mRNA_S-dermatodea_contig10708.490.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10708.490.1
Unique NamemRNA_S-dermatodea_contig10708.490.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10708.490.1 vs. uniprot
Match: D7G8N6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8N6_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 1.090e-51
Identity = 82/120 (68.33%), Postives = 98/120 (81.67%), Query Frame = 1 
Query:    1 QIVSFVYNGEDVVDREKIIAVLHHYITVSSHSKSHAMGNSLADRILLDDRVRDTLAESTWTTTALHYGLVYGTQGPLTFPRNKNNKWMGLGTVATRDSILAEWHNMSSLGADHGDIQRWS 360
            +IVSFV NGE    RE++  +LHHY + S+H+K H MGNSLADRIL+DDRV + L+ESTWTTTALH+GL YGTQGPLT PRN+ NKW GLG VATRDS++AE  NMSSLGADH D +RW+
Sbjct:   74 KIVSFVVNGEAWHSRERMYGLLHHYHSGSAHTKCHMMGNSLADRILVDDRVTEKLSESTWTTTALHHGLQYGTQGPLTHPRNERNKWTGLGAVATRDSVVAEGDNMSSLGADHADKKRWA 193
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BLAST of mRNA_S-dermatodea_contig10708.490.1 vs. uniprot
Match: A0A6H5LBR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBR7_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 3.030e-29
Identity = 55/82 (67.07%), Postives = 67/82 (81.71%), Query Frame = 1 
Query:    1 QIVSFVYNGEDVVDREKIIAVLHHYITVSSHSKSHAMGNSLADRILLDDRVRDTLAESTWTTTALHYGLVYGTQGPLTFPRN 246
            +IVSFV NGE    RE++  +LHHY + S+H+K H MGNSLADRIL+DDRV + L+ESTWTTTALH+GL YGTQGPLT PR+
Sbjct:  110 KIVSFVVNGEAWHSRERMYGLLHHYHSGSAHTKCHMMGNSLADRILVDDRVTEKLSESTWTTTALHHGLQYGTQGPLTHPRH 191
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10708.490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8N6_ECTSI1.090e-5168.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LBR7_9PHAE3.030e-2967.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10708contigS-dermatodea_contig10708:84..761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score77.8
Seed ortholog evalue3.8e-12
Seed eggNOG ortholog7739.XP_002597731.1
EggNOG OGs2DAM2@1,2TJVI@2759,39GRE@33154,3C1VI@33208
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924170.218598-CDS-S-dermatodea_contig10708:83..3251622924170.218598-CDS-S-dermatodea_contig10708:83..325Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10708 84..325 +
1694079065.7316813-CDS-S-dermatodea_contig10708:83..3251694079065.7316813-CDS-S-dermatodea_contig10708:83..325Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10708 84..325 +
1622924170.2277849-CDS-S-dermatodea_contig10708:643..7611622924170.2277849-CDS-S-dermatodea_contig10708:643..761Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10708 644..761 +
1694079065.74147-CDS-S-dermatodea_contig10708:643..7611694079065.74147-CDS-S-dermatodea_contig10708:643..761Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10708 644..761 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10708.490.1prot_S-dermatodea_contig10708.490.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10708 84..761 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10708.490.1

>prot_S-dermatodea_contig10708.490.1 ID=prot_S-dermatodea_contig10708.490.1|Name=mRNA_S-dermatodea_contig10708.490.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=120bp
QIVSFVYNGEDVVDREKIIAVLHHYITVSSHSKSHAMGNSLADRILLDDR
VRDTLAESTWTTTALHYGLVYGTQGPLTFPRNKNNKWMGLGTVATRDSIL
AEWHNMSSLGADHGDIQRWS
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mRNA from alignment at S-dermatodea_contig10708:84..761+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10708.490.1 ID=mRNA_S-dermatodea_contig10708.490.1|Name=mRNA_S-dermatodea_contig10708.490.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=678bp|location=Sequence derived from alignment at S-dermatodea_contig10708:84..761+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGATCGTCTCGTTCGTGTACAACGGAGAGGATGTCGTCGACCGAGAGAA
GATTATCGCCGTCCTGCACCACTACATCACCGTCAGCTCCCACTCCAAGT
CGCACGCCATGGGTAACTCGCTGGCCGACCGCATCCTCCTGGACGACCGC
GTGCGCGATACGCTGGCGGAGTCTACCTGGACTACCACGGCGCTGCACTA
CGGGCTGGTCTACGGAACGCAGGGACCCTTAACGTTCCCCAGGTATTGGC
AATAAGACAAACAGATAGCCTTTAACCTAGAGTGAGCGCCATTCCTTTTT
CGTCTTCGTGTGATACCTATGTATCTCGTGATAAGAGGTGTTGTCTCTGC
TCGTGGGGTTTTCGTTTGAGCCTTGTGGTGAGAATGTCGAAACGCCAAAT
GCCGTTGGTGGCACACAGTACGGTGTGCCGTGTGAGAAATTGGAACACTT
GGTGGGCGTGTCTCAGCGTTGCATTGATTCGCTTTGGGAGTGATTCATCG
GCCCTCACACCATGGAAATCCTCAAACACGAGCTCTACTAACACCGCCCA
CAATGAGCAGGAACAAAAACAACAAGTGGATGGGTCTGGGCACCGTCGCC
ACGCGCGACTCCATCCTTGCTGAGTGGCACAACATGAGCTCCCTCGGGGC
CGACCACGGGGACATTCAGCGTTGGTCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10708:84..761+

>mRNA_S-dermatodea_contig10708.490.1 ID=mRNA_S-dermatodea_contig10708.490.1|Name=mRNA_S-dermatodea_contig10708.490.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at S-dermatodea_contig10708:84..761+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGATCGTCTCGTTCGTGTACAACGGAGAGGATGTCGTCGACCGAGAGAA
GATTATCGCCGTCCTGCACCACTACATCACCGTCAGCTCCCACTCCAAGT
CGCACGCCATGGGTAACTCGCTGGCCGACCGCATCCTCCTGGACGACCGC
GTGCGCGATACGCTGGCGGAGTCTACCTGGACTACCACGGCGCTGCACTA
CGGGCTGGTCTACGGAACGCAGGGACCCTTAACGTTCCCCAGCAGATCGT
CTCGTTCGTGTACAACGGAGAGGATGTCGTCGACCGAGAGAAGATTATCG
CCGTCCTGCACCACTACATCACCGTCAGCTCCCACTCCAAGTCGCACGCC
ATGGGTAACTCGCTGGCCGACCGCATCCTCCTGGACGACCGCGTGCGCGA
TACGCTGGCGGAGTCTACCTGGACTACCACGGCGCTGCACTACGGGCTGG
TCTACGGAACGCAGGGACCCTTAACGTTCCCCAGGAACAAAAACAACAAG
TGGATGGGTCTGGGCACCGTCGCCACGCGCGACTCCATCCTTGCTGAGTG
GCACAACATGAGCTCCCTCGGGGCCGACCACGGGGACATTCAGCGTTGGT
CCGAACAAAAACAACAAGTGGATGGGTCTGGGCACCGTCGCCACGCGCGA
CTCCATCCTTGCTGAGTGGCACAACATGAGCTCCCTCGGGGCCGACCACG
GGGACATTCAGCGTTGGTCC
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