mRNA_S-dermatodea_contig1074.505.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1074.505.1
Unique NamemRNA_S-dermatodea_contig1074.505.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1074.505.1 vs. uniprot
Match: A0A6H5KFT4_9PHAE (Gamma-glutamylcyclotransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFT4_9PHAE)

HSP 1 Score: 227 bits (579), Expect = 1.550e-64
Identity = 121/225 (53.78%), Postives = 152/225 (67.56%), Query Frame = 3 
Query:  546 GGGEG-QSVVNYFAYGANMSPSVLTAKRGVKPLASLPVEAVGFAASRNRE--------NVRLRSRRLEEEDRSVCLSFCHRAGYATIARSPGPPQAWGISPGVHGVLHILSPSDMERIAASETGYKRCEVEVKTPAGTTHEAVGFVSNPTQLLPASVPPTDRYLSLLREGATYHGVNKDYQLWLAGLPSVPSRDAEAYPERTNTPSQAATNMVVAVSVVTAIVVA 1193
            GGGE   + + YFAYGANM PS+LT+KRGV P ASLP EA  F+    R          V  R +   ++ R +C+ FCHRAGYAT+A SPGPPQ+W  SPG HGVLH++SPS +E+IAASE GY++  V+V+TP      AV FVSNP Q LPASVPPT RYLSLL++GA YH V++DY+ WLA LPSV   D     +R  TPS+  T+ V+AV+   A+V A
Sbjct:  119 GGGEDCDTALLYFAYGANMCPSILTSKRGVNPFASLPAEATHFSTGTRRNPSATDGVGRVIRRDKTDAQKSRGMCVCFCHRAGYATLAHSPGPPQSWETSPGAHGVLHVISPSSLEKIAASENGYEKRLVDVETPTRERDIAVCFVSNPWQALPASVPPTSRYLSLLQDGAAYHNVDEDYRAWLARLPSVRPEDETMSSDRVRTPSKIVTDTVLAVAAFAAVVAA 343
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BLAST of mRNA_S-dermatodea_contig1074.505.1 vs. uniprot
Match: A0A2P6VPN7_9CHLO (Poly(A) polymerase central domain containing n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VPN7_9CHLO)

HSP 1 Score: 104 bits (259), Expect = 7.320e-20
Identity = 74/194 (38.14%), Postives = 96/194 (49.48%), Query Frame = 3 
Query:  540 GTGGGEGQSVVNYFAYGANMSPSVLTAKRGVKPLASLPVEAVGFAASRNRENVRLRSRRLEEEDRSVCLSFCHRAGYATIAR-SPGPPQAWGISPGVHGVLHILSPSDMERIAASETGYKRCEVEVKTPAGTTH-EAVGFVSNPTQLLPASVPPTDRYLSLLREGATYHGVNKDYQLWLAGLPSVPSRD-AEAY 1112
            G GG    + V  FAYGANMSP+ L   RG+ PL SLP    G+                        L+F HR G  ++A+ +PG     G+ PG  GVLH LS +D  R+   E  Y   EV+V+   G     AV  V+     + A +PP  RYLSLL+EGA +  ++  Y  WL  LPSV SRD  +AY
Sbjct:  259 GLGGARADASVWQFAYGANMSPTKLGGARGIHPLESLPAVLPGWR-----------------------LAFDHRGGMGSLAQLAPGEDAPGGL-PGAQGVLHRLSAADYGRLVNMEHEYLPVEVKVQPCGGAEPLPAVALVTPAAARIAAGLPPPQRYLSLLQEGAHHWELDPRYTAWLDSLPSVDSRDRGDAY 428
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BLAST of mRNA_S-dermatodea_contig1074.505.1 vs. uniprot
Match: E1Z8K7_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z8K7_CHLVA)

HSP 1 Score: 103 bits (256), Expect = 1.190e-19
Identity = 68/193 (35.23%), Postives = 89/193 (46.11%), Query Frame = 3 
Query:  534 IEGTGGGEGQSVVNYFAYGANMSPSVLTAKRGVKPLASLPVEAVGFAASRNRENVRLRSRRLEEEDRSVCLSFCHRAGYATIARSPGPPQAWGISPGVHGVLHILSPSDMERIAASETGYKRCEVEVKT-PAGTTHEAVGFVSNPTQLLPASVPPTDRYLSLLREGATYHGVNKDYQLWLAGLPSVPSRDAEA 1109
