mRNA_S-dermatodea_contig10701.484.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10701.484.1
Unique NamemRNA_S-dermatodea_contig10701.484.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10701.484.1 vs. uniprot
Match: A0A6H5KA62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA62_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 5.010e-18
Identity = 43/60 (71.67%), Postives = 48/60 (80.00%), Query Frame = 2 
Query:    5 QLQVDELAQEKKARHCQKNDTILGLCVEHTDESDVRFKNVAHVERVANKLKNGEIHLGSE 184
            Q QVDE+AQEK ARH Q NDTILGLC + T ES+V FKN+ HVER+  KLK GEIHLGSE
Sbjct:  147 QSQVDEIAQEKHARHYQNNDTILGLCAQCTGESNVYFKNINHVERLGGKLKKGEIHLGSE 206
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BLAST of mRNA_S-dermatodea_contig10701.484.1 vs. uniprot
Match: UPI001B879073 (uncharacterized protein n=1 Tax=Suillus clintonianus TaxID=1904413 RepID=UPI001B879073)

HSP 1 Score: 52.4 bits (124), Expect = 1.290e-5
Identity = 29/75 (38.67%), Postives = 41/75 (54.67%), Query Frame = 2 
Query:    8 LQVDELAQEKKARHCQKNDTILGLCVEHTDESDVRFKNVAHVERVANKLKNGEIHLGSENTVLSLQGFGSSPTTP 232
            L VDE+A E+ A H  + + I GLC +H+   D   +    V R+A K+ +GE+HLG E TV+    FG     P
Sbjct:  172 LMVDEMAIEEMAIHYPRYNKIGGLCWKHSSLIDPVLRTYDSVVRIAQKIHDGEVHLGKEVTVIGAACFGEEELYP 246
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BLAST of mRNA_S-dermatodea_contig10701.484.1 vs. uniprot
Match: UPI001B865EA9 (uncharacterized protein n=1 Tax=Suillus clintonianus TaxID=1904413 RepID=UPI001B865EA9)

HSP 1 Score: 50.8 bits (120), Expect = 4.700e-5
Identity = 28/75 (37.33%), Postives = 40/75 (53.33%), Query Frame = 2 
Query:    8 LQVDELAQEKKARHCQKNDTILGLCVEHTDESDVRFKNVAHVERVANKLKNGEIHLGSENTVLSLQGFGSSPTTP 232
            L VDE+A E+ A H  + + I GLC +H+   D   +      R+A K+ +GE+HLG E TV+    FG     P
Sbjct:  193 LMVDEMAIEEMAIHYPRYNKIGGLCWKHSSLIDPVLRTYDSAVRIAQKIHDGEVHLGKEVTVIGAACFGEEELYP 267
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BLAST of mRNA_S-dermatodea_contig10701.484.1 vs. uniprot
Match: UPI001B86D717 (uncharacterized protein n=1 Tax=Suillus plorans TaxID=116603 RepID=UPI001B86D717)

HSP 1 Score: 50.4 bits (119), Expect = 6.120e-5
Identity = 28/82 (34.15%), Postives = 42/82 (51.22%), Query Frame = 2 
Query:    8 LQVDELAQEKKARHCQKNDTILGLCVEHTDESDVRFKNVAHVERVANKLKNGEIHLGSENTVLSLQGFGSS---PTTPSPWC 244
            L +DE+A E+ A H  K + + GLC +H+   D   +       +A K+ +GE+HLG E TV+    FG     P   +P C
Sbjct:  124 LMIDEIALEEMAIHFSKYNKVGGLCWKHSHLVDPVLRTYESAVNIAQKIHDGEVHLGKELTVIGASCFGRDKIFPILAAPTC 205
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BLAST of mRNA_S-dermatodea_contig10701.484.1 vs. uniprot
Match: A0A0D0ADY0_9AGAM (Uncharacterized protein (Fragment) n=2 Tax=Suillus luteus UH-Slu-Lm8-n1 TaxID=930992 RepID=A0A0D0ADY0_9AGAM)

