACAATATGTTTCTAAAATCTTTTTATTTTAGGGGTGA AACGCGTGATGCGCCGACATCTTTGTATAGATCTCAGGTAGATGCTGTTG ATTTTCCCCCTATGAGAAGATCATGTCTTGGAAAGTAATGAATGCCACGA AGGAACATGACCGACCGAAGCGCGACTAGAAGTTGCCCGCTTTGGGTAAA ACGCCAGTCTATCGCGACGAAATTCCTCCAAAACGAGTATCCCCCCACGT ATGCGTTCCACCGGAGTACCTACCAAAGAGCGTTCGTCGCACGACAATCG TTCATGTCAACGCAAACGCCGCTATCACAGCGTCAAACCTCCCATATAAT ATTGTGTCGAACCTGTCCCCGTGCTGCCGGGCGCAGGTTTGCTACGACGG CATCGGACACTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig1074:21421..22983-

>mRNA_S-dermatodea_contig1074.506.1 ID=mRNA_S-dermatodea_contig1074.506.1|Name=mRNA_S-dermatodea_contig1074.506.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at S-dermatodea_contig1074:21421..22983- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTCCGTCAGAATCAAGTCGAAGACATATTCAGCTACGCAAGGCACAACCG
CGTCGATGACCTGGAAAGGATGATGGATCATTCCGTCAGAATCAAGTCGA
AGACATATTCAGCTACGCAAGGCACAACCGCGTCGATGACCTGGAAAGGA
TGATGGATCAGGGCGTGTCGGTGAACGTACGGGACGGCCACGGCAACACC
GTTCTCATCGTGGCGTGTCAGAACGGCCACAAGCGTGCGCTGAAGGCGGC
CTTACGCCGGGGTGCAAACCCGAACGCCGTCAACAATCGCGGAAATTCCG
CTCTTCACTTCTGCTACGCCTTCGGGGCGTGTCGGTGAACGTACGGGACG
GCCACGGCAACACCGTTCTCATCGTGGCGTGTCAGAACGGCCACAAGCGT
GCGCTGAAGGCGGCCTTACGCCGGGGTGCAAACCCGAACGCCGTCAACAA
TCGCGGAAATTCCGCTCTTCACTTCTGCTACGCCTTCGGATACGGCGAAA
CCCTCGGACGTTACTTAATGGAAAAAGGGGCCGATTCGTCGATCAGAAAC
CGGAGCGGCCTGGATACGGCGAAACCCTCGGACGTTACTTAATGGAAAAA
GGGGCCGATTCGTCGATCAGAAACCGGAGCGGCCTGGTTTGCTACGACGG
CATCGGACACTGAGTTTGCTACGACGGCATCGGACACTGA
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