            + G G       V  FAYGANM P  L   RG+ PL SLP +  G+                        LSF HR     + R+ G   + G    VHG+LH LSP+D  R+A  E  Y+  EVEV+    G    AV F +   + +   +PP  RYL LL+EGA +  ++  Y  WL G+ SV SR   A
Sbjct:  227 LVGIGAARPDGSVWNFAYGANMCPRKLGGARGLHPLESLPAQLPGWR-----------------------LSFTHRGAMGNLVRTAGGAASGGAPEAVHGLLHRLSPADFSRLANMEHEYRPVEVEVQPYGGGPAVPAVAFATPEGRCIADGLPPPQRYLELLQEGARHWQLDPAYVQWLDGMQSVDSRQRGA 396
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BLAST of mRNA_S-dermatodea_contig1074.505.1 vs. uniprot
Match: A0A8J9RLX6_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RLX6_9CHLO)

HSP 1 Score: 99.4 bits (246), Expect = 2.090e-18
Identity = 66/183 (36.07%), Postives = 87/183 (47.54%), Query Frame = 3 
Query:  552 GEGQSVVNYFAYGANMSPSVLTAKRGVKPLASLPVEAVGFAASRNRENVRLRSRRLEEEDRSVCLSFCHRAGYATIARSPGPPQAWGISPGVHGVLHILSPSDMERIAASETGYKRCEVEVKTPAGTTH-EAVGFVSNPTQLLPASVPPTDRYLSLLREGATYHGVNKDYQLWLAGLPSVPSR 1097
            G GQ    YFAYGANM    LT  RG+ PL ++P    G+                        LSF HR     + ++     +      VHGVL+ +S  DM R+   E  Y+  EVEV+   G     A+ F+S P  L+P  +PP DRYL LL++GA    ++  Y  WL  LPSVPSR
Sbjct:  226 GAGQQGAWYFAYGANMCTGKLTGSRGITPLEAVPGCLRGWR-----------------------LSFNHRGAMGNLMQNQDSKGS------VHGVLYRISNLDMARLTHMEHEYRPTEVEVEEYDGRQAVRALAFISPPDLLIPEGMPPADRYLKLLQDGAREWRLDSGYSAWLDSLPSVPSR 379
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BLAST of mRNA_S-dermatodea_contig1074.505.1 vs. uniprot
Match: A0A7S0ZVY5_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S0ZVY5_NOCSC)

HSP 1 Score: 85.5 bits (210), Expect = 1.960e-13
Identity = 60/178 (33.71%), Postives = 84/178 (47.19%), Query Frame = 3 
Query:  579 FAYGANMSPSVLTAKRGVKPLASLPVEAVGFAASRNRENVRLRSRRLEEEDRSVCLSFCHRAGYATIARSPGPPQAWGISPGVHGVLHILSPSDMERIAASETGYKRCEVEVKTPAGTTHEAVGFVSNPTQLLPASVPPTDRYLSLLREGATYHGVNKDYQLWLAGLPSVPSRDAEAY 1112
            FA+GAN++P  L  KR ++P+ S P    G+                        L F H+ G   I    G P   G+ P V G+L +L   D +R+A+ E  Y   EV V+   G    A  FVS P   L  SVPP +RYL+L+++GA+  G+ + YQ WL  L SV  +    Y
Sbjct:  472 FAFGANINPWKLKEKRNIQPVESQPGRLRGWR-----------------------LVFNHKGGMGNI-EPHGVPD--GV-PDVQGMLLLLKERDFQRLASMEHEYTTAEVAVEAYDGRRVHARAFVSPPQWRLQESVPPPERYLNLIKDGASSSGLEEGYQRWLHSLASVKGQRGTQY 622
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BLAST of mRNA_S-dermatodea_contig1074.505.1 vs. uniprot
Match: A0A1Y1HZF9_KLENI (RNA ligase/cyclic nucleotide phosphodiesterase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HZF9_KLENI)

HSP 1 Score: 82.8 bits (203), Expect = 6.390e-13
Identity = 60/204 (29.41%), Postives = 92/204 (45.10%), Query Frame = 3 
