mRNA_S-dermatodea_contig10711.492.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10711.492.1
Unique NamemRNA_S-dermatodea_contig10711.492.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig10711.492.1 vs. uniprot
Match: A0A6H5JX88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX88_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 1.520e-38
Identity = 68/80 (85.00%), Postives = 75/80 (93.75%), Query Frame = 1
Query:   10 TQVDYSDIIAGRPKEVGLKVLASVCGGVKDREGLRFVDVSDNAMGPDGVDACRPAIEGKKELEALLMCNDGLSEAAMMVV 249
            +QVD+SDIIAGRPKEVGL+VLA+VCGGV++REGL FVDVS+NAMGPDGVDACRPAIEGKKEL ALLMCNDGLS AAM  V
Sbjct:   36 SQVDFSDIIAGRPKEVGLEVLAAVCGGVREREGLTFVDVSENAMGPDGVDACRPAIEGKKELRALLMCNDGLSAAAMEAV 115          
BLAST of mRNA_S-dermatodea_contig10711.492.1 vs. uniprot
Match: D8LRW6_ECTSI (Ran-GTPase activating protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRW6_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 1.060e-37
Identity = 68/80 (85.00%), Postives = 75/80 (93.75%), Query Frame = 1
Query:   10 TQVDYSDIIAGRPKEVGLKVLASVCGGVKDREGLRFVDVSDNAMGPDGVDACRPAIEGKKELEALLMCNDGLSEAAMMVV 249
            T+VD+SDIIAGRPKEVGL+VLA+VCGGV++REGL FVDVS+NAMGPDGVDACRPAIEGKKEL ALLMCNDGLS AAM  V
Sbjct:  215 TEVDFSDIIAGRPKEVGLEVLAAVCGGVREREGLTFVDVSENAMGPDGVDACRPAIEGKKELRALLMCNDGLSAAAMEAV 294          
BLAST of mRNA_S-dermatodea_contig10711.492.1 vs. uniprot
Match: A0A835ZA71_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA71_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.100e-21
Identity = 48/81 (59.26%), Postives = 63/81 (77.78%), Query Frame = 1
Query:   10 TQVDYSDIIAGRPKEVGLKVLASVCGGVKDREGLRFVDVSDNAMGPDGVDACRPAIEGKKE-LEALLMCNDGLSEAAMMVV 249
            T+ D SD+IAGRP+++ L+VLA++CGG+  R  L  +DVSDNAMG  GV+ACR A+EG++E L AL MCNDGLS +AM  V
Sbjct:   74 TEADISDVIAGRPEDMALRVLAAICGGLAGRS-LSLIDVSDNAMGEKGVNACRAALEGQRETLSALRMCNDGLSASAMEAV 153          
BLAST of mRNA_S-dermatodea_contig10711.492.1 vs. uniprot
Match: A0A2D4CFZ3_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CFZ3_PYTIN)

HSP 1 Score: 76.3 bits (186), Expect = 2.410e-14
Identity = 36/83 (43.37%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    1 KTHTQVDYSDIIAGRPKEVGLKVLASVCGGVKDREGLRFVDVSDNAMGPDGVDACRPAIEGKKELEALLMCNDGLSEAAMMVV 249
            +T T VD++D+IAGRP++  L+VLA++C  ++  + L  +D+SDNA+G  GV AC   + G++EL  +  CN+G+S AA  V+
Sbjct:   76 ETLTSVDFADMIAGRPEDEALQVLATLCDALQSIKTLLRIDLSDNALGEKGVRACFGLLLGQEELRHVYFCNNGISAAAAKVI 158          
BLAST of mRNA_S-dermatodea_contig10711.492.1 vs. uniprot
Match: A0A8J4S058_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae 00238/432 TaxID=1284355 RepID=A0A8J4S058_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 7.330e-14
Identity = 35/80 (43.75%), Postives = 56/80 (70.00%), Query Frame = 1
Query:   10 TQVDYSDIIAGRPKEVGLKVLASVCGGVKDREGLRFVDVSDNAMGPDGVDACRPAIEGKKELEALLMCNDGLSEAAMMVV 249
            T VD++D+IAGRP++  L+VLA++C  + D + L  +D+SDNA+G  GV AC   +  ++EL+ +  CN+G+S AA  V+
Sbjct:   76 TSVDFADMIAGRPEDEALQVLATLCDALSDIKTLGRIDLSDNALGEKGVRACFGLLLNQEELQHVYFCNNGISAAAAGVI 155          
BLAST of mRNA_S-dermatodea_contig10711.492.1 vs. uniprot
Match: W2PQ73_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PQ73_PHYPN)

