mRNA_S-dermatodea_contig10739.503.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10739.503.1
Unique NamemRNA_S-dermatodea_contig10739.503.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig10739.503.1 vs. uniprot
Match: A0A6H5K3X3_9PHAE (Lactamase_B domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K3X3_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 1.000e-78
Identity = 128/161 (79.50%), Postives = 147/161 (91.30%), Query Frame = 1 
Query:    1 GAAEGLPEEGDVVEEFLTETMMQASDKERCSSGDELFNRESRFETLP-GSPMQLHFLGTASCIPSTSRGVSCTVLRNEGDLWMFDVGEGTQVQIQRSSIKPTKITKIFITHAHGDHSFGLPGMLCLMGQNYERSSGKRVEVYGPTGLRAYLRAALRYTYSK 480
            G AEG+PEEGDVVE FL  TMM+ SD ER +SGD LF+RESRF  LP G+PMQL FLGTASCIPSTSRGVSCTVLRNEGDLW+FDVGEGTQ+QIQ+SS+KPT+ITKIFITHAHGDHSFGLPG+LCLMG N++R+ G+RVE+YGPTGLRAYLRAA+++TYSK
Sbjct:  659 GDAEGMPEEGDVVEAFLASTMMEPSD-EREASGDPLFDRESRFGVLPAGAPMQLTFLGTASCIPSTSRGVSCTVLRNEGDLWLFDVGEGTQIQIQKSSLKPTRITKIFITHAHGDHSFGLPGLLCLMGTNFDRADGRRVEIYGPTGLRAYLRAAVQFTYSK 818
[Close]
BLAST of mRNA_S-dermatodea_contig10739.503.1 vs. uniprot
Match: A0A7S2BLW7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BLW7_9STRA)

HSP 1 Score: 169 bits (428), Expect = 2.520e-50
Identity = 75/133 (56.39%), Postives = 105/133 (78.95%), Query Frame = 1 
Query:   85 RCSSGDELFNRESRFETLPGSPMQLHFLGTASCIPSTSRGVSCTVLRNEGDLWMFDVGEGTQVQIQRSSIKPTKITKIFITHAHGDHSFGLPGMLCLMGQNYERSSGKRVEVYGPTGLRAYLRAALRYTYSKV 483
            R +S D++ NR +    +P S + + F+GTASC+P  +RGVSCT LR  G++W+FD GEGTQ+ IQRS+++P +ITKIF+THAHGDH+FGL G+LCLMGQ+++R+ G+ VE++G  G RAYLRA+ RYT S+V
Sbjct:   16 RTTSPDDIINRTALLPVIPASDIDITFIGTASCVPGLTRGVSCTALRRSGEVWLFDAGEGTQISIQRSTVRPGRITKIFLTHAHGDHTFGLMGILCLMGQDWDRT-GEPVEIFGLQGTRAYLRASARYTISRV 147
[Close]
BLAST of mRNA_S-dermatodea_contig10739.503.1 vs. uniprot
Match: A0A836CJH3_9STRA (Beta-lactamase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJH3_9STRA)

HSP 1 Score: 159 bits (403), Expect = 4.790e-43
Identity = 73/127 (57.48%), Postives = 99/127 (77.95%), Query Frame = 1 
Query:  106 LFNRESRFETLPGSPMQLHFLGTASCIPS-TSRGVSCTVLRNEGDLWMFDVGEGTQVQIQRSSIKPTKITKIFITHAHGDHSFGLPGMLCLMGQNYERSSGKRVEVYGPTGLRAYLRAALRYTYSKV 483
            L +R +R   +P S ++L  LG+ASC+PS TSRGVSCT LR  G++W+FD GEGTQ+QIQRS ++PT+I+KIFITH HGDH  G+PG++CLMGQ+ ER     +E+YGP GLR Y+RA +R +YS++
Sbjct:   84 LVDRWARAARIPASDLELVILGSASCVPSVTSRGVSCTALRLGGEVWLFDAGEGTQIQIQRSQLRPTRISKIFITHLHGDHLNGVPGLMCLMGQDKERDRNAPLELYGPPGLRMYIRAVMRCSYSRI 210
[Close]
BLAST of mRNA_S-dermatodea_contig10739.503.1 vs. uniprot
Match: A0A7S4E198_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4E198_9EUKA)

