mRNA_S-dermatodea_contig10715.494.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10715.494.1
Unique NamemRNA_S-dermatodea_contig10715.494.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10715.494.1 vs. uniprot
Match: D7FY79_ECTSI (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY79_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 2.740e-27
Identity = 52/75 (69.33%), Postives = 67/75 (89.33%), Query Frame = 1 
Query:    1 GKGFLKELIIRKNPALLETFAGFGSNPNFLQDLHQLMDCETRRLYDDLFADYSLSEGKTLSKAERKRRGLMDDKA 225
            GKGFLK+LI+R++  LL+TFAGFGSNPNFL+DLH L+D E++RLY+ LF   SL+EGK+LSKAER+R+GLMDD+A
Sbjct:   10 GKGFLKDLILRRDEGLLKTFAGFGSNPNFLEDLHGLIDHESKRLYESLFVGLSLAEGKSLSKAERRRKGLMDDRA 84
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BLAST of mRNA_S-dermatodea_contig10715.494.1 vs. uniprot
Match: A0A6H5K9P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9P8_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.030e-25
Identity = 50/75 (66.67%), Postives = 66/75 (88.00%), Query Frame = 1 
Query:    1 GKGFLKELIIRKNPALLETFAGFGSNPNFLQDLHQLMDCETRRLYDDLFADYSLSEGKTLSKAERKRRGLMDDKA 225
            GKGFLK+LI+R++  L+ TFAGFGSNPNFL+DLH L+D E++RLY+ LF   SL+EGK+LSKAER+R+GLMD++A
Sbjct:   26 GKGFLKDLILRRDEDLITTFAGFGSNPNFLEDLHSLIDRESKRLYESLFVGLSLAEGKSLSKAERRRKGLMDNRA 100
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BLAST of mRNA_S-dermatodea_contig10715.494.1 vs. uniprot
Match: A0A7S4DAD9_HETAK (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAD9_HETAK)

HSP 1 Score: 69.3 bits (168), Expect = 4.530e-12
Identity = 37/79 (46.84%), Postives = 53/79 (67.09%), Query Frame = 1 
Query:    1 GKGFLKELIIRKNPALLETFAGFGS----NPNFLQDLHQLMDCETRRLYDDLFADYSLSEGKTLSKAERKRRGLMDDKA 225
            GK FLKEL++R++P L++    F S    +  FL  +HQL+D E+  LY  LF D SL  GKTLSK+ER+++ L D+K+
Sbjct:   43 GKAFLKELVLRRDPRLVQLLRTFESKETGDAEFLDGIHQLIDEESYELYSRLFDDCSLEVGKTLSKSEREQKKLSDEKS 121
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BLAST of mRNA_S-dermatodea_contig10715.494.1 vs. uniprot
Match: A0A7S2HTB0_9STRA (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HTB0_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 6.310e-10
Identity = 29/79 (36.71%), Postives = 53/79 (67.09%), Query Frame = 1 
Query:    1 GKGFLKELIIRKNPALLETFAGF----GSNPNFLQDLHQLMDCETRRLYDDLFADYSLSEGKTLSKAERKRRGLMDDKA 225
            GK F+KELI+R++P L++    F    G +  FL  ++ +++ E+++ +D L+A+ +L  GK+LSK+ER+ + L D K+
Sbjct:   53 GKAFMKELILRRDPRLIDVLRDFDAQEGKDSTFLDSINSMIEEESKKYFDGLYAECTLERGKSLSKSEREAKNLNDQKS 131
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BLAST of mRNA_S-dermatodea_contig10715.494.1 vs. uniprot
Match: A0A024TKD1_9STRA (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TKD1_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 6.100e-8
Identity = 28/78 (35.90%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:    1 GKGFLKELIIRKN---PALLETFAGFGSNPNFLQDLHQLMDCETRRLYDDLFADYSLSEGKTLSKAERKRRGLMDDKA 225
            GK  LKE++ +++   P L++T     S+ ++L+ +H+L+D ET +L+D L+ DY L +GK +S+ ER+  G++  K+
Sbjct:   39 GKALLKEVVFQQDVRGPKLVDTLFS-SSDEHWLKFVHRLLDVETLKLFDSLYLDYPLEQGKAISRQEREDNGMLTQKS 115