HSP 1 Score: 73.6 bits (179), Expect = 8.640e-14
Identity = 33/80 (41.25%), Postives = 56/80 (70.00%), Query Frame = 1
Query:   10 TQVDYSDIIAGRPKEVGLKVLASVCGGVKDREGLRFVDVSDNAMGPDGVDACRPAIEGKKELEALLMCNDGLSEAAMMVV 249
            T VD++D+IAGRP++  L+VLA++C  +   + L  +D+SDNA+G  GV AC   ++ +++L+ +  CN+G+S AA  V+
Sbjct:   74 TSVDFADMIAGRPEDEALQVLATLCDALSAIKSLTRIDLSDNALGEKGVRACFGLLQNQEKLQHMYFCNNGISAAAAGVI 153          
BLAST of mRNA_S-dermatodea_contig10711.492.1 vs. uniprot
Match: A0A6A3J101_9STRA (Uncharacterized protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3J101_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.570e-13
Identity = 33/80 (41.25%), Postives = 56/80 (70.00%), Query Frame = 1
Query:   10 TQVDYSDIIAGRPKEVGLKVLASVCGGVKDREGLRFVDVSDNAMGPDGVDACRPAIEGKKELEALLMCNDGLSEAAMMVV 249
            T VD++D+IAGRP++  L+VLA++C  +   + L  +D+SDNA+G  GV AC   ++ +++L+ +  CN+G+S AA  V+
Sbjct:  528 TSVDFADMIAGRPEDEALQVLATLCDALSSIKTLTRIDLSDNALGEKGVRACFGLLQNQEQLQHMYFCNNGISAAAAGVI 607          
BLAST of mRNA_S-dermatodea_contig10711.492.1 vs. uniprot
Match: A0A225WYD6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WYD6_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.990e-13
Identity = 34/82 (41.46%), Postives = 57/82 (69.51%), Query Frame = 1
Query:    4 THTQVDYSDIIAGRPKEVGLKVLASVCGGVKDREGLRFVDVSDNAMGPDGVDACRPAIEGKKELEALLMCNDGLSEAAMMVV 249
            T T VD++D+IAGRP++  L+VLA++C  +   + L  +D+SDNA+G  GV AC   ++ +++L+ +  CN+G+S AA  V+
Sbjct:   73 TLTSVDFADMIAGRPEDEALQVLATLCDALSAIKTLTRIDLSDNALGEKGVRACFGLLQHQEQLQHMFFCNNGISAAAAGVI 154          
BLAST of mRNA_S-dermatodea_contig10711.492.1 vs. uniprot
Match: W2J3U5_PHYPR (Uncharacterized protein (Fragment) n=13 Tax=Phytophthora TaxID=4783 RepID=W2J3U5_PHYPR)

HSP 1 Score: 73.6 bits (179), Expect = 2.140e-13
Identity = 33/80 (41.25%), Postives = 56/80 (70.00%), Query Frame = 1
Query:   10 TQVDYSDIIAGRPKEVGLKVLASVCGGVKDREGLRFVDVSDNAMGPDGVDACRPAIEGKKELEALLMCNDGLSEAAMMVV 249
            T VD++D+IAGRP++  L+VLA++C  +   + L  +D+SDNA+G  GV AC   ++ +++L+ +  CN+G+S AA  V+
Sbjct:   91 TSVDFADMIAGRPEDEALQVLATLCDALSAIKSLTRIDLSDNALGEKGVRACFGLLQNQEKLQHMYFCNNGISAAAAGVI 170          
BLAST of mRNA_S-dermatodea_contig10711.492.1 vs. uniprot
Match: A0A0W8DJV1_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DJV1_PHYNI)

