mRNA_S-dermatodea_contig10694.477.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10694.477.1
Unique NamemRNA_S-dermatodea_contig10694.477.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10694.477.1 vs. uniprot
Match: D7FL70_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL70_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 4.620e-28
Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 1 
Query:    1 RRSHF-QVRLKIWFQFDEFAEMCSHVWPEEPLNPAATQFSPNQLYRKGMLLWEMARPYMDFMQDADCILCWKQPRRR 228
            RR  F +VRL +W+Q+DEFAEMCSH WPEEPL P    FSPNQLYRKGM+ WEM RPY+ F+++ D I  W +PR+R
Sbjct:  227 RRKRFGEVRLILWYQYDEFAEMCSHTWPEEPLKPPKIVFSPNQLYRKGMVFWEMFRPYVTFLKEVDAISSWGRPRKR 303
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BLAST of mRNA_S-dermatodea_contig10694.477.1 vs. uniprot
Match: A0A6H5JRL3_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL3_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 3.690e-27
Identity = 47/76 (61.84%), Postives = 58/76 (76.32%), Query Frame = 1 
Query:    1 RRSHF-QVRLKIWFQFDEFAEMCSHVWPEEPLNPAATQFSPNQLYRKGMLLWEMARPYMDFMQDADCILCWKQPRR 225
            RR  F +VRL +W+Q+DEFAEMCSH WPEEPL P    FSPNQLYRKGM+ WEM +PY+ F+++ D I  W +PRR
Sbjct:  227 RRKRFGEVRLILWYQYDEFAEMCSHTWPEEPLKPPKIVFSPNQLYRKGMVFWEMFKPYVTFLKEVDAINSWGRPRR 302
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BLAST of mRNA_S-dermatodea_contig10694.477.1 vs. uniprot
Match: D7G4V0_ECTSI (Protein kinase C, beta 1, like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4V0_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.110e-18
Identity = 39/74 (52.70%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:    1 RRSHF-QVRLKIWFQFDEFAEMCSHVWPEEPLNPAATQFSPNQLYRKGMLLWEMARPYMDFMQDADCILCWKQP 219
            RR  F +VRL++ F+F+EFAE CSH+WPEEP  PA   FSPN++Y   MLL ++A+PY+  MQ+A  I+ W  P
Sbjct:  248 RRKRFGEVRLQLRFEFNEFAETCSHLWPEEPPEPAEMTFSPNRVYYNAMLLRQLAQPYIGCMQEASAIVHWVHP 321
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BLAST of mRNA_S-dermatodea_contig10694.477.1 vs. uniprot
Match: A0A6H5JW30_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW30_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 2.700e-17
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:    1 RRSHF-QVRLKIWFQFDEFAEMCSHVWPEEPLNPAATQFSPNQLYRKGMLLWEMARPYMDFMQDADCILCWKQP 219
            RR  F +VRL++  +F+EFAE CSH+WPEEP  PA   FSPN++Y   MLL ++A+PY+  MQ A  I+ W  P
Sbjct:  279 RRKRFGEVRLQLRVEFNEFAETCSHLWPEEPPEPAEMTFSPNRVYYNAMLLRQLAQPYIGCMQGASAIVHWVHP 352
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10694.477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FL70_ECTSI4.620e-2862.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRL3_9PHAE3.690e-2761.84C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D7G4V0_ECTSI1.110e-1852.70Protein kinase C, beta 1, like n=1 Tax=Ectocarpus ... [more]