HSP 1 Score: 149 bits (376), Expect = 3.650e-42
Identity = 70/121 (57.85%), Postives = 94/121 (77.69%), Query Frame = 1 
Query:  130 ETLPGSPMQLHFLGTASCIPSTSRGVSCTVLRNEGDLWMFDVGEGTQVQIQRSS-IKPTKITKIFITHAHGDHSFGLPGMLCLMGQ--NYERSSGKRVEVYGPTGLRAYLRAALRYTYSKV 483
            E +  S + L FLGTASC+PS SR VSCT LR +  +W+FDVGEG+Q+QIQ+S+ I+ +K++KIFITH HGDH FGL G+LCLMG   N ++ + + +E+YGP G RAYLR++LR TYS+V
Sbjct:   80 ENMKPSDLDLEFLGTASCVPSESRCVSCTALRKDSAIWLFDVGEGSQIQIQKSTYIRTSKVSKIFITHLHGDHCFGLAGVLCLMGAQTNQDKKNSQVIEIYGPEGTRAYLRSSLRMTYSRV 200
[Close]
BLAST of mRNA_S-dermatodea_contig10739.503.1 vs. uniprot
Match: UPI0003F07C29 (zinc phosphodiesterase ELAC protein 1-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F07C29)

HSP 1 Score: 148 bits (374), Expect = 1.540e-40
Identity = 72/110 (65.45%), Postives = 87/110 (79.09%), Query Frame = 1 
Query:  151 MQLHFLGTASCIPSTSRGVSCTVLRNEGDLWMFDVGEGTQVQIQRSSIKPTKITKIFITHAHGDHSFGLPGMLCLMGQN-YERSSGKRVEVYGPTGLRAYLRAALRYTYS 477
            M L FLGTASC P  +RGVSCTVLRNEGD WMFD GEG+Q+QIQ+S+I+PT+ITKIFITH HGDH FGLPG LC +GQ+  ER +   +E+YGP GLR Y+R +L  + S
Sbjct:    1 MDLTFLGTASCYPCPNRGVSCTVLRNEGDCWMFDCGEGSQIQIQKSNIRPTRITKIFITHLHGDHLFGLPGFLCTIGQSGAERDTP--LELYGPIGLRRYIRTSLELSRS 108
[Close]
BLAST of mRNA_S-dermatodea_contig10739.503.1 vs. uniprot
Match: A0A482SL08_9ARCH (Ribonuclease Z n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SL08_9ARCH)

HSP 1 Score: 151 bits (381), Expect = 7.270e-40
Identity = 69/132 (52.27%), Postives = 95/132 (71.97%), Query Frame = 1 
Query:  115 RESRFETLPGSPMQLHFLGTASCIPSTSRGVSCTVLRNEGDLWMFDVGEGTQVQIQRSSIKPTKITKIFITHAHGDHSFGLPGMLCLMG---------QNYERSSGKRVEVYGPTGLRAYLRAALRYTYSKV 483
            R++R   L    M+L+FLGTASC+PS SRGVS   LR +GD+WMFD GEGTQVQIQ S ++P +I KIFI+H HGDH FGLPG+LCL+G         Q Y+ +    +++YGP G+R Y+RA+++ +YS++
Sbjct:  201 RDNRLPVLETGEMELYFLGTASCVPSVSRGVSSLTLRYKGDVWMFDCGEGTQVQIQSSKLRPNRINKIFISHLHGDHLFGLPGLLCLLGKSKLALKESQEYDCAELPPIDIYGPEGIRDYIRASMQLSYSRI 332
[Close]
BLAST of mRNA_S-dermatodea_contig10739.503.1 vs. uniprot
Match: A0A1E7EYJ4_9STRA (Metallo-hydrolase/oxidoreductase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EYJ4_9STRA)

HSP 1 Score: 144 bits (362), Expect = 1.960e-39
Identity = 71/116 (61.21%), Postives = 90/116 (77.59%), Query Frame = 1 
Query:  151 MQLHFLGTASCIPSTSRGVSCTVLRNEG----DLWMFDVGEGTQVQIQR-SSIKPTKITKIFITHAHGDHSFGLPGMLCLMGQNYERSSGKRVEVYGPTGLRAYLRAALRYTYSKV 483
            M + F+GTASC PS +RGVSCT LR         W+FD GEGTQ+QIQR SSI+P+KITKIFITHAHGDHSFGLPG+LCLMGQ+   +  + +++YGP GLR +LR A+RY+ S++
Sbjct:    1 MDIIFIGTASCTPSMTRGVSCTALRLHSLPGSGTWLFDCGEGTQLQIQRTSSIRPSKITKIFITHAHGDHSFGLPGLLCLMGQDTAETK-EPIDIYGPEGLRMWLRIAIRYSVSRI 115
[Close]
BLAST of mRNA_S-dermatodea_contig10739.503.1 vs. uniprot
Match: F0XZ84_AURAN (Lactamase_B domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZ84_AURAN)