Query:  501 EGATTTTYLCAIEGTGGGEGQSVVNYFAYGANMSPSVLTAKRGVKPLASLPVEAVGFAASRNRENVRLRSRRLEEEDRSVCLSFCHRAGYATIARSPGPPQAWGISPGVHGVLHILSPSDMERIAASETGYKRCEVEVKTPAGT-THEAVGFVSNPTQLLPASVPPTDRYLSLLREGATYHGVNKDYQLWLAGLPSVPSRDAEA 1109
            E  T++      E +  G+   V N FAYGAN++   L   R + P+ S+P    G+                        L+F HR     +  SPG           HG+LH ++     R+   E GY   +V+V+   G  +  AV F S P +L+   +PP+ RYL+L++ GA   G++ +Y  WL  LP+V   DA+A
Sbjct:  251 EDPTSSREQVGSEPSTSGQADLVWN-FAYGANVNKHKLEVVRRITPVDSVPGRLAGYR-----------------------LAFNHRGAMGNVVESPGDA--------CHGLLHQVTREQFNRLREMENGYSAVDVDVEPYDGRGSIRAVVFCSRPEELIQDGLPPSTRYLNLIKSGAKEWGLHPNYVAWLDSLPAV---DAQA 419
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BLAST of mRNA_S-dermatodea_contig1074.505.1 vs. uniprot
Match: A0A7S3VR29_DUNTE (Gamma-glutamylcyclotransferase n=3 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VR29_DUNTE)

HSP 1 Score: 79.7 bits (195), Expect = 9.730e-13
Identity = 65/191 (34.03%), Postives = 91/191 (47.64%), Query Frame = 3 
Query:  576 YFAYGANMSPSVLTAKRGVKPLASLPVEAVGFAASRNRENVRLRSRRLEEEDRSVCL-------------SFCHRAGYATIARSPGPPQAWGISPGVHGVLHILSPSDMERIAASE-----------TGYK----RCEVEVK--TPAGTTHEAVGFVSNPTQLLPASVPPTDRYLSLLREGATYHGVNKDY 1058
            YFA+G+NM+P VLT +RGVKPL+SLP     F+   + +        +E  DR++ L             S+ +R   +  +RS      W     VHGV+H+LS  D  R+  SE            GY+    RCE+       A T   A  F+ +P      +  P+ RYL LLREGA +HGV+ DY
Sbjct:   60 YFAFGSNMNPKVLTGRRGVKPLSSLPCSVPRFSMGFHCQGYST----VEPFDRALPLESGLQGSTTPPIGSYPNRV-QSIKSRSRAQQSRWVYGHTVHGVVHLLSKDDWARVQLSEGILPPFSQVLQVGYQVIRVRCELYDGEWVCADTLSAAPAFLGDPW-----TSRPSLRYLDLLREGARHHGVDPDY 240
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BLAST of mRNA_S-dermatodea_contig1074.505.1 vs. uniprot
Match: A0A6V2TEL4_HETAK (Gamma-glutamylcyclotransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2TEL4_HETAK)

HSP 1 Score: 78.6 bits (192), Expect = 3.810e-12
Identity = 62/209 (29.67%), Postives = 93/209 (44.50%), Query Frame = 3 
Query:  561 QSVVNYFAYGANMSPSVLTAKRGVKPLASLPVEAVGFAASRNRENVRLRSRRLEEEDRSVCLSFCHRAGYATIA------------------------------RSPGPPQAWGISPGVHGVLHILSPSDME-RIAASETGYKRCEVEVKTPAGTTH--EAVGFVSNPTQLLPASVPPTDRYLSLLREGATYHGVNKDYQLWLAGLPSV 1088
            + +V YF+YGANMS  VL  +  + P  S P                    R+++ D  V LSF HR G+AT+                               R+P   +A  +  G HGVLH +    ++  +A  E+GY+   + V+ P G      A  FVS+P   L  S+PP+ RYLSL+++GA  H + + Y  WL  + S+
Sbjct:   76 KKLVWYFSYGANMSRGVLAGRHKISPEFSYPA-------------------RVKDPDFDV-LSFSHRGGFATLIGSSDPAARGTVSEARRTKVGTTTKEAVAKERAPATREAQHVWQGAHGVLHAVPLEAVQGTLARVESGYRLRTITVQ-PYGCEELINAKAFVSSPLLKLSQSLPPSTRYLSLIKQGAKEHQLEESYIDWLYSIESI 263
