mRNA_S-dermatodea_contig10707.488.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10707.488.1
Unique NamemRNA_S-dermatodea_contig10707.488.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10707.488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10707contigS-dermatodea_contig10707:5634..6080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size449
Cds size351
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924170.1318269-UTR-S-dermatodea_contig10707:5633..57291622924170.1318269-UTR-S-dermatodea_contig10707:5633..5729Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10707 5634..5729 +
1694079065.6803098-UTR-S-dermatodea_contig10707:5633..57291694079065.6803098-UTR-S-dermatodea_contig10707:5633..5729Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10707 5634..5729 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924170.1416044-CDS-S-dermatodea_contig10707:5729..60801622924170.1416044-CDS-S-dermatodea_contig10707:5729..6080Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10707 5730..6080 +
1694079065.6898608-CDS-S-dermatodea_contig10707:5729..60801694079065.6898608-CDS-S-dermatodea_contig10707:5729..6080Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10707 5730..6080 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10707.488.1prot_S-dermatodea_contig10707.488.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10707 5730..6080 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10707.488.1

>prot_S-dermatodea_contig10707.488.1 ID=prot_S-dermatodea_contig10707.488.1|Name=mRNA_S-dermatodea_contig10707.488.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=117bp
MKCTRYACTCISITHTYHTLLSCSCTGKTLRMVETNDNIVSVFLLTCHHH
SPARPEPPYSSDITLRPGGRANERFKKCTPICKDQPTPPNSSGRPMCPTG
HQTRSTKDQPSSVSVFI
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mRNA from alignment at S-dermatodea_contig10707:5634..6080+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10707.488.1 ID=mRNA_S-dermatodea_contig10707.488.1|Name=mRNA_S-dermatodea_contig10707.488.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=447bp|location=Sequence derived from alignment at S-dermatodea_contig10707:5634..6080+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACCACCACCACTACGCCCGGTAACGAGTGCTGCTGTTTTAGGTCGAAGGC
CCGCCGGGGTCCTCCCCAACGGATTTAACAAAAAAACGATAAAAAAATGA
AATGCACCAGGTATGCATGTACATGTATATCCATTACACACACGTACCAC
ACTCTTTTAAGCTGCAGTTGCACAGGCAAAACTCTCCGGATGGTCGAAAC
TAATGATAACATCGTATCGGTCTTCTTGTTGACGTGTCACCATCACTCAC
CCGCGAGGCCCGAACCCCCGTACTCTTCCGACATCACGCTACGGCCGGGG
GGGCGCGCGAACGAACGCTTCAAAAAATGCACTCCGATATGCAAGGACCA
ACCCACCCCACCCAATTCATCCGGTCGGCCGATGTGCCCGACAGGCCATC
AGACACGATCGACAAAGGATCAACCCTCTTCTGTCTCTGTTTTTATC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10707:5634..6080+

>mRNA_S-dermatodea_contig10707.488.1 ID=mRNA_S-dermatodea_contig10707.488.1|Name=mRNA_S-dermatodea_contig10707.488.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at S-dermatodea_contig10707:5634..6080+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAATGCACCAGGTATGCATGTACATGTATATCCATTACACACACGTA
CCACACTCTTTTAAGCTGCAGTTGCACAGGCAAAACTCTCCGGATGGTCG
AAACTAATGATAACATCGTATCGGTCTTCTTGTTGACGTGTCACCATCAC
TCACCCGCGAGGCCCGAACCCCCGTACTCTTCCGACATCACGCTACGGCC
GGGGGGGCGCGCGAACGAACGCTTCAAAAAATGCACTCCGATATGCAAGG
ACCAACCCACCCCACCCAATTCATCCGGTCGGCCGATGTGCCCGACAGGC
CATCAGACACGATCGACAAAGGATCAACCCTCTTCTGTCTCTGTTTTTAT
CATGAAATGCACCAGGTATGCATGTACATGTATATCCATTACACACACGT
ACCACACTCTTTTAAGCTGCAGTTGCACAGGCAAAACTCTCCGGATGGTC
GAAACTAATGATAACATCGTATCGGTCTTCTTGTTGACGTGTCACCATCA
CTCACCCGCGAGGCCCGAACCCCCGTACTCTTCCGACATCACGCTACGGC
CGGGGGGGCGCGCGAACGAACGCTTCAAAAAATGCACTCCGATATGCAAG
GACCAACCCACCCCACCCAATTCATCCGGTCGGCCGATGTGCCCGACAGG
CCATCAGACACGATCGACAAAGGATCAACCCTCTTCTGTCTCTGTTTTTA
TC
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