HSP 1 Score: 144 bits (362), Expect = 8.700e-39
Identity = 66/112 (58.93%), Postives = 88/112 (78.57%), Query Frame = 1 
Query:  151 MQLHFLGTASCIPSTSRGVSCTVLRNEGDLWMFDVGEGTQVQIQRSS-IKPTKITKIFITHAHGDHSFGLPGMLCLMGQNYERSSGKRVEVYGPTGLRAYLRAALRYTYSKV 483
            M++ FLGTASC+PS +RGVSCT LR +G  W+FD GEG+Q+Q+QRS  + P K+  IF+TH HGDHSFGLPG++CL+GQN  +     VEV+GP GLR YLRA+L+ T+++V
Sbjct:    1 MEVTFLGTASCVPSITRGVSCTSLRYDGTTWLFDAGEGSQIQVQRSHLVHPGKVDAIFVTHLHGDHSFGLPGLMCLIGQNRVKGDAP-VEVFGPQGLRLYLRASLKLTHARV 111
[Close]
BLAST of mRNA_S-dermatodea_contig10739.503.1 vs. uniprot
Match: A0A7S0DS69_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DS69_9EUKA)

HSP 1 Score: 148 bits (373), Expect = 1.330e-38
Identity = 72/126 (57.14%), Postives = 91/126 (72.22%), Query Frame = 1 
Query:  115 RESRFETLPGSPMQLHFLGTASCIPSTSRGVSCTVLRNEGDLWMFDVGEGTQVQIQRSS-IKPTKITKIFITHAHGDHSFGLPGMLCLMGQNY--ERSSGKRVEVYGPTGLRAYLRAALRYTYSKV 483
            R      +  S  +L FLGTASCIPS SR VSCT ++  G++W+FD GEG+Q+Q+Q+S  I+ +KITKIFITH HGDH FGL G+LCLMG     E+   + VE++GP GLRAYLR ALR TYS+V
Sbjct:  128 RHDFLRDITASDFELEFLGTASCIPSASRCVSCTAVKKGGEVWIFDAGEGSQIQVQKSQHIRTSKITKIFITHLHGDHCFGLAGILCLMGAQTDDEKKKNQLVEIFGPKGLRAYLRTALRLTYSRV 253
[Close]
BLAST of mRNA_S-dermatodea_contig10739.503.1 vs. uniprot
Match: A0A2B4RIK9_STYPI (Zinc phosphodiesterase ELAC protein 1 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RIK9_STYPI)