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BLAST of mRNA_S-dermatodea_contig1074.505.1 vs. uniprot
Match: A0A2V0NXA9_9CHLO (Gamma-glutamylcyclotransferase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NXA9_9CHLO)

HSP 1 Score: 74.3 bits (181), Expect = 1.250e-10
Identity = 64/202 (31.68%), Postives = 86/202 (42.57%), Query Frame = 3 
Query:  576 YFAYGANMSPSVLTAKRGVKPLASLPVEAVGFAASRNRENVRLRSRRLEEEDRSVCLSFCHRA-------GYATIARSPGPPQAWGISPGVHGVLHILSPSDMERIAASE------TGYKRCEVEVKTPAGTTHEAV--GFVSNPTQLLPASVP---------PTDRYLSLLREGATYHGVNKDYQLWLAGLPSVPSRDAEA 1109
            YFAYG+NMSPSVLT +R V+P  SLP  A     S                   + L F   A       G+A  A   G P+A       HGV+H +S  +  +I  +E       GY+  EVE++  A         G V     L  A            P+ RYL LLR GA +HG++ +Y+ WL  L +  +  A A
Sbjct:   50 YFAYGSNMSPSVLTGRRRVRPRVSLPAVAPAQRLSFG----------------MIGLPFSEPAFATLLPPGHALAAGGAGAPEA-------HGVVHAVSGEEWSQICRTEGVGARGVGYQVIEVELELYASXXXXXXXXGGVVRALTLQGAEASLHSSGRRALPSRRYLDLLRSGAAHHGLDPEYRAWLDSLEAYEAARAPA 228
[Close]
BLAST of mRNA_S-dermatodea_contig1074.505.1 vs. uniprot
Match: A0A1Y2GAB5_9FUNG (Gamma-glutamylcyclotransferase n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GAB5_9FUNG)

HSP 1 Score: 68.9 bits (167), Expect = 8.890e-9
Identity = 58/215 (26.98%), Postives = 91/215 (42.33%), Query Frame = 3 
Query:  507 ATTTTYLCAIEGTGGGEGQSVVNYFAYGANMSPSVLTAKRGVKPLASLPVEAVG----------------FAASRNRENVRLRSRRLEEEDRSVCLSFCHRAGYATIARSPGPPQAWGISPGVHGVLHILSPSDMERIAASE--------TGYKRCEVEVKTPAGTTHEAVGFVSNPTQLLPASVPPTDRYLSLLREGATYHGVNKDYQLWLAGL 1079
            A TTT   A       +G+  V Y AYG+NM P VLT +R +KP+ S+PV   G                FA+    +  R+  +   +E   V +   +   +    R P  P A    P + GV H ++  D + +  SE        TGY + EV+ +      H     +      + +   P+ RY +LL  GA YH ++  YQ +L+ +
Sbjct:   15 AATTTAAAA-------DGEKTVWYLAYGSNMEPKVLTGRRKIKPIESVPVIVPGYWLSFDIGGIPFVEPCFASILKMDPARMHDKAYAQE---VFVRTQYGREFLWDERHPDHP-ARSYPPVLQGVAHKITLRDWQLVIQSEGGWGHDVPTGYNQIEVDCRVVGTNEHITTHVLEARPLSVKSHCQPSARYKALLVSGAAYHNLDPAYQQYLSTI 218
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1074.505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5KFT4_9PHAE1.550e-6453.78Gamma-glutamylcyclotransferase n=2 Tax=Ectocarpus ... [more]
A0A2P6VPN7_9CHLO7.320e-2038.14Poly(A) polymerase central domain containing n=1 T... [more]
E1Z8K7_CHLVA1.190e-1935.23Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A8J9RLX6_9CHLO2.090e-1836.07Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]
A0A7S0ZVY5_NOCSC1.960e-1333.71Hypothetical protein (Fragment) n=1 Tax=Noctiluca ... [more]
A0A1Y1HZF9_KLENI6.390e-1329.41RNA ligase/cyclic nucleotide phosphodiesterase n=1... [more]