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BLAST of mRNA_S-dermatodea_contig10715.494.1 vs. uniprot
Match: A0A7S1TW39_9STRA (Histone-lysine N-methyltransferase, H3 lysine-79 specific (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TW39_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.740e-7
Identity = 31/70 (44.29%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:    1 GKGFLKELIIRKNPALLETFAGFGSNPN-----FLQDLHQLMDCETRRLYDDLFADYSLSEGKTLSKAER 195
            GKGFLKELI+R++  +      F S+ N      + +L +L+D E   LY +LF D +L +GKTLSK ER
Sbjct:   28 GKGFLKELILRRDARIDRAMEMFESSSNSEEGSVIDELTKLIDTEAHALYTELFQDCTLEDGKTLSKKER 97
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BLAST of mRNA_S-dermatodea_contig10715.494.1 vs. uniprot
Match: A0A7R9U3G4_9STRA (Histone-lysine N-methyltransferase, H3 lysine-79 specific (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3G4_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.400e-6
Identity = 30/80 (37.50%), Postives = 48/80 (60.00%), Query Frame = 1 
Query:    1 GKGFLKELIIRKNPALLETFAGFGSNPN-----FLQDLHQLMDCETRRLYDDLFADYSLSEGKTLSKAERKRRGLMDDKA 225
            GKGFLKELI+R++  +    A F    +      + +L +L+D E   LY +LF + +L +GK+LSK ER+   L ++K+
Sbjct:   52 GKGFLKELILRRDERIDAVMALFDQQSSEGEGSVIDELTKLIDTEAHVLYTELFKNCTLEDGKSLSKREREEGDLKEEKS 131
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10715.494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FY79_ECTSI2.740e-2769.33Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A6H5K9P8_9PHAE1.030e-2566.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4DAD9_HETAK4.530e-1246.84Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A7S2HTB0_9STRA6.310e-1036.71Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A024TKD1_9STRA6.100e-835.90Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A7S1TW39_9STRA1.740e-744.29Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A7R9U3G4_9STRA2.400e-637.50Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10715contigS-dermatodea_contig10715:2040..3398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.6
Seed ortholog evalue4e-23
Seed eggNOG ortholog2880.D7FY79
EggNOG free text desc.Histone methylation protein DOT1
EggNOG OGs2BR00@1,2S1KF@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924170.4222822-CDS-S-dermatodea_contig10715:2039..21511622924170.4222822-CDS-S-dermatodea_contig10715:2039..2151Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10715 2040..2151 +
1694079065.840932-CDS-S-dermatodea_contig10715:2039..21511694079065.840932-CDS-S-dermatodea_contig10715:2039..2151Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10715 2040..2151 +
1622924170.4334702-CDS-S-dermatodea_contig10715:3285..33981622924170.4334702-CDS-S-dermatodea_contig10715:3285..3398Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10715 3286..3398 +
1694079065.852872-CDS-S-dermatodea_contig10715:3285..33981694079065.852872-CDS-S-dermatodea_contig10715:3285..3398Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10715 3286..3398 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10715.494.1prot_S-dermatodea_contig10715.494.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10715 2040..3398 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10715.494.1