HSP 1 Score: 50.4 bits (119), Expect = 6.140e-5
Identity = 27/82 (32.93%), Postives = 43/82 (52.44%), Query Frame = 2 
Query:    8 LQVDELAQEKKARHCQKNDTILGLCVEHTDESDVRFKNVAHVERVANKLKNGEIHLGSENTVLSLQGFGSS---PTTPSPWC 244
            L +D++A E+ A H  K + + GLC +H+   D   +       +A K+ +GE+HLG E TV+ +  FG     P   +P C
Sbjct:  145 LMIDKIALEEMAVHFSKYNKVAGLCWKHSHLVDPVLRTYESAVTIAQKIHDGEVHLGKELTVIGVACFGEDELYPILAAPTC 226
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BLAST of mRNA_S-dermatodea_contig10701.484.1 vs. uniprot
Match: UPI001B8631CE (uncharacterized protein n=1 Tax=Suillus clintonianus TaxID=1904413 RepID=UPI001B8631CE)

HSP 1 Score: 50.4 bits (119), Expect = 6.560e-5
Identity = 28/75 (37.33%), Postives = 41/75 (54.67%), Query Frame = 2 
Query:    8 LQVDELAQEKKARHCQKNDTILGLCVEHTDESDVRFKNVAHVERVANKLKNGEIHLGSENTVLSLQGFGSSPTTP 232
            L VDE+A E+ A H  + + I GLC +H++  D   +      R+A K+ +G++HLG E TVL    FG     P
Sbjct:  145 LMVDEMAIEEMAVHYSQYNKIGGLCWKHSNLIDPVLRTYDSAIRIAQKIHDGDVHLGKEVTVLGAACFGEDELYP 219
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BLAST of mRNA_S-dermatodea_contig10701.484.1 vs. uniprot
Match: UPI001B882D17 (uncharacterized protein n=1 Tax=Suillus subalutaceus TaxID=48586 RepID=UPI001B882D17)

HSP 1 Score: 49.7 bits (117), Expect = 9.680e-5
Identity = 25/69 (36.23%), Postives = 38/69 (55.07%), Query Frame = 2 
Query:    8 LQVDELAQEKKARHCQKNDTILGLCVEHTDESDVRFKNVAHVERVANKLKNGEIHLGSENTVLSLQGFG 214
            L +DE+A E+ A H  K + + GLC +H+   D   +       +A K+ +GE+HLG E TV+    FG
Sbjct:   73 LMIDEIALEEMAVHFSKYNKVGGLCWKHSHLVDPVLQTYKSAMNIAQKIHDGEVHLGKELTVIGASCFG 141
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10701.484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KA62_9PHAE5.010e-1871.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001B8790731.290e-538.67uncharacterized protein n=1 Tax=Suillus clintonian... [more]
UPI001B865EA94.700e-537.33uncharacterized protein n=1 Tax=Suillus clintonian... [more]
UPI001B86D7176.120e-534.15uncharacterized protein n=1 Tax=Suillus plorans Ta... [more]
A0A0D0ADY0_9AGAM6.140e-532.93Uncharacterized protein (Fragment) n=2 Tax=Suillus... [more]
UPI001B8631CE6.560e-537.33uncharacterized protein n=1 Tax=Suillus clintonian... [more]
UPI001B882D179.680e-536.23uncharacterized protein n=1 Tax=Suillus subalutace... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10701contigS-dermatodea_contig10701:3150..3614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size320
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924169.9529083-CDS-S-dermatodea_contig10701:3149..32161622924169.9529083-CDS-S-dermatodea_contig10701:3149..3216Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10701 3150..3216 +
1694079065.6075366-CDS-S-dermatodea_contig10701:3149..32161694079065.6075366-CDS-S-dermatodea_contig10701:3149..3216Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10701 3150..3216 +
1622924169.9693353-CDS-S-dermatodea_contig10701:3363..36141622924169.9693353-CDS-S-dermatodea_contig10701:3363..3614Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10701 3364..3614 +
1694079065.615447-CDS-S-dermatodea_contig10701:3363..36141694079065.615447-CDS-S-dermatodea_contig10701:3363..3614Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10701 3364..3614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10701.484.1prot_S-dermatodea_contig10701.484.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10701 3150..3614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10701.484.1