A0A7S3VR29_DUNTE9.730e-1334.03Gamma-glutamylcyclotransferase n=3 Tax=Dunaliella ... [more]
A0A6V2TEL4_HETAK3.810e-1229.67Gamma-glutamylcyclotransferase n=1 Tax=Heterosigma... [more]
A0A2V0NXA9_9CHLO1.250e-1031.68Gamma-glutamylcyclotransferase n=1 Tax=Raphidoceli... [more]
A0A1Y2GAB5_9FUNG8.890e-926.98Gamma-glutamylcyclotransferase n=1 Tax=Lobosporang... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1074contigS-dermatodea_contig1074:17384..20895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score104.0
Seed ortholog evalue1.5e-19
Seed eggNOG ortholog554065.XP_005849727.1
EggNOG free text desc.2'-5' RNA ligase superfamily
EggNOG OGs2DKMB@1,2S635@2759,34IG3@3041,37WX3@33090
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionButirosin biosynthesis, BtrG-like
Ec32 orthologEc-08_004010.1
Exons4
Model size2152
Cds size1083
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1074.505.1prot_S-dermatodea_contig1074.505.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1074 17530..19972 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924171.399145-UTR-S-dermatodea_contig1074:17383..175291622924171.399145-UTR-S-dermatodea_contig1074:17383..17529Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1074 17384..17529 +
1694079066.6191473-UTR-S-dermatodea_contig1074:17383..175291694079066.6191473-UTR-S-dermatodea_contig1074:17383..17529Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1074 17384..17529 +
1622924171.4503455-UTR-S-dermatodea_contig1074:19972..208951622924171.4503455-UTR-S-dermatodea_contig1074:19972..20895Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1074 19973..20895 +
1694079066.66599-UTR-S-dermatodea_contig1074:19972..208951694079066.66599-UTR-S-dermatodea_contig1074:19972..20895Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1074 19973..20895 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924171.4126394-CDS-S-dermatodea_contig1074:17529..181481622924171.4126394-CDS-S-dermatodea_contig1074:17529..18148Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1074 17530..18148 +
1694079066.630461-CDS-S-dermatodea_contig1074:17529..181481694079066.630461-CDS-S-dermatodea_contig1074:17529..18148Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1074 17530..18148 +
1622924171.4213974-CDS-S-dermatodea_contig1074:18730..188701622924171.4213974-CDS-S-dermatodea_contig1074:18730..18870Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1074 18731..18870 +
1694079066.6386986-CDS-S-dermatodea_contig1074:18730..188701694079066.6386986-CDS-S-dermatodea_contig1074:18730..18870Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1074 18731..18870 +
