mRNA_S-dermatodea_contig10726.496.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10726.496.1
Unique NamemRNA_S-dermatodea_contig10726.496.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10726.496.1 vs. uniprot
Match: D7G3T0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3T0_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 7.030e-20
Identity = 57/113 (50.44%), Postives = 74/113 (65.49%), Query Frame = 1 
Query:   34 NSRNLQSSTQVTVMMLYTKSARESLGVLSDSQMQTHLAEALAGTNQGMANSDINLEMPIVHVGPFPDNVASSSSLDDLYTLPDAEDVGRLRDMYAADLVQVIGGPYIEGCGRG 372
            +SR LQSSTQV +M+LY+  A  SLG L   QM+T +AEA   TNQ M NSDI LE+ +VHV   P +   S++LD L  L  +E+V  LRD ++ADLVQ+IG  +   CG G
Sbjct:   82 SSRGLQSSTQVAMMVLYSPEAMSSLGGLESQQMETTIAEAFVQTNQAMHNSDIPLEIVLVHVAQLPYS-QESAALDILTGLTRSEEVESLRDAHSADLVQLIG-DFTGSCGAG 192
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BLAST of mRNA_S-dermatodea_contig10726.496.1 vs. uniprot
Match: A0A521WJ12_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A521WJ12_9GAMM)

HSP 1 Score: 63.9 bits (154), Expect = 6.290e-9
Identity = 52/159 (32.70%), Postives = 83/159 (52.20%), Query Frame = 1 
Query:   19 EATGTNSRNLQSSTQVTVMMLYTKSARESLGVLSDSQMQTHLAEALAGTNQGMANSDINLEMPIVHVGP--FPDNVASSSSLDDLYTLPDAE--DVGRLRDMYAADLVQVIG--GPYIEGCGRGYLFT----GDASSGFSITGANCITGFTHTHEFGHN 465
            EATGT + +    T   +++LY+ ++R      S   +++ +  A+A  NQ  ANS + L + +VH+    + +      +L  L    D +  +   LRD++ ADLV ++   G Y   CG  Y+ T    G ASS FS+T +NC++G T  HE GHN
Sbjct:  165 EATGTAAGD---GTVQDILVLYSPASRTRYQ--SSGGVESRILSAIAAANQAYANSGLALSLNLVHMAETQYVETGDMGQALSALRQNGDGQMDEAHALRDLHGADLVALVNEDGNY---CGIAYVMTSVSTGFASSAFSVTASNCLSGQTLAHEVGHN 315
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BLAST of mRNA_S-dermatodea_contig10726.496.1 vs. uniprot
Match: UPI0013D220A3 (carbohydrate binding domain-containing protein n=1 Tax=Spartinivicinus ruber TaxID=2683272 RepID=UPI0013D220A3)

HSP 1 Score: 59.7 bits (143), Expect = 1.840e-7
Identity = 42/146 (28.77%), Postives = 67/146 (45.89%), Query Frame = 1 
Query:   58 TQVTVMMLYTKSARESLGVLSDSQMQTHLAEALAGTNQGMANSDINLEMPIVHVGPFPDNVASSSSLDDLYTLPDAEDVGRLRDMYAADLVQVIGGPYIEGCGRGYLFTGDASSG----------FSITGANCITGFTHTHEFGHN 465
            T V VM+LYT  A   +       +  H+   +   NQ   NSD+N+++ +VH     ++  S S    L    D + +  LR  Y ADLV +I     + CG  ++  GD+++G          +S+ GA C     + H+ GHN
Sbjct:   28 TTVDVMLLYTPGAASKV-----KDINAHITNLVEYANQSYLNSDVNMQLNVVHTEAIANDYGSVSGAT-LKKFTDDQKIAGLRKQYGADLVTLITLRKADICGSAWVPQGDSTTGKFKSTASGFAYSVIGAECGL-LAYVHQLGHN 166
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BLAST of mRNA_S-dermatodea_contig10726.496.1 vs. uniprot
