mRNA_S-dermatodea_contig10707.489.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10707.489.1
Unique NamemRNA_S-dermatodea_contig10707.489.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10707.489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10707contigS-dermatodea_contig10707:7214..7674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size462
Cds size375
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924170.1752512-CDS-S-dermatodea_contig10707:7213..75881622924170.1752512-CDS-S-dermatodea_contig10707:7213..7588Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10707 7214..7588 +
1694079065.7059247-CDS-S-dermatodea_contig10707:7213..75881694079065.7059247-CDS-S-dermatodea_contig10707:7213..7588Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10707 7214..7588 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924170.1908336-UTR-S-dermatodea_contig10707:7588..76741622924170.1908336-UTR-S-dermatodea_contig10707:7588..7674Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10707 7589..7674 +
1694079065.7177896-UTR-S-dermatodea_contig10707:7588..76741694079065.7177896-UTR-S-dermatodea_contig10707:7588..7674Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10707 7589..7674 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10707.489.1prot_S-dermatodea_contig10707.489.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10707 7214..7588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10707.489.1

>prot_S-dermatodea_contig10707.489.1 ID=prot_S-dermatodea_contig10707.489.1|Name=mRNA_S-dermatodea_contig10707.489.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=125bp
HAYLRPPRHSEKVIPRKNPTELILPYTESLPHETAERLLRPSRVKALDNP
QLHSHYAVPQTFTPRQHPITALFRQLLPTPIFFPLPAGPPRALVCKKMPH
PAPSKGGTHTCARSRPEVSTSSRR*
back to top

mRNA from alignment at S-dermatodea_contig10707:7214..7674+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10707.489.1 ID=mRNA_S-dermatodea_contig10707.489.1|Name=mRNA_S-dermatodea_contig10707.489.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=461bp|location=Sequence derived from alignment at S-dermatodea_contig10707:7214..7674+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CACGCCTACCTACGCCCACCCCGCCATAGCGAGAAAGTGATCCCGCGCAA
AAATCCGACCGAGCTCATCCTCCCGTACACTGAGAGCCTCCCGCACGAAA
CAGCCGAACGGCTGCTCCGTCCCTCGCGGGTGAAGGCTCTCGACAACCCG
CAACTTCACTCGCACTACGCCGTACCACAAACGTTCACTCCTCGACAGCA
CCCAATCACAGCACTGTTTCGACAGCTCCTCCCCACTCCAATCTTTTTTC
CCCTTCCGGCCGGCCCGCCGCGCGCGCTTGTGTGTAAAAAAATGCCCCAC
CCCGCCCCGTCAAAAGGCGGGACCCACACATGCGCGCGCTCTCGGCCGGA
GGTTTCTACATCGTCACGGCGCTGAGTTCGCCGATAAACATGGATGTGTC
GGAGCGAGGGAAACTAAGCCCGGGGCAGCCAGCAAGGGGAGGGGGAGAAC
GACGCGCGGGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10707:7214..7674+

>mRNA_S-dermatodea_contig10707.489.1 ID=mRNA_S-dermatodea_contig10707.489.1|Name=mRNA_S-dermatodea_contig10707.489.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at S-dermatodea_contig10707:7214..7674+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CACGCCTACCTACGCCCACCCCGCCATAGCGAGAAAGTGATCCCGCGCAA
AAATCCGACCGAGCTCATCCTCCCGTACACTGAGAGCCTCCCGCACGAAA
CAGCCGAACGGCTGCTCCGTCCCTCGCGGGTGAAGGCTCTCGACAACCCG
CAACTTCACTCGCACTACGCCGTACCACAAACGTTCACTCCTCGACAGCA
CCCAATCACAGCACTGTTTCGACAGCTCCTCCCCACTCCAATCTTTTTTC
CCCTTCCGGCCGGCCCGCCGCGCGCGCTTGTGTGTAAAAAAATGCCCCAC
CCCGCCCCGTCAAAAGGCGGGACCCACACATGCGCGCGCTCTCGGCCGGA
GGTTTCTACATCGTCACGGCGCTGACACGCCTACCTACGCCCACCCCGCC
ATAGCGAGAAAGTGATCCCGCGCAAAAATCCGACCGAGCTCATCCTCCCG
TACACTGAGAGCCTCCCGCACGAAACAGCCGAACGGCTGCTCCGTCCCTC
GCGGGTGAAGGCTCTCGACAACCCGCAACTTCACTCGCACTACGCCGTAC
CACAAACGTTCACTCCTCGACAGCACCCAATCACAGCACTGTTTCGACAG
CTCCTCCCCACTCCAATCTTTTTTCCCCTTCCGGCCGGCCCGCCGCGCGC
GCTTGTGTGTAAAAAAATGCCCCACCCCGCCCCGTCAAAAGGCGGGACCC
ACACATGCGCGCGCTCTCGGCCGGAGGTTTCTACATCGTCACGGCGCTGA
back to top