1622924171.4299123-CDS-S-dermatodea_contig1074:19127..192251622924171.4299123-CDS-S-dermatodea_contig1074:19127..19225Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1074 19128..19225 +
1694079066.647037-CDS-S-dermatodea_contig1074:19127..192251694079066.647037-CDS-S-dermatodea_contig1074:19127..19225Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1074 19128..19225 +
1622924171.4386117-CDS-S-dermatodea_contig1074:19746..199721622924171.4386117-CDS-S-dermatodea_contig1074:19746..19972Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1074 19747..19972 +
1694079066.6562593-CDS-S-dermatodea_contig1074:19746..199721694079066.6562593-CDS-S-dermatodea_contig1074:19746..19972Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1074 19747..19972 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1074.505.1

>prot_S-dermatodea_contig1074.505.1 ID=prot_S-dermatodea_contig1074.505.1|Name=mRNA_S-dermatodea_contig1074.505.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=361bp
MARPASCLRLAQRVNSGSNRVIAACLGGVLAALEVTCGDALVVCATAEGT
RVSGPGRDWDRGGSSVRQFTMGERSPWQTARKFAPGHSPSSRGRCRRETG
TIVASCLDKCIEYHGDLFEGATTTTYLCAIEGTGGGEGQSVVNYFAYGAN
MSPSVLTAKRGVKPLASLPVEAVGFAASRNRENVRLRSRRLEEEDRSVCL
SFCHRAGYATIARSPGPPQAWGISPGVHGVLHILSPSDMERIAASETGYK
RCEVEVKTPAGTTHEAVGFVSNPTQLLPASVPPTDRYLSLLREGATYHGV
NKDYQLWLAGLPSVPSRDAEAYPERTNTPSQAATNMVVAVSVVTAIVVAI
LRSGVLGEGL*
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mRNA from alignment at S-dermatodea_contig1074:17384..20895+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1074.505.1 ID=mRNA_S-dermatodea_contig1074.505.1|Name=mRNA_S-dermatodea_contig1074.505.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3512bp|location=Sequence derived from alignment at S-dermatodea_contig1074:17384..20895+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATTCCAACAAGAGGCGACGGGATTTACCCCCTAGCTCTCCTCCAAGCTTG
ACGGCAAAGCTACAAGCCCGTTGTTCTGCCGTGCTATAGCACGCACGTCA
TACATGCACATCAAAAGTGGCTTTTGGAACGACGAGGAATTGTGTCATGG
CGCGACCTGCATCCTGTCTGCGCCTGGCGCAACGCGTAAATAGCGGAAGT
AACCGGGTGATAGCTGCGTGTTTGGGGGGGGTGCTTGCTGCTCTGGAGGT
AACTTGTGGCGACGCTCTCGTAGTCTGTGCGACGGCGGAAGGGACCCGAG
TATCGGGGCCTGGCCGGGATTGGGATCGGGGAGGCAGTAGTGTTCGGCAG
TTCACGATGGGAGAGCGATCTCCTTGGCAAACGGCACGGAAATTCGCACC
AGGACATTCACCATCGAGCCGCGGTCGCTGTCGACGAGAAACCGGGACGA
TAGTAGCAAGTTGCCTGGACAAGTGCATCGAATATCACGGCGATCTTTTC
GAAGGAGCGACAACAACAACATATTTGTGCGCGATCGAAGGCACCGGTGG
GGGAGAGGGTCAAAGTGTAGTGAACTATTTCGCCTACGGGGCGAACATGA
GTCCTTCGGTGCTCACCGCAAAAAGGGGCGTGAAACCTCTCGCATCTTTG
CCGGTAGAAGCTGTGGGCTTTGCTGCTTCGCGAAACAGAGAAAACGTTCG
ACTGAGATCACGTCGACTGGAAGAAGAAGACAGGAGTGTGTGTCTGAGCT
TCTGTCACCGGGCAGGTGCGAGCGTACGAGTCTCATCATGCCCAATTCGC
AATACGGACCGTTTCCATCGGAGCTACGCAATTTTCTCACGAGATTTGAT
GCCTCACCTCACGAAACATGGGCTTTTAAAACCTGGTTACGTTTCTCACA