Match: UPI00135B5B8B (M12 family metallo-peptidase n=1 Tax=Methylicorpusculum oleiharenae TaxID=1338687 RepID=UPI00135B5B8B)

HSP 1 Score: 58.9 bits (141), Expect = 3.540e-7
Identity = 46/152 (30.26%), Postives = 77/152 (50.66%), Query Frame = 1 
Query:   46 LQSSTQVTVMMLYTKSARESLGVLSDSQMQTHLAEALAGTNQGMANSDINLEMPIVHVGP--FPDNVASSSSLDDLYTLPDA--EDVGRLRDMYAADLVQVIGGPYIEGCGRGYLF----TGDASSGFSITGAN----CITGFTHTHEFGHN 465
            + + T + VM++YT  +R  +     S ++  +  A+A  NQ   NS I++++ +VH+    + ++ ++S+SL D+    D   + V  LR+ Y AD V +I       CG GYL     T  AS  FS+   +    C++  T  HE GHN
Sbjct:  228 INAGTVIDVMVVYTPQSR--INAYGQSGIEAKIVNAVAKANQSYINSQIDMQINLVHMAEVSYVESGSTSTSLSDITGTSDGKMDAVHTLRNQYGADQVVLITTD-TSACGTGYLMSSPSTSFASYAFSVVHDDSKYACLSNHTLAHELGHN 376
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BLAST of mRNA_S-dermatodea_contig10726.496.1 vs. uniprot
Match: A0A661XI51_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A661XI51_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 2.140e-6
Identity = 41/127 (32.28%), Postives = 67/127 (52.76%), Query Frame = 1 
Query:  130 MQTHLAEALAGTNQGMANSDINLEMPIVHVGPFPDNVASSS--SLDDLYTLPDA--EDVGRLRDMYAADLVQVI-GGPYIEG---------CGRGYLFT-GDASSGFSITGANCITG-FTHTHEFGH 462
            M  H++ A+  +NQG ANSD+++ M + ++    DN  +++   +DDL    D   +D+  +R+ Y  D+V +I GG Y            CG  + F   D ++ F ++  +C TG FT  HEFGH
Sbjct:  232 MIEHISLAITESNQGYANSDVDMRMEMAYMYEVDDNETNNACNDVDDLQDTNDGKWDDIHSVRNFYDGDMVCLITGGLYAANEDCNPNGGLCGIAFAFDYTDDTNMFQLSEYDCATGNFTFAHEFGH 358
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BLAST of mRNA_S-dermatodea_contig10726.496.1 vs. uniprot
Match: A0A285ISJ5_9GAMM (Metallo-peptidase family M12B Reprolysin-like n=1 Tax=Rheinheimera tuosuensis TaxID=1323745 RepID=A0A285ISJ5_9GAMM)

HSP 1 Score: 55.5 bits (132), Expect = 5.750e-6
Identity = 52/156 (33.33%), Postives = 73/156 (46.79%), Query Frame = 1 
Query:   64 VTVMMLYTKSARESLGVLSDSQMQTHLAEALAGTNQGMANSDINLEMPIVHVGPFPDNVASSS--SLDDLYTLPDAE----------DVGRLRDMYAADLVQVIGGPYIEG---CGRGYLFTGDASSGFSIT------GANCITGFTHTHEFGHNF 468
            V +MMLY +   E      D    T + + +A  NQ  A+SDIN+++ +VH   F D    S+  +LDDL T  +A           +V  LR+ Y AD+V +I    I     CG       D+    +I+      G+NCI   T THE GHNF
Sbjct:  197 VDIMMLYARDVAEQY---PDGLADTLMNQLVAKANQSFADSDINMQLRLVH-RQFVDYSQPSNFTALDDLRTALNANSTLPGNNSLSNVAALREQYGADIVSMIRVHDINERRVCGVALFPQSDSDIVINISNVGISGGSNCIN--TFTHEIGHNF 346
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BLAST of mRNA_S-dermatodea_contig10726.496.1 vs. uniprot
Match: A0A352AMS0_9CYAN (Uncharacterized protein n=1 Tax=Cyanobacteria bacterium UBA9273 TaxID=2055791 RepID=A0A352AMS0_9CYAN)

HSP 1 Score: 54.3 bits (129), Expect = 1.390e-5