>prot_S-dermatodea_contig10701.484.1 ID=prot_S-dermatodea_contig10701.484.1|Name=mRNA_S-dermatodea_contig10701.484.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=106bp
ASAPSGRARPGEEGAALPEERHYSWFVRGAHGRIRRQVQERRPRGTRCQQ
TEEWGDSPWQRKHRALSAGLREQSHHSLPVVSFSSCKSSNPKQQELVIRT
VSTLQ*
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mRNA from alignment at S-dermatodea_contig10701:3150..3614+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10701.484.1 ID=mRNA_S-dermatodea_contig10701.484.1|Name=mRNA_S-dermatodea_contig10701.484.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=465bp|location=Sequence derived from alignment at S-dermatodea_contig10701:3150..3614+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCATCAGCTCCAAGTGGACGAGCTCGCCCAGGAGAAGAAGGCGCGGCACT
GCCAGAAGAACGACACTGTAAGTCAGTCATGAACTCCCCCCGTCTTATGG
AAATTTTCGAGCGAGCCGAGCGTTGCTTGGGTCACGTCCACGCTCCTTTG
ATGTGGGCGCGTATCAACACAGCGACTCGCGTACGGTTTTCCTTTTACCT
GTTGCCCCCTGCAGATTCTTGGTTTGTGCGTGGAGCACACGGACGAATCA
GACGTCAGGTTCAAGAACGTCGCCCACGTGGAACGCGTTGCCAACAAACT
GAAGAATGGGGAGATTCACCTTGGCAGCGAAAACACCGTGCTCTCTCTGC
AGGGCTTCGGGAGCAGTCCCACCACTCCCTCCCCGTGGTGTCTTTCAGCA
GCTGCAAATCCAGCAACCCTAAGCAGCAGGAACTGGTAATACGCACGGTG
AGTACGTTACAGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10701:3150..3614+

>mRNA_S-dermatodea_contig10701.484.1 ID=mRNA_S-dermatodea_contig10701.484.1|Name=mRNA_S-dermatodea_contig10701.484.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at S-dermatodea_contig10701:3150..3614+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCATCAGCTCCAAGTGGACGAGCTCGCCCAGGAGAAGAAGGCGCGGCACT
GCCAGAAGAACGACACTGCATCAGCTCCAAGTGGACGAGCTCGCCCAGGA
GAAGAAGGCGCGGCACTGCCAGAAGAACGACACTATTCTTGGTTTGTGCG
TGGAGCACACGGACGAATCAGACGTCAGGTTCAAGAACGTCGCCCACGTG
GAACGCGTTGCCAACAAACTGAAGAATGGGGAGATTCACCTTGGCAGCGA
AAACACCGTGCTCTCTCTGCAGGGCTTCGGGAGCAGTCCCACCACTCCCT
CCCCGTGGTGTCTTTCAGCAGCTGCAAATCCAGCAACCCTAAGCAGCAGG
AACTGGTAATACGCACGGTGAGTACGTTACAGTAGATTCTTGGTTTGTGC
GTGGAGCACACGGACGAATCAGACGTCAGGTTCAAGAACGTCGCCCACGT
GGAACGCGTTGCCAACAAACTGAAGAATGGGGAGATTCACCTTGGCAGCG
AAAACACCGTGCTCTCTCTGCAGGGCTTCGGGAGCAGTCCCACCACTCCC
TCCCCGTGGTGTCTTTCAGCAGCTGCAAATCCAGCAACCCTAAGCAGCAG
GAACTGGTAATACGCACGGTGAGTACGTTACAGTAG
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