HSP 1 Score: 141 bits (356), Expect = 8.280e-38
Identity = 64/109 (58.72%), Postives = 81/109 (74.31%), Query Frame = 1 
Query:  151 MQLHFLGTASCIPSTSRGVSCTVLRNEGDLWMFDVGEGTQVQIQRSSIKPTKITKIFITHAHGDHSFGLPGMLCLMGQNYERSSGKRVEVYGPTGLRAYLRAALRYTYS 477
            M+LHFLGT SC PS  RG SCTVLR+E   WMFD GEGTQ+Q+ +S++KP +I KIFITH HGDH FGLPG+LC +G N   +  + +E+YGP GLR Y+R +L  + S
Sbjct:    1 MELHFLGTGSCYPSPDRGASCTVLRHETGCWMFDCGEGTQIQLMKSTLKPGRINKIFITHLHGDHLFGLPGLLCTIGLNCAENK-QPIEIYGPVGLRKYIRLSLELSQS 108
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10739.503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3X3_9PHAE1.000e-7879.50Lactamase_B domain-containing protein n=2 Tax=Ecto... [more]
A0A7S2BLW7_9STRA2.520e-5056.39Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A836CJH3_9STRA4.790e-4357.48Beta-lactamase-like protein n=1 Tax=Tribonema minu... [more]
A0A7S4E198_9EUKA3.650e-4257.85Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
UPI0003F07C291.540e-4065.45zinc phosphodiesterase ELAC protein 1-like n=1 Tax... [more]
A0A482SL08_9ARCH7.270e-4052.27Ribonuclease Z n=1 Tax=archaeon TaxID=1906665 RepI... [more]
A0A1E7EYJ4_9STRA1.960e-3961.21Metallo-hydrolase/oxidoreductase (Fragment) n=1 Ta... [more]
F0XZ84_AURAN8.700e-3958.93Lactamase_B domain-containing protein (Fragment) n... [more]
A0A7S0DS69_9EUKA1.330e-3857.14Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A2B4RIK9_STYPI8.280e-3858.72Zinc phosphodiesterase ELAC protein 1 n=1 Tax=Styl... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10739contigS-dermatodea_contig10739:4477..7236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score150.2
Seed ortholog evalue8.2e-34
Seed eggNOG ortholog10224.XP_006821571.1
Preferred nameELAC1
KEGG koko:K00784
KEGG Pathwayko03013,map03013
GOsGO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0031123,GO:0034414,GO:0034470,GO:0034641,GO:0034660,GO:0042779,GO:0042780,GO:0042781,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043628,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1905267
EggNOG free text desc.3'-tRNA processing endoribonuclease activity
EggNOG OGs38EKA@33154,3BK5I@33208,3CRJ0@33213,COG1234@1,KOG2121@2759
EC3.1.26.11
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_004335.1
Exons4
Model size485
Cds size483
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10739.503.1prot_S-dermatodea_contig10739.503.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10739 4477..7236 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924171.1475205-CDS-S-dermatodea_contig10739:4476..45921622924171.1475205-CDS-S-dermatodea_contig10739:4476..4592Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10739 4477..4592 +
1694079066.367781-CDS-S-dermatodea_contig10739:4476..45921694079066.367781-CDS-S-dermatodea_contig10739:4476..4592Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10739 4477..4592 +
1622924171.1564255-CDS-S-dermatodea_contig10739:5218..53781622924171.1564255-CDS-S-dermatodea_contig10739:5218..5378Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10739 5219..5378 +
1694079066.381983-CDS-S-dermatodea_contig10739:5218..53781694079066.381983-CDS-S-dermatodea_contig10739:5218..5378Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10739 5219..5378 +
1622924171.165817-CDS-S-dermatodea_contig10739:6091..62471622924171.165817-CDS-S-dermatodea_contig10739:6091..6247Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10739 6092..6247 +
1694079066.4001408-CDS-S-dermatodea_contig10739:6091..62471694079066.4001408-CDS-S-dermatodea_contig10739:6091..6247Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10739 6092..6247 +
1622924171.1809359-CDS-S-dermatodea_contig10739:7185..72361622924171.1809359-CDS-S-dermatodea_contig10739:7185..7236Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10739 7186..7236 +
1694079066.4279706-CDS-S-dermatodea_contig10739:7185..72361694079066.4279706-CDS-S-dermatodea_contig10739:7185..7236Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10739 7186..7236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10739.503.1

>prot_S-dermatodea_contig10739.503.1 ID=prot_S-dermatodea_contig10739.503.1|Name=mRNA_S-dermatodea_contig10739.503.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=161bp
GAAEGLPEEGDVVEEFLTETMMQASDKERCSSGDELFNRESRFETLPGSP
MQLHFLGTASCIPSTSRGVSCTVLRNEGDLWMFDVGEGTQVQIQRSSIKP
TKITKIFITHAHGDHSFGLPGMLCLMGQNYERSSGKRVEVYGPTGLRAYL
RAALRYTYSKV
back to top