Identity = 48/142 (33.80%), Postives = 70/142 (49.30%), Query Frame = 1 
Query:   70 VMMLYTKSARESLGVLSDSQMQTHLAEALAGTNQGMANSDINLEMPIVHVGPFPDNVASSSSLDDLYTLPDAED-----VGRLRDMYAADLVQVIGGPYIEGCGRGYLFTGDASS----GFSITGANCITGF-THTHEFGHN 465
            VM++YT +AR + G          LAE    TNQG ANS INL++ IVH     + + S SS  DL  L + +D     +  LR +Y  D V +    +++ CG   L    + +     FS+   +C TG+ +  HE GHN
Sbjct:  246 VMVVYTSAARRAAGGTVAMNSLIDLAEM--ETNQGFANSHINLQIRIVHRQEV-NYLESGSSSTDLKRLINPKDGFLDSLQSLRQLYKVDAVSLWVN-HLDSCGLSRLMKSASMAFRDRAFSVVRDDCATGYYSFAHELGHN 383
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10726.496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G3T0_ECTSI7.030e-2050.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A521WJ12_9GAMM6.290e-932.70Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
UPI0013D220A31.840e-728.77carbohydrate binding domain-containing protein n=1... [more]
UPI00135B5B8B3.540e-730.26M12 family metallo-peptidase n=1 Tax=Methylicorpus... [more]
A0A661XI51_9BACT2.140e-632.28Uncharacterized protein n=1 Tax=Bacteroidetes bact... [more]
A0A285ISJ5_9GAMM5.750e-633.33Metallo-peptidase family M12B Reprolysin-like n=1 ... [more]
A0A352AMS0_9CYAN1.390e-533.80Uncharacterized protein n=1 Tax=Cyanobacteria bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10726contigS-dermatodea_contig10726:3164..5464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue2e-16
Seed eggNOG ortholog2880.D8LC56
EggNOG free text desc.Metallo-peptidase family M12B Reprolysin-like
EggNOG OGs2E79G@1,2SDWE@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size474
Cds size474
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10726.496.1prot_S-dermatodea_contig10726.496.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10726 3164..5464 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924170.5699832-CDS-S-dermatodea_contig10726:3163..32261622924170.5699832-CDS-S-dermatodea_contig10726:3163..3226Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10726 3164..3226 +
1694079065.9409447-CDS-S-dermatodea_contig10726:3163..32261694079065.9409447-CDS-S-dermatodea_contig10726:3163..3226Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10726 3164..3226 +
1622924170.5785594-CDS-S-dermatodea_contig10726:4029..41911622924170.5785594-CDS-S-dermatodea_contig10726:4029..4191Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10726 4030..4191 +
1694079065.9602659-CDS-S-dermatodea_contig10726:4029..41911694079065.9602659-CDS-S-dermatodea_contig10726:4029..4191Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10726 4030..4191 +