TTTCGTGAATTGAACCACTGCGTTTTTTTTCGTGAGTGCTCAACTCACGA
AACGTGAGCAGAGTTTTTTTTGTGTTTTTGCCGCGAGACGGCGGACATCA
GAAAAGCGGCACATTGGCTACACAGCAGGATCACGTTTCGTGAGGAATAA
AGCGCTCGATAGAAACGGCCCTTTGCCATGGTTTGTCTGGTGGACGTGAG
CATTCCAATGTTTTACCTGTTGTCGGCAGGCAGTTATCAAACGCGTGTAT
ACCGTGTATTAAAATCCCGACAACTGAAAAGTGCAGACACTCATAAAAAC
AAAGTGCGGCGGGCTCGAGAAACCACCAGACGCTCCGACTTTTTGACGAC
AGACTATTGCATGCGCAGGGGGGTTTGCCCTTCCTTGCTACAGTACCCAT
GTTCACATCGGCCTTTCTTGCACTCTCCCCCTTGCGCGAGGATGTAGGAT
ACGCTACTATTGCACGATCACCAGGGCCGCCGCAGGCCTGGGGGATATCA
CCCGGGGTGCACGGCGTGCTGCACATTCTTTCACCGTCTGACATGGAGAG
GATAGCGGCCTCCGAGACGGGGTACAAGAGATGCGAGGTGAGCGGCGCGC
TCGAGATGCGTTTGCTTCGCCCGTTTGACGGATTTGGTCATTCGCGACCC
TTCCCTTCGTGAGCGATACCCTCAGGAGGGTATCTCGTGCCGCGGAACGC
CCGGTTGAGCCCCCATCCCAGTGACACATATTGTTTCGAGTACAGAATCC
CAAACATTCCGTTTGTTCCGTCTCAGCAAGTCCAACGCGCATGCTGCTCA
TAGTTATGCTAACAACGTAGATAACATTTACATCGCCTGAGCAGGTAGAG
GTGAAGACACCGGCAGGAACGACACATGAAGCGGTTGGCTTCGTTTCGAA
CCCCACGCAGCTGCTGCCTGCGAGCGTCCCACCCACTGACAGGTAAATAC
ACGCGACGAAGGATGAGCCTCCGAGTGCGCTCTAGTGGTGATTGCTCTGT
AAGACCGTCGTGCCACCGTAATATCCGATACCTTCGCACTGATCGGTTTT
CTCGGCTGTTCCACCTGCCCTGCCTCGTCGCCTTCCCGCGATGCCTCACA
CTACGCTTCGTAGCCGCGGCATGTTCTGTGTTTTTTGTTGCAGTTCACAG
CAAAAAAGAAAGCTGACATGGCCTTTCAGCACTCTATTTAAGTCGGTTCT
CTCCAATCCTAATCGCCTACGCGACTAGACTTCCGGCAGCGCGCAAGTGA
CGAAAACATCCCCTCAACTTGGCGGAGGTTTGGCCTTCTTACCGAGGCTC
TGCACGGCGCACACGTGCGTTTTTGCATGAAATTGTATCTTCGGGTTGGA
GGTCAGCTTTGTATCTGCAATTTTATCATATATGGCGCCAGTGTCCGTCC
CGGCTATCGCACAATTGCGGGCTGAAGCCCCAGATGCTATGCTTCAAAAT
ACGTTCTTAATAGGTACTTGTCGTTGCTTCGCGAAGGAGCAACGTACCAC
GGAGTCAACAAAGACTACCAGTTATGGCTGGCAGGCCTGCCGTCCGTTCC
CTCAAGAGACGCCGAGGCGTACCCAGAGCGAACAAACACGCCGTCCCAGG
CCGCGACAAATATGGTCGTGGCTGTTTCGGTGGTTACCGCCATTGTCGTG
GCGATACTTCGGAGCGGAGTCCTCGGCGAAGGGTTGTGATCCAGGACTGC
CGTTGTCCGTAGCGCATGTAAGCAAAAGGGTTACAGGGGGGTTTGGTTTT
TGTGGTGGCTTCTGCTATCACTCACGGTTTTTGTCAGCTTCACGGGTGTG
TAATCAATGCACCAAATGCCTTCTTCGTTGCTGCTACTAAAGCTCTATAA
GCACTGGTAAAGGGGTTTCGGAGGGTGTGGGATTTGTGCGCGATTTCTCC
TTTGGTGCAGATGTTGAAGAGGCCGAAACCTTCCTTGTTCAGCAAGGTCA
CGAACACGATATCTTCACACGTTAACTAGCGATGCACATTGTGATATTAA
TATGGTGGACGTGAAACCTACTAAACGGCAATAGGCTAGAATGTGTCACG
CCGTGGCTGCAGCGGTGGGAAGAGGGCGTTTGGTGGCCCGCGGCTTGTTC
GGAATCCGCGCAATGACACCTATCATTGCTTGCAACATTGTGAGCCTGCT
CTTCAGCTGGGCATGCCAGGGCTTGAGTAAATATACTCAGAAACATCGGC
GAGGAGCTTTCAGAATCCTTGACCCACAGCGCGCTTTTCGTGTACCGGTG
GTAAATGAAGGGGCTCTTAGTATCCCAGACGGGATAGATAGAAGGCCGAA
TATAGTAGCGTAGTGTAAAAAACCAAAATGGTATCAAAGAGTGAAACGGC
GATGCCTTGCGTGTGTGACAGTCGTCCATGGTTGCTGGATACCTGAGCAC
CGTGCAGTGGGTAACCACGGACTATTCGTGAGTCCTCAAGAAGAAGTTTC
AGCATCGCCCGCGTTGTTGCTAACATTTCAGAACAAGAGTTTTTGTCGTG
GCGGGTTTTCTTTTTCCTGCCTTCCCTGGGGAAAACGGTCGACAATTTTC
GCGCATATTTGTTTAGTGCGACGAAGGGCGCCAGCGTGTGTTCCTGCGAG
CGGACATGCAAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig1074:17384..20895+

>mRNA_S-dermatodea_contig1074.505.1 ID=mRNA_S-dermatodea_contig1074.505.1|Name=mRNA_S-dermatodea_contig1074.505.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2166bp|location=Sequence derived from alignment at S-dermatodea_contig1074:17384..20895+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGCGACCTGCATCCTGTCTGCGCCTGGCGCAACGCGTAAATAGCGG
AAGTAACCGGGTGATAGCTGCGTGTTTGGGGGGGGTGCTTGCTGCTCTGG
AGGTAACTTGTGGCGACGCTCTCGTAGTCTGTGCGACGGCGGAAGGGACC
CGAGTATCGGGGCCTGGCCGGGATTGGGATCGGGGAGGCAGTAGTGTTCG
GCAGTTCACGATGGGAGAGCGATCTCCTTGGCAAACGGCACGGAAATTCG
CACCAGGACATTCACCATCGAGCCGCGGTCGCTGTCGACGAGAAACCGGG
ACGATAGTAGCAAGTTGCCTGGACAAGTGCATCGAATATCACGGCGATCT
TTTCGAAGGAGCGACAACAACAACATATTTGTGCGCGATCGAAGGCACCG
GTGGGGGAGAGGGTCAAAGTGTAGTGAACTATTTCGCCTACGGGGCGAAC
ATGAGTCCTTCGGTGCTCACCGCAAAAAGGGGCGTGAAACCTCTCGCATC
TTTGCCGGTAGAAGCTGTGGGCTTTGCTGCTTCGCGAAACAGAGAAAACG
TTCGACTGAGATCACGTCGACTGGAAGAAGAAGACAGGAGTGTGTGTCTG
AGCTTCTGTCACCGGGCAGATGGCGCGACCTGCATCCTGTCTGCGCCTGG
CGCAACGCGTAAATAGCGGAAGTAACCGGGTGATAGCTGCGTGTTTGGGG
GGGGTGCTTGCTGCTCTGGAGGTAACTTGTGGCGACGCTCTCGTAGTCTG
TGCGACGGCGGAAGGGACCCGAGTATCGGGGCCTGGCCGGGATTGGGATC
GGGGAGGCAGTAGTGTTCGGCAGTTCACGATGGGAGAGCGATCTCCTTGG
CAAACGGCACGGAAATTCGCACCAGGACATTCACCATCGAGCCGCGGTCG
CTGTCGACGAGAAACCGGGACGATAGTAGCAAGTTGCCTGGACAAGTGCA
TCGAATATCACGGCGATCTTTTCGAAGGAGCGACAACAACAACATATTTG
TGCGCGATCGAAGGCACCGGTGGGGGAGAGGGTCAAAGTGTAGTGAACTA
TTTCGCCTACGGGGCGAACATGAGTCCTTCGGTGCTCACCGCAAAAAGGG
GCGTGAAACCTCTCGCATCTTTGCCGGTAGAAGCTGTGGGCTTTGCTGCT
TCGCGAAACAGAGAAAACGTTCGACTGAGATCACGTCGACTGGAAGAAGA
AGACAGGAGTGTGTGTCTGAGCTTCTGTCACCGGGCAGGATACGCTACTA
TTGCACGATCACCAGGGCCGCCGCAGGCCTGGGGGATATCACCCGGGGTG
CACGGCGTGCTGCACATTCTTTCACCGTCTGACATGGAGAGGATAGCGGC
CTCCGAGACGGGGTACAAGAGATGCGAGGATACGCTACTATTGCACGATC
ACCAGGGCCGCCGCAGGCCTGGGGGATATCACCCGGGGTGCACGGCGTGC
TGCACATTCTTTCACCGTCTGACATGGAGAGGATAGCGGCCTCCGAGACG
GGGTACAAGAGATGCGAGGTAGAGGTGAAGACACCGGCAGGAACGACACA
TGAAGCGGTTGGCTTCGTTTCGAACCCCACGCAGCTGCTGCCTGCGAGCG
TCCCACCCACTGACAGGTAGAGGTGAAGACACCGGCAGGAACGACACATG
AAGCGGTTGGCTTCGTTTCGAACCCCACGCAGCTGCTGCCTGCGAGCGTC
CCACCCACTGACAGGTACTTGTCGTTGCTTCGCGAAGGAGCAACGTACCA
CGGAGTCAACAAAGACTACCAGTTATGGCTGGCAGGCCTGCCGTCCGTTC
CCTCAAGAGACGCCGAGGCGTACCCAGAGCGAACAAACACGCCGTCCCAG
GCCGCGACAAATATGGTCGTGGCTGTTTCGGTGGTTACCGCCATTGTCGT
GGCGATACTTCGGAGCGGAGTCCTCGGCGAAGGGTTGTGAGTACTTGTCG
TTGCTTCGCGAAGGAGCAACGTACCACGGAGTCAACAAAGACTACCAGTT
ATGGCTGGCAGGCCTGCCGTCCGTTCCCTCAAGAGACGCCGAGGCGTACC
CAGAGCGAACAAACACGCCGTCCCAGGCCGCGACAAATATGGTCGTGGCT
GTTTCGGTGGTTACCGCCATTGTCGTGGCGATACTTCGGAGCGGAGTCCT
CGGCGAAGGGTTGTGA
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