A0A6H5JW30_9PHAE2.700e-1751.35C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10694contigS-dermatodea_contig10694:562..2850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue2.4e-15
Seed eggNOG ortholog2880.D7G4V0
KEGG koko:K04868,ko:K15712,ko:K19728
KEGG TC8.A.16.2.2
KEGG Pathwayko04010,ko04260,ko04261,ko04921,ko05410,ko05412,ko05414,map04010,map04260,map04261,map04921,map05410,map05412,map05414
EggNOG free text desc.Protein kinase c
EggNOG OGsKOG0696@1,KOG0696@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_005280.1
EC2.3.2.27
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04040,ko04121,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924169.3046815-CDS-S-dermatodea_contig10694:561..6841622924169.3046815-CDS-S-dermatodea_contig10694:561..684Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10694 562..684 -
1694079065.1310165-CDS-S-dermatodea_contig10694:561..6841694079065.1310165-CDS-S-dermatodea_contig10694:561..684Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10694 562..684 -
1622924169.3156707-CDS-S-dermatodea_contig10694:2742..28501622924169.3156707-CDS-S-dermatodea_contig10694:2742..2850Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10694 2743..2850 -
1694079065.1519635-CDS-S-dermatodea_contig10694:2742..28501694079065.1519635-CDS-S-dermatodea_contig10694:2742..2850Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10694 2743..2850 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10694.477.1prot_S-dermatodea_contig10694.477.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10694 562..2850 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10694.477.1

>prot_S-dermatodea_contig10694.477.1 ID=prot_S-dermatodea_contig10694.477.1|Name=mRNA_S-dermatodea_contig10694.477.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=77bp
RRSHFQVRLKIWFQFDEFAEMCSHVWPEEPLNPAATQFSPNQLYRKGMLL
WEMARPYMDFMQDADCILCWKQPRRR*
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mRNA from alignment at S-dermatodea_contig10694:562..2850-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10694.477.1 ID=mRNA_S-dermatodea_contig10694.477.1|Name=mRNA_S-dermatodea_contig10694.477.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2289bp|location=Sequence derived from alignment at S-dermatodea_contig10694:562..2850- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGTCGATCTCACTTTCAGGTCCGGTTGAAGATATGGTTCCAGTTCGACGA
GTTTGCGGAGATGTGCAGCCATGTTTGGCCTGAAGAACCGCTTAACCCGG
CTGCGACGGTGAGCGTTTCGATTTTGTTTTGTGCGTGTGTGAGTTTTCTT
AGACACTAGTGGGTAACCACAGGCTACACGCCCGCGAATTTAAAAATCCT
GGTACTATTTTCGCCACTTGTTTGTAACGGCCCCCTTTGAAATCACAATC
AACTTTGGCTTCACAAACGTTTCACCGCTCAACTTCTTAATCGCTGCTAT
TTTCTGCAGAAGAATGAGCTCTAAATCGCTATTAAAAATACGTGCAAAGC
GCTATTAGTTAACAAATGGATTTTTCTGTGAGATGCGAAGGGTTCTAATT