1622924170.5866675-CDS-S-dermatodea_contig10726:4666..48121622924170.5866675-CDS-S-dermatodea_contig10726:4666..4812Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10726 4667..4812 +
1694079065.972174-CDS-S-dermatodea_contig10726:4666..48121694079065.972174-CDS-S-dermatodea_contig10726:4666..4812Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10726 4667..4812 +
1622924170.5968277-CDS-S-dermatodea_contig10726:5361..54641622924170.5968277-CDS-S-dermatodea_contig10726:5361..5464Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10726 5362..5464 +
1694079065.9804795-CDS-S-dermatodea_contig10726:5361..54641694079065.9804795-CDS-S-dermatodea_contig10726:5361..5464Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10726 5362..5464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10726.496.1

>prot_S-dermatodea_contig10726.496.1 ID=prot_S-dermatodea_contig10726.496.1|Name=mRNA_S-dermatodea_contig10726.496.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=158bp
SSTLGAEATGTNSRNLQSSTQVTVMMLYTKSARESLGVLSDSQMQTHLAE
ALAGTNQGMANSDINLEMPIVHVGPFPDNVASSSSLDDLYTLPDAEDVGR
LRDMYAADLVQVIGGPYIEGCGRGYLFTGDASSGFSITGANCITGFTHTH
EFGHNFE*
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mRNA from alignment at S-dermatodea_contig10726:3164..5464+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10726.496.1 ID=mRNA_S-dermatodea_contig10726.496.1|Name=mRNA_S-dermatodea_contig10726.496.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2301bp|location=Sequence derived from alignment at S-dermatodea_contig10726:3164..5464+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGTCTACCCTTGGAGCGGAGGCCACCGGTACGAACAGTCGTAACCTGCA
GTCTTCCACGCAGGTGTGTGCTCATGTGTCATGTGTGTGGGTGTGCTTGT
TTGCTGGATCTTCCCGCCACCTGAGGAACTGCGGTGATACCGTGAGCGTG
GTTGGCCTCTTGCTTCATGACGGCATTCGTTCATGATGGTATGGACGTGT
GCATGTGCTGCGCGCACCGTGCCAGTCGGCATTGAGTGCTCGAGCCAACC
ACGGGGGTCAACTGGTTCCTTATTAATGGCGTGATAGGCCTTTTACACCC
TCCGCAGCCTGCGCCACTTGCTCAGCCGCAAAATATATCGATCTCGATGA
AACTCGGACACGGGCGTTATGAAATTCAATGCAGCCCGTGATTTTTGTGA
GCCGGGGGGCTTCTGAGTCGGGGATTGGTGAGGACTTGCTACCCCTTGGT
GGGTCTCCATGCGCATTCCGACATCTGAGAACAGCGCCTGTTCTGGCATC
ACGAGTCCGCTTTGGGAGGTTCGACTCGTGTTTCTTTATCGCAACTCGCG
GGGAAACATCACTTCAACGCTAGCGTCGAAGACGATGGTACCATTAGTGT
CTCGAAGGTGACCTCGGGTACCCCCCTCCCCCCTTCCCCGCCCCACCCCA
CCCTAGCCACCCCCCCTCGCACGCTCTTGCAACACAACTCCAAGGGTCTT
GCTTTGTTTGTTTACGGAACATTTTGGCGACACAACGTATTCCGTAGGAA
CTGGCTTGTAAAAGATGCACTGAAACACAGGGCATGGATGGGATCATTGA
TATCTCGAACGAAGAGGACTGATGCCCTTTACGCCTCGCTCCTGTCTCCC
GACCCGTACTCGCTAGGTCACAGTGATGATGCTGTACACCAAGAGCGCGC
GGGAAAGTCTTGGAGTCCTCAGCGACTCCCAGATGCAGACGCACCTGGCG
GAGGCCCTAGCAGGGACGAACCAAGGCATGGCGAACTCGGACATCAACCT
GGAAATGCCTATCGTGCACGTCGGGCCGGTGAGCCGATCTCCCGGCCAAG
AGGGAGGATTGCGTGAAACGGGTACACCGCACAAAGTGGGAAAAATGAAT