mRNA from alignment at S-dermatodea_contig10739:4477..7236+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10739.503.1 ID=mRNA_S-dermatodea_contig10739.503.1|Name=mRNA_S-dermatodea_contig10739.503.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2760bp|location=Sequence derived from alignment at S-dermatodea_contig10739:4477..7236+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGCCGCGGAGGGGCTTCCGGAGGAAGGGGACGTCGTGGAGGAGTTTTT
GACGGAGACGATGATGCAGGCGTCGGACAAGGAGCGCTGTTCTTCTGGCG
ACGAGCTGTTCAACAGGTTTGCGCTTTTTTGAATTTTTGTGTCATTCGTG
TTTCTGCTGCTCGTTTTATGAGGTTGGGATACTAGCTGTTGTGGTAGAGA
GGCACGCCGGTTAGGAGTTTTGGTGGCGGTGCCGGTGGTGGATTTCACCT
ACTCATTTTGTCGCCAGCTTCTTTTTTTCTAAAGAGCCCCGGCTGCGCGA
CTCTTCTCCGCGCGAGCTAAGACAGCCCTCTGCTGTAGATCGTGTTTGTG
TACGTCGAGAAGCTCGTTGATCCTGGACGGGGCAATGCTGCGTCCGCCAT
CTGCCGTGAGTTTGGATGATCATCATAGCCCCCGCTCGGGTGTCGTTTTA
GTGGTTTCGGCCTCTTCGTAAGGCGTTTCATGGCGTGCAAGCAGCCCGGC
CCAGCTCAAGCCCGCGCCTGTGGACTTTGTATCCAACTGTGAAGGCATGT
GCGTGTGACTGCAGAGGCACCTCGTTAGTCTACCTGTGATTTACAGGCAC
CCCCCCCCCGCGCTCTTCTCCCACTCCGTTAGGCATCTACAAGTGGTTTA
CCTGTGAGGGTCAGGGGTACGTCAGACTCAAATACCAATTCGGCATCCTC
CTTTTATTCCCACGCTATTTTCGCTGCTTCTTTCGCGAGCAGGGAGAGCC
GTTTTGAGACATTGCCGGGGAGTCCCATGCAGCTCCACTTTCTCGGAACG
GCCTCTTGTATCCCCTCCACGTCTAGAGGGGTTTCCTGCACCGTGCTAAG
GAACGAGGGGGACCTGTGGATGTTCGACGTCGGCGAAGGGACGCAGGTTC
AGGTGTGGAGGAGGAGTTGTTGTCCTTCCTGACTGCTGTCAGCTTGGCGG
ACGTTTGGGCATGCGAAAGTGCGTGTGTCCTGCGACCCTCTGTGTGTAGT
GTACCTGTCAGGGATAAGCTGGGGCGTAAAGGCATGCCGTGCTACGGGAA
GCGCGTGCTAGAGGTGTGCCCGGTCACAACGATGGTCATGGTAGACCTGT
CCTCTGCGGCTTCGTCAACAGCAGTATTGAGCTGTTGTGTTATCTTGCGT
TGTGTATAGCGCATGTGCCAGCGCACCCGTATTTTTCGCCCCCCACCCTC
TACAAGTAAGATGAAATTAGTTCGGTCTAGGCCGAACACTCTTAGCAGGA
TGCAGCTCACCCTTCATGCGNNNNNNNNNNCCCGTCCCGGCTTTGTAGGG
ATGCGAGGTCTATGGTCTAACGACTACGGCATGCACGATCAATGAGTACA
CCCTCTCCGAGTAACCCCCGCCCCTGCCCCCTTGTTGCGGAGATTGCGCT
CCTCGTCGCGGATGCGTTGTTTTAGTTTCGTTGCACGGGTTCGCCACTCG
GCCGGCCTCCCTAACAGTAAGGCGTGTATTTCCAGCGTAAACTCCCCACG
GGTCACTTCTCGTGTGATGTCGACCTTTGTTTTTCTCGTCATCACCGCCT
CCGCCGGTGCTGTCGTCGCCCATTCTTCCACGTCCGTCGTCTCTCGCCCA
TCCCCGCACGAGCAGATCCAGAGGAGCTCTATCAAGCCGACAAAGATCAC
GAAGATTTTCATCACCCACGCGCACGGAGACCACAGCTTCGGCCTGCCCG
GCATGCTGTGCCTCATGGGGCAGAACTACGAGCGGTCCTCCGGCAAGCGC
GTCGAGGTCTACGGCCCGACTGTGAGCGGACAGGGGGTCGAGAGAGAAAA
CGCTCTTTTTTTTTGTTTTTTTTTCAAGAGCGGGTCGTGGGCCAGGCAGG
GAGTGGGTCAAGGGGCGAGGTTTGAAGACAATTCACCAGCGTGACAGATG
TAGAATGCCGTTTGATAGTTCGCTGACCCCGCCGGGGCCCTTTGTGGGAG
GGTGGTATGTCTTTCCGTCGTCTTTTAGGATGTTGCTGTTCGGCCAGTCG
CGCAGTTGTGTGTGTGTATGTTTTCTCCAGGGATTGGGAGTGTGCCTGTG
CTCGGACAGCTCCACCACTCGTTCGGCTTCTTGAAGGTCTCTGCATGCGT
GAGTTTCATTGATGTGGATGGCCGATAGGAAGCACCCAAGGATGTCGATT
TTTTCCTCGCTGCCGCTGCTGGGCTACGTTTGCTGTAGAAGTACACCAAA
CCGAAGGAGTAAGGTGTGGTCACACCCCCCAAGCCCCCCTCCCCTTAGAA
CATACGAGTTTCGAGATGAGCGTTCTCATTTGGGCCTTTTTCAGGCTGTG
TCGAATTATTCCACCCATGGCTCGAGTGCCTCGAGGAGAAGAATCGGACA
GTACCTTTGCTACGTTAACTATTTCGTAGTTCAGTACATGTAACCGGCGC
CGTGCGCACAGGATAAATACCATATAACTCATGGACACAAAGGTGAGCCG
GAAAACAGACACAAGGCAGGCTTTTCTCGTGGAACCCTATGCATGCTACC
GCCGTACAGATGCGGAAGTCGTATTATGCAGTCGGCGACGCCGATGAAAT
TTCGGCGTGCCGAGATGCCGCACGCAATTTCGTGCACACGGTTGGCGCTG
GCCTTCCCCCGTCCCATCTCGACCGTCCCGACAGTTGCAACCCAGCCTCG
TCCTGGCACTCTCTCACTGCCCCCCGCCCCCACCGCTGCCCGCGGCTACG
TGCGTGCAGGGGCTGCGCGCCTACCTTCGTGCCGCGCTGCGCTACACCTA
CTCGAAGGTG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10739:4477..7236+