>prot_S-dermatodea_contig10715.494.1 ID=prot_S-dermatodea_contig10715.494.1|Name=mRNA_S-dermatodea_contig10715.494.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=75bp
GKGFLKELIIRKNPALLETFAGFGSNPNFLQDLHQLMDCETRRLYDDLFA
DYSLSEGKTLSKAERKRRGLMDDKA
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mRNA from alignment at S-dermatodea_contig10715:2040..3398+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10715.494.1 ID=mRNA_S-dermatodea_contig10715.494.1|Name=mRNA_S-dermatodea_contig10715.494.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1359bp|location=Sequence derived from alignment at S-dermatodea_contig10715:2040..3398+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCAAGGGGTTCTTGAAGGAGCTCATCATAAGGAAGAACCCAGCCTTGCT
CGAGACCTTCGCCGGCTTTGGAAGCAACCCTAACTTCCTCCAAGACCTAC
ACCAGCTCATGGGTGAGAGATGAGAGAGTCAGAGGCCCTTCCTCCGAGAC
TAGTATTAATATTAATAATACATGTAGCGGAGGTACCGTAGACGGCAATC
GGGATCAGGACCAGGACCAGGACCAGGACCAGGACCGAGCTAATGAGCCA
AGTGGTACACCCAACATAGCGTGCCAGAAATTGATAAGATAGAAGTACAA
GTGTGGTGTGGCTGGCCTTTCGGCGTCTGCAATGTTTCCGGCTGAAAGGT
CAAATCATTTGATTTCATTATTTTAGTTTATTCTAACGAGCCCGACGTGT
AACTACATAATTTGAATACCCTGTTGTTTGAGAAGATATAAAATGCGATA
GTGTAAGTATTGCGGAAATTGCACAGCAGTCGTTCAGGACCAAGGCCCTC
ATTGCTATTAGTAACTGGTTACTATTAATTACTGAATGTTGGTAACTGAT
TACTATTGATAACTTATTACTAGTATTAGCTTATTACTGTGAGTAACTGA
TTGCTATTGGTAACTAATTCCTATGATTTCCTGATTTGTATTAACTTATT
ACATTAATAGCTTATTTACTGTGACTGAATGCTAGTAGTAACTGATTGCT
ATGATTTCCTGATTTTTATTAGTAGCTGATATACATTAATAACTGTGTAC
CTCCGCAATGGTATTACTTGTACGGAAAATTACACAGAGTAGTTTTCAGG
AACAAAACCTCTGCCGATTACCATACAATAGCGTATTCTCAAGTTTTTTT
TGTTTTAATCGTTGGCCCGAACACCTAGTGCCTCCTCTTGTTATCATCCC
ATCTCTCTAAACAAACGAACGCGCAAAGCGGCACTAATTAATCAGGATAC
GTGTTGTTTGTCGGCCGGTCAGCATTGCAACCCGGAACATGTTGGCTGAA
CCTGTCAAACTCGGGAATTGATATGAGATGAGATGGGCTGGTCGATCAGG
CGTAGCAAGCACAGCAAAATGGAAAAACGCCTCCTAATCTTATAGTATAC
TAGCGCTCCTGGACGGCAGACGAATACCGATTTTCTTAACTCTAACAATA
GTGTCACAAAGCCTGTGTACTTTAACTGGCGCTCCCCGACACCAAAACGC
CTCTGCATTAAATACTTGAAACAACCCGATGGATGGGCTACGGCAGATTG
CGAGACCCGACGGCTGTACGACGACCTCTTCGCCGACTACTCCCTGTCCG
AGGGCAAGACCCTGTCAAAGGCAGAGAGGAAGCGGCGGGGACTGATGGAC
GACAAGGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10715:2040..3398+

>mRNA_S-dermatodea_contig10715.494.1 ID=mRNA_S-dermatodea_contig10715.494.1|Name=mRNA_S-dermatodea_contig10715.494.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at S-dermatodea_contig10715:2040..3398+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCAAGGGGTTCTTGAAGGAGCTCATCATAAGGAAGAACCCAGCCTTGCT
CGAGACCTTCGCCGGCTTTGGAAGCAACCCTAACTTCCTCCAAGACCTAC
ACCAGCTCATGGGGCAAGGGGTTCTTGAAGGAGCTCATCATAAGGAAGAA
CCCAGCCTTGCTCGAGACCTTCGCCGGCTTTGGAAGCAACCCTAACTTCC
TCCAAGACCTACACCAGCTCATGGATTGCGAGACCCGACGGCTGTACGAC
GACCTCTTCGCCGACTACTCCCTGTCCGAGGGCAAGACCCTGTCAAAGGC
AGAGAGGAAGCGGCGGGGACTGATGGACGACAAGGCGATTGCGAGACCCG
ACGGCTGTACGACGACCTCTTCGCCGACTACTCCCTGTCCGAGGGCAAGA
CCCTGTCAAAGGCAGAGAGGAAGCGGCGGGGACTGATGGACGACAAGGCG
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