CCGGTGGTATTCCCGACTTCCGCTCGTTCAGCAAAATGTACCAGCACGGC
GTTCGTGCCAGGTGTAAGTTACGCATGCCACACGAGTCACACCGGCCGCA
TACCAGACGCGCCCGTGAAGGCCAACCAAGCCTCGATAATTCTGAAACCC
TACTCTATATCGGGGAATGCTGACGGCAATGATGAGCACATGGGCACACC
ACGTCAAACCTCACGATTTTAACTCTGTCACCAGTACTTGAACTTTTCCG
GAAGCCAGTGGCGGTATCCCTCCCCCCCCCCTCCCGCTTTCGGTGGTGTT
GCTTGTTGCTCCTGCCATACGTGATGTACAAAACAAAATTTCCCCCGTTC
CTCTCTTCCGCCGATACGCCTACTCGTACGCCTTGTTCGTCAAATTTCGC
CAGTTTCCGGATAACGTGGCGAGCAGCTCCTCCCTCGATGATCTCTACAC
TCTTCCAGACGCCGAGGACGTCGGGAGACTCCGTGATATGTACGCGGCGG
ACCTCGTGCAAGTCATCGGGGGTCCCTACATCGAGGGCTGCGGTCGTGGG
TGAGTTGTGGGGCTCCCAGGGCGTGCGTTAGAGAGTACGCGACGGCGGAT
TTATCCGTCTAGGTGCTGTCCTGGCTGGAACCATATGGGCCTGTTAGATT
CAATTCACCAGTGGAAGGCTGAGCAACAGGGGAATCAGAGCTTCGTATTA
GTGCCCCGGTGGCTCGCCCGAGGCTACTGCTAATATAGTTGACGTAGGCA
TCCCGAAACGTGGAGTTCATGCCAACAACATACCTGGGTAGTATGCCTGC
GCCAAAGGGGCTTGACGCGACGCAGCACATTATATTCCTTTGCCGTTTGT
TGCATCGACCGGCAAATCGATCGCGATCGTGGCGTGTCTTGGAAATGTGT
GCAATGATATTTGGAGGGCGAACCAGTGAGTCTACGACACTGCATCTGTT
CAAATGCCCATTGATTGCAATCACGGAGTAGGGAATGGACCGATGGATGC
ATGCACAGCTATTTTGGTACGGAACAAGGGACGTCGTTGGTGTAATCAAA
AGCGTCTATGGTATAATGTTCGTAGCACCCTGTCATTTTTATCTGCAGGT
ACCTATTCACGGGCGACGCGTCCTCCGGCTTCAGCATCACGGGAGCGAAC
TGCATAACTGGCTTTACGCACACTCACGAGTTTGGCCACAACTTCGAGTA
A
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Coding sequence (CDS) from alignment at S-dermatodea_contig10726:3164..5464+

>mRNA_S-dermatodea_contig10726.496.1 ID=mRNA_S-dermatodea_contig10726.496.1|Name=mRNA_S-dermatodea_contig10726.496.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at S-dermatodea_contig10726:3164..5464+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGTCTACCCTTGGAGCGGAGGCCACCGGTACGAACAGTCGTAACCTGCA
GTCTTCCACGCAGTCGTCTACCCTTGGAGCGGAGGCCACCGGTACGAACA
GTCGTAACCTGCAGTCTTCCACGCAGGTCACAGTGATGATGCTGTACACC
AAGAGCGCGCGGGAAAGTCTTGGAGTCCTCAGCGACTCCCAGATGCAGAC
GCACCTGGCGGAGGCCCTAGCAGGGACGAACCAAGGCATGGCGAACTCGG
ACATCAACCTGGAAATGCCTATCGTGCACGTCGGGCCGGTCACAGTGATG
ATGCTGTACACCAAGAGCGCGCGGGAAAGTCTTGGAGTCCTCAGCGACTC
CCAGATGCAGACGCACCTGGCGGAGGCCCTAGCAGGGACGAACCAAGGCA
TGGCGAACTCGGACATCAACCTGGAAATGCCTATCGTGCACGTCGGGCCG
TTTCCGGATAACGTGGCGAGCAGCTCCTCCCTCGATGATCTCTACACTCT
TCCAGACGCCGAGGACGTCGGGAGACTCCGTGATATGTACGCGGCGGACC
TCGTGCAAGTCATCGGGGGTCCCTACATCGAGGGCTGCGGTCGTGGTTTC
CGGATAACGTGGCGAGCAGCTCCTCCCTCGATGATCTCTACACTCTTCCA
GACGCCGAGGACGTCGGGAGACTCCGTGATATGTACGCGGCGGACCTCGT
GCAAGTCATCGGGGGTCCCTACATCGAGGGCTGCGGTCGTGGGTACCTAT
TCACGGGCGACGCGTCCTCCGGCTTCAGCATCACGGGAGCGAACTGCATA
ACTGGCTTTACGCACACTCACGAGTTTGGCCACAACTTCGAGTAAGTACC
TATTCACGGGCGACGCGTCCTCCGGCTTCAGCATCACGGGAGCGAACTGC
ATAACTGGCTTTACGCACACTCACGAGTTTGGCCACAACTTCGAGTAA
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