>mRNA_S-dermatodea_contig10739.503.1 ID=mRNA_S-dermatodea_contig10739.503.1|Name=mRNA_S-dermatodea_contig10739.503.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=966bp|location=Sequence derived from alignment at S-dermatodea_contig10739:4477..7236+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGCCGCGGAGGGGCTTCCGGAGGAAGGGGACGTCGTGGAGGAGTTTTT
GACGGAGACGATGATGCAGGCGTCGGACAAGGAGCGCTGTTCTTCTGGCG
ACGAGCTGTTCAACAGGGCGCCGCGGAGGGGCTTCCGGAGGAAGGGGACG
TCGTGGAGGAGTTTTTGACGGAGACGATGATGCAGGCGTCGGACAAGGAG
CGCTGTTCTTCTGGCGACGAGCTGTTCAACAGGGAGAGCCGTTTTGAGAC
ATTGCCGGGGAGTCCCATGCAGCTCCACTTTCTCGGAACGGCCTCTTGTA
TCCCCTCCACGTCTAGAGGGGTTTCCTGCACCGTGCTAAGGAACGAGGGG
GACCTGTGGATGTTCGACGTCGGCGAAGGGACGCAGGTTCAGGGAGAGCC
GTTTTGAGACATTGCCGGGGAGTCCCATGCAGCTCCACTTTCTCGGAACG
GCCTCTTGTATCCCCTCCACGTCTAGAGGGGTTTCCTGCACCGTGCTAAG
GAACGAGGGGGACCTGTGGATGTTCGACGTCGGCGAAGGGACGCAGGTTC
AGATCCAGAGGAGCTCTATCAAGCCGACAAAGATCACGAAGATTTTCATC
ACCCACGCGCACGGAGACCACAGCTTCGGCCTGCCCGGCATGCTGTGCCT
CATGGGGCAGAACTACGAGCGGTCCTCCGGCAAGCGCGTCGAGGTCTACG
GCCCGACTATCCAGAGGAGCTCTATCAAGCCGACAAAGATCACGAAGATT
TTCATCACCCACGCGCACGGAGACCACAGCTTCGGCCTGCCCGGCATGCT
GTGCCTCATGGGGCAGAACTACGAGCGGTCCTCCGGCAAGCGCGTCGAGG
TCTACGGCCCGACTGGGCTGCGCGCCTACCTTCGTGCCGCGCTGCGCTAC
ACCTACTCGAAGGTGGGGCTGCGCGCCTACCTTCGTGCCGCGCTGCGCTA
CACCTACTCGAAGGTG
back to top