HSP 1 Score: 73.6 bits (179), Expect = 2.160e-13
Identity = 33/80 (41.25%), Postives = 56/80 (70.00%), Query Frame = 1
Query:   10 TQVDYSDIIAGRPKEVGLKVLASVCGGVKDREGLRFVDVSDNAMGPDGVDACRPAIEGKKELEALLMCNDGLSEAAMMVV 249
            T VD++D+IAGRP++  L+VLA++C  +   + L  +D+SDNA+G  GV AC   ++ +++L+ +  CN+G+S AA  V+
Sbjct:  393 TSVDFADMIAGRPEDEALQVLATLCDALSAIKSLTRIDLSDNALGEKGVRACFGLLQNQEKLQHMYFCNNGISAAAAGVI 472          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10711.492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JX88_9PHAE1.520e-3885.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRW6_ECTSI1.060e-3785.00Ran-GTPase activating protein n=1 Tax=Ectocarpus s... [more]
A0A835ZA71_9STRA1.100e-2159.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2D4CFZ3_PYTIN2.410e-1443.37Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
A0A8J4S058_9STRA7.330e-1443.75Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
W2PQ73_PHYPN8.640e-1441.25Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
A0A6A3J101_9STRA1.570e-1341.25Uncharacterized protein n=2 Tax=Phytophthora rubi ... [more]
A0A225WYD6_9STRA1.990e-1341.46Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
W2J3U5_PHYPR2.140e-1341.25Uncharacterized protein (Fragment) n=13 Tax=Phytop... [more]
A0A0W8DJV1_PHYNI2.160e-1341.25Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10711contigS-dermatodea_contig10711:794..1042 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.7
Seed ortholog evalue1.5e-31
Seed eggNOG ortholog2880.D8LRW6
KEGG koko:K02909,ko:K14319
KEGG Pathwayko03010,ko03013,map03010,map03013
KEGG ModuleM00178,M00427
EggNOG free text desc.GTPase activator activity
EggNOG OGsCOG5238@1,KOG1909@2759
COG Functional cat.AT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03019
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRan-GTPase activating protein
Ec32 orthologEc-08_002700.1
Exons1
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924170.330792-CDS-S-dermatodea_contig10711:793..10421622924170.330792-CDS-S-dermatodea_contig10711:793..1042Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10711 794..1042 -
1694079065.7851436-CDS-S-dermatodea_contig10711:793..10421694079065.7851436-CDS-S-dermatodea_contig10711:793..1042Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10711 794..1042 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10711.492.1prot_S-dermatodea_contig10711.492.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10711 794..1042 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10711.492.1

>prot_S-dermatodea_contig10711.492.1 ID=prot_S-dermatodea_contig10711.492.1|Name=mRNA_S-dermatodea_contig10711.492.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=83bp
KTHTQVDYSDIIAGRPKEVGLKVLASVCGGVKDREGLRFVDVSDNAMGPD
GVDACRPAIEGKKELEALLMCNDGLSEAAMMVV
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mRNA from alignment at S-dermatodea_contig10711:794..1042-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10711.492.1 ID=mRNA_S-dermatodea_contig10711.492.1|Name=mRNA_S-dermatodea_contig10711.492.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=249bp|location=Sequence derived from alignment at S-dermatodea_contig10711:794..1042- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAAACACACACACAGGTGGACTACAGCGACATCATCGCCGGCAGACCGAA GGAGGTGGGCCTCAAGGTTCTGGCCTCCGTCTGCGGGGGCGTTAAAGACA GGGAGGGGCTTCGCTTCGTCGACGTCAGTGACAACGCCATGGGACCCGAC GGGGTGGACGCTTGCCGGCCGGCAATCGAAGGCAAGAAGGAGCTCGAAGC GCTCCTCATGTGCAACGACGGCCTCTCTGAGGCAGCAATGATGGTTGTT
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Coding sequence (CDS) from alignment at S-dermatodea_contig10711:794..1042-

>mRNA_S-dermatodea_contig10711.492.1 ID=mRNA_S-dermatodea_contig10711.492.1|Name=mRNA_S-dermatodea_contig10711.492.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at S-dermatodea_contig10711:794..1042- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAAACACACACACAGGTGGACTACAGCGACATCATCGCCGGCAGACCGAA
GGAGGTGGGCCTCAAGGTTCTGGCCTCCGTCTGCGGGGGCGTTAAAGACA
GGGAGGGGCTTCGCTTCGTCGACGTCAGTGACAACGCCATGGGACCCGAC
GGGGTGGACGCTTGCCGGCCGGCAATCGAAGGCAAGAAGGAGCTCGAAGC
GCTCCTCATGTGCAACGACGGCCTCTCTGAGGCAGCAATGATGGTTGTTA
AAACACACACACAGGTGGACTACAGCGACATCATCGCCGGCAGACCGAAG
GAGGTGGGCCTCAAGGTTCTGGCCTCCGTCTGCGGGGGCGTTAAAGACAG
GGAGGGGCTTCGCTTCGTCGACGTCAGTGACAACGCCATGGGACCCGACG
GGGTGGACGCTTGCCGGCCGGCAATCGAAGGCAAGAAGGAGCTCGAAGCG
CTCCTCATGTGCAACGACGGCCTCTCTGAGGCAGCAATGATGGTTGTT
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