mRNA_S-dermatodea_contig10701.485.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10701.485.1
Unique NamemRNA_S-dermatodea_contig10701.485.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10701.485.1 vs. uniprot
Match: D7G6P9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6P9_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 8.080e-11
Identity = 44/106 (41.51%), Postives = 62/106 (58.49%), Query Frame = 2 
Query:   50 IVLVATDGDSVRRGMLHEMTGDPSVPAAESLAGLELMHPLRS--GWAQSMDPKHNVKRWRTRLYSGKGVQIAAGRLSLNKETLLRLFKLW--APNKEFTQLFNAAD 355
            IVLVA+DGD VRR +L+  T   S   +E  A  +L+  + S  G  Q  D KHN+KR RTR  S +GV+I+A  L LN ++  +LF+ +   PN+ +  L N  D
Sbjct:  216 IVLVASDGDGVRRRLLYNFT---SSVTSEKFAEFDLLDAMTSEYGVVQCFDLKHNLKRLRTRDISKRGVKISASALPLNCDSFPQLFRWYDCKPNETYRTLLNPDD 318
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BLAST of mRNA_S-dermatodea_contig10701.485.1 vs. uniprot
Match: D7FQM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM1_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.630e-9
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 2 
Query:   50 IVLVATDGDSVRRGMLHEMTGDPSVPAAESLAGLELMHPLRS--GWAQSMDPKHNVKRWRTRLYSGKGVQIAAGRLSLNKETLLRLFKLWAPNKEFTQ--LFNAAD 355
            IVLV +DGD+VRR +LH++T   S   ++ L   +LM    S  G  Q  D KH  KR+RT+  S KGV+++ G L+LN++T   LF++   N E T   LFN  D
Sbjct:  185 IVLVCSDGDAVRRKVLHDLT---SGGTSDVLNVFKLMDKTTSVEGLMQCFDLKHCAKRYRTKDISKKGVRVSGG-LALNRDTYPELFRVHDGNPEATYDALFNPDD 286
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BLAST of mRNA_S-dermatodea_contig10701.485.1 vs. uniprot
Match: D7G0J3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J3_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 1.800e-9
Identity = 43/103 (41.75%), Postives = 59/103 (57.28%), Query Frame = 2 
Query:   50 IVLVATDGDSVRRGMLHEMTGDPSVPAAESLAGLELMHPLRS--GWAQSMDPKHNVKRWRTRLYSGKGVQIAAGRLSLNKETLLRLFKLW--APNKEFTQLFN 346
            IVLVA+DGD VRR +L+  T   S   +E  A  +L+    S  G  Q  D KHN+KR RTR  S +GV+I AG L L  ++  +LF+ +   PN+ +  L N
Sbjct:  121 IVLVASDGDGVRRRLLYNFT---SSVTSEKFAEFDLLDATTSEHGVVQCFDLKHNLKRLRTRDISKRGVKIPAGALPLYCDSFPQLFQWYDCKPNETYRTLLN 220
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10701.485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G6P9_ECTSI8.080e-1141.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FQM1_ECTSI1.630e-942.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0J3_ECTSI1.800e-941.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10701contigS-dermatodea_contig10701:3907..4263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size357
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924170.0033913-CDS-S-dermatodea_contig10701:3906..42631622924170.0033913-CDS-S-dermatodea_contig10701:3906..4263Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10701 3907..4263 +
1694079065.623576-CDS-S-dermatodea_contig10701:3906..42631694079065.623576-CDS-S-dermatodea_contig10701:3906..4263Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10701 3907..4263 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10701.485.1prot_S-dermatodea_contig10701.485.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10701 3907..4263 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10701.485.1

>prot_S-dermatodea_contig10701.485.1 ID=prot_S-dermatodea_contig10701.485.1|Name=mRNA_S-dermatodea_contig10701.485.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=119bp
DTACVRRGCALPGRHPHCACGDGRRFGATGYASRDDWGPFGSRCRIPRRL
GAYAPAEKRVGAIDGPEAQCQALAHTSVQRERRANRCGQAFAEQGNASSF
VQALGSEQGIHATVQCCR*
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mRNA from alignment at S-dermatodea_contig10701:3907..4263+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10701.485.1 ID=mRNA_S-dermatodea_contig10701.485.1|Name=mRNA_S-dermatodea_contig10701.485.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=357bp|location=Sequence derived from alignment at S-dermatodea_contig10701:3907..4263+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GATACTGCGTGTGTGCGCCGAGGATGCGCGCTTCCGGGACGTCATCCGCA
TTGTGCTTGTGGCGACGGACGGAGATTCGGTGCGACGGGGTATGCTTCAC
GAGATGACTGGGGACCCTTCGGTTCCCGCTGCAGAATCCCTCGCAGGCTT
GGAGCTTATGCACCCGCTGAGAAGCGGGTGGGCGCAATCGATGGACCCGA
AGCACAATGTCAAGCGTTGGCGCACACGTCTGTACAGCGGGAAAGGCGTG
CAAATCGCTGCGGGCAGGCTTTCGCTGAACAAGGAAACGCTTCTTCGTTT
GTTCAAGCTTTGGGCTCCGAACAAGGAATTCACGCAACTGTTCAATGCTG
CCGATAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10701:3907..4263+

>mRNA_S-dermatodea_contig10701.485.1 ID=mRNA_S-dermatodea_contig10701.485.1|Name=mRNA_S-dermatodea_contig10701.485.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at S-dermatodea_contig10701:3907..4263+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GATACTGCGTGTGTGCGCCGAGGATGCGCGCTTCCGGGACGTCATCCGCA
TTGTGCTTGTGGCGACGGACGGAGATTCGGTGCGACGGGGTATGCTTCAC
GAGATGACTGGGGACCCTTCGGTTCCCGCTGCAGAATCCCTCGCAGGCTT
GGAGCTTATGCACCCGCTGAGAAGCGGGTGGGCGCAATCGATGGACCCGA
AGCACAATGTCAAGCGTTGGCGCACACGTCTGTACAGCGGGAAAGGCGTG
CAAATCGCTGCGGGCAGGCTTTCGCTGAACAAGGAAACGCTTCTTCGTTT
GTTCAAGCTTTGGGCTCCGAACAAGGAATTCACGCAACTGTTCAATGCTG
CCGATAAGATACTGCGTGTGTGCGCCGAGGATGCGCGCTTCCGGGACGTC
ATCCGCATTGTGCTTGTGGCGACGGACGGAGATTCGGTGCGACGGGGTAT
GCTTCACGAGATGACTGGGGACCCTTCGGTTCCCGCTGCAGAATCCCTCG
CAGGCTTGGAGCTTATGCACCCGCTGAGAAGCGGGTGGGCGCAATCGATG
GACCCGAAGCACAATGTCAAGCGTTGGCGCACACGTCTGTACAGCGGGAA
AGGCGTGCAAATCGCTGCGGGCAGGCTTTCGCTGAACAAGGAAACGCTTC
TTCGTTTGTTCAAGCTTTGGGCTCCGAACAAGGAATTCACGCAACTGTTC
AATGCTGCCGATAA
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