GGTCTATTGGAATGTGGGTTTCGGACACCGGTAAGAATTTGTGGTTTAGG
CCCCAAGTTCCGGGGTAGACCCGCTCTGATTCCAAGAGTTTTGTGTCAAT
TCCTTCTTTGTACCGGTATGTACTACACAGACGGGTAATTCCGTTGGGTT
TTCTCAATCTCTCGATTTCTCATCCGACCACGAGCGGAATCAGCAACCAT
TGGTGGGGGCCGGTCGGTTGTAAGTGTGATAGCCAATCCAATCAAAACCA
ATCAATCAATCGATCGACCTCATTGGGAGTGATCAGTACGGTGATGACCG
ACATTCAGTGAAGTCAGTCGGTCAATACCACACTGTTACGGCTCCGTGTC
AACGCCGATTTTGGCTTGATATGGTACTTGATATGTACCAAGACATAATT
TCAACCTTGATATGATATGTCAAGAAACTTGATACCAGGTATATATCAAG
AAAACTTGATATATCAACTTTCACGGTACTTGATATCGATATGTATGATG
TGGAGGCGTCGGCAAGTCCGGGGTCCGGGATTTCGCCGTTTTGGGGTCGC
GGCGGGTGTTTCCGCTGTGCTGCTACCCGCTAGGGCTTCTTATCAAGAAA
ATAACTTGATATTATGTCATGATACTTGATGCGATACCCAATATCAATAT
CACGCAAGAGTTCCTGTATTAAGCTTTTAGGGGAGGCACAAGAGTTCCTG
TAGACCTTGTTTCCTGGTACTCATGTGCATGTTCTTTGTGCTTGTCTGTT
GTGTAGAGTACTTTCTCTTCGCGAACGATTTAATAAAAACAAACGAATAC
TCTTTGACTACCTACTTTGTATGCATAAGCTACCCAGCATTATTCATGCT
TTGTTGGTTATTTTTAGCAGCATGATTCTGTGGTTAAAAAACAACGAGGC
TTCCTTGCAACACCCTCCACCCTTAGTTCTCCCACGTCCCGAAGGGGACC
CTTGTAGTACATAAAAAGAAGGAATTGACATAAAGTTACTCTCGGAAACA
GAGGGGGGCATACCTCGGAATTTGGGCCTGATATATAGTACGCAGAAGGA
ATTTTCCGAGACTTTTGTGTCAATTTGGGCCTGATATACAAGTACTGTGT
ATACAGGTAATTCCTTTTTTGTTTTAAAGGTTCTCGATTTCTCATCTGAC
CATGAGCGGGATCGGCAAGCATTGGTGGGCCGGTCGGTTATAAGTATGGT
AGTCAACAAAAAATAAAATAAATGAATCAAATCAACGGAAGGAATATCAA
GAAACAACAGCTCGGAAACAGGAAGGACACACCTCGGAACTTGGGGTCTC
ACATAAAGTTACATAGTATAAGGCCTGTCTACGTTCTTGCGATTACTATG
ATCGTTTATTCCCCCCCGCTCGAAGGAGGGTGAAGACCGTGTCCATGTAG
TGGCGAAATGCCCGTTTTCTGAAAAGTATTGAAGTGTAAATGGCTGAGCT
GGGGAAAATTGAAGGCTGTGACAGAGAGACTTTTGAAGCATGTGGCAGCC
AGAAGAAGGCGGTAGCATACTGGCGGATAAGAAGTGGCCTGAGAAGGCGA
GAAGTGATGTAGACAGGATAGGAAATATTTTTTGCGCCAACTTTGGCAAA
GTAGGAAGGAACGCTTGGCCATGGGCGATCGATCCTGTGGGAACAATGCC
CCGTCCTCTCGAGGACGCGTGGTCGACGGTCTAACAGCTAAGGCATGTAA
GACATGAGTACGCCCTCCCCCCTCCCCCCCCCCTCCCCCCTCCTCCTTCC
TCCCTTTTGTTTTTAGCAATTCTCGCCGAACCAGCTGTACCGTAAGGGCA
TGCTCCTTTGGGAGATGGCTCGGCCGTACATGGACTTCATGCAAGACGCC
GATTGCATCCTTTGCTGGAAGCAACCTCGCCGAAGGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10694:562..2850-

>mRNA_S-dermatodea_contig10694.477.1 ID=mRNA_S-dermatodea_contig10694.477.1|Name=mRNA_S-dermatodea_contig10694.477.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at S-dermatodea_contig10694:562..2850- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGTCGATCTCACTTTCAGGTCCGGTTGAAGATATGGTTCCAGTTCGACGA
GTTTGCGGAGATGTGCAGCCATGTTTGGCCTGAAGAACCGCTTAACCCGG
CTGCGACGCGTCGATCTCACTTTCAGGTCCGGTTGAAGATATGGTTCCAG
TTCGACGAGTTTGCGGAGATGTGCAGCCATGTTTGGCCTGAAGAACCGCT
TAACCCGGCTGCGACGCAATTCTCGCCGAACCAGCTGTACCGTAAGGGCA
TGCTCCTTTGGGAGATGGCTCGGCCGTACATGGACTTCATGCAAGACGCC
GATTGCATCCTTTGCTGGAAGCAACCTCGCCGAAGGTAGCAATTCTCGCC
GAACCAGCTGTACCGTAAGGGCATGCTCCTTTGGGAGATGGCTCGGCCGT
ACATGGACTTCATGCAAGACGCCGATTGCATCCTTTGCTGGAAGCAACCT
CGCCGAAGGTAG
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