mRNA_S-dermatodea_contig10701.483.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10701.483.1
Unique NamemRNA_S-dermatodea_contig10701.483.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10701.483.1 vs. uniprot
Match: D7G3D8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D8_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.720e-16
Identity = 46/78 (58.97%), Postives = 53/78 (67.95%), Query Frame = 3 
Query:   15 ASQRHRRASWPLHVE*ERAQSELHVHDDEPDGGASAGRRCHSPSDPAEDVKHPEAGVADRQEARGVQEGHDVPRRERH 248
            A QR RRAS PL  E   A S+L VHD+EPD G SA   C     P++DVK  E GVAD Q+A GVQEGHD+PRR+RH
Sbjct:    9 ACQRCRRASEPLERERTGANSQLQVHDNEPDRGPSAEIVCFEGCCPSQDVKPQETGVADVQKASGVQEGHDIPRRKRH 86
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BLAST of mRNA_S-dermatodea_contig10701.483.1 vs. uniprot
Match: A0A6H5KA62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA62_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.140e-9
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:  163 LNIRRQALRIGRKLEGFKKVMMFLGENDISGVRRVLGQALKDG 291
            LN++RQA RIGRKL+ +KKVMMF G+ DI GVRRVL QALKDG
Sbjct:    2 LNLKRQASRIGRKLQEYKKVMMFHGDIDIPGVRRVLAQALKDG 44
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10701.483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3D8_ECTSI1.720e-1658.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KA62_9PHAE1.140e-974.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10701contigS-dermatodea_contig10701:2071..2637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size292
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924169.9140034-CDS-S-dermatodea_contig10701:2070..20951622924169.9140034-CDS-S-dermatodea_contig10701:2070..2095Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10701 2071..2095 +
1694079065.5883276-CDS-S-dermatodea_contig10701:2070..20951694079065.5883276-CDS-S-dermatodea_contig10701:2070..2095Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10701 2071..2095 +
1622924169.9250555-CDS-S-dermatodea_contig10701:2371..26371622924169.9250555-CDS-S-dermatodea_contig10701:2371..2637Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10701 2372..2637 +
1694079065.5985177-CDS-S-dermatodea_contig10701:2371..26371694079065.5985177-CDS-S-dermatodea_contig10701:2371..2637Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10701 2372..2637 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10701.483.1prot_S-dermatodea_contig10701.483.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10701 2071..2637 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10701.483.1

>prot_S-dermatodea_contig10701.483.1 ID=prot_S-dermatodea_contig10701.483.1|Name=mRNA_S-dermatodea_contig10701.483.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=97bp
LVDNTLLNDIVERAGRSMSSEKGRSLNYTYMTMNQTEERARAAAATVQAT
QLKTLNIRRQALRIGRKLEGFKKVMMFLGENDISGVRRVLGQALKDG
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mRNA from alignment at S-dermatodea_contig10701:2071..2637+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10701.483.1 ID=mRNA_S-dermatodea_contig10701.483.1|Name=mRNA_S-dermatodea_contig10701.483.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=567bp|location=Sequence derived from alignment at S-dermatodea_contig10701:2071..2637+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTAGTGGACAACACGCTTCTCAACGGTAAGGTGCATCAACTCCATGCAGG
TCTTGTGCGCGAGCGCGAGTTTTTGTTTTGTCCTGGGGTCGAAAGTCGAA
CGATGTTTTTTCCACGCGTGGTTACGAGCGGAATGTCTGTTTTGTTGAGT
CGTTGAAATCCGCGTCGCTCTTATTCTTCTGCTCCGTCACACGCCTGTTG
TATCATTACAATGTAGTAACCATCGCCGTGAGCGGTCACACATGTTCAGC
AAGTTGAGCACATGTCTCGGCGCTTTCCTCAAAACACTTTGCGTCTCGCA
GACATCGTCGAGCGAGCTGGCCGCTCCATGTCGAGTGAGAAAGGGCGCAG
TCTGAACTACACGTACATGACGATGAACCAGACGGAGGAGCGAGCGCGGG
CCGCCGCTGCCACAGTCCAAGCGACCCAGCTGAAGACGTTAAACATCCGG
AGGCAGGCGTTGCGGATCGGCAGGAAGCTCGAGGGGTTCAAGAAGGTCAT
GATGTTCCTCGGCGAGAACGACATCTCTGGTGTGCGGCGGGTCTTGGGAC
AGGCGCTGAAGGACGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10701:2071..2637+

>mRNA_S-dermatodea_contig10701.483.1 ID=mRNA_S-dermatodea_contig10701.483.1|Name=mRNA_S-dermatodea_contig10701.483.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at S-dermatodea_contig10701:2071..2637+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTAGTGGACAACACGCTTCTCAACGCTAGTGGACAACACGCTTCTCAACG
ACATCGTCGAGCGAGCTGGCCGCTCCATGTCGAGTGAGAAAGGGCGCAGT
CTGAACTACACGTACATGACGATGAACCAGACGGAGGAGCGAGCGCGGGC
CGCCGCTGCCACAGTCCAAGCGACCCAGCTGAAGACGTTAAACATCCGGA
GGCAGGCGTTGCGGATCGGCAGGAAGCTCGAGGGGTTCAAGAAGGTCATG
ATGTTCCTCGGCGAGAACGACATCTCTGGTGTGCGGCGGGTCTTGGGACA
GGCGCTGAAGGACGGCACATCGTCGAGCGAGCTGGCCGCTCCATGTCGAG
TGAGAAAGGGCGCAGTCTGAACTACACGTACATGACGATGAACCAGACGG
AGGAGCGAGCGCGGGCCGCCGCTGCCACAGTCCAAGCGACCCAGCTGAAG
ACGTTAAACATCCGGAGGCAGGCGTTGCGGATCGGCAGGAAGCTCGAGGG
GTTCAAGAAGGTCATGATGTTCCTCGGCGAGAACGACATCTCTGGTGTGC
GGCGGGTCTTGGGACAGGCGCTGAAGGACGGC
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