mRNA_S-dermatodea_contig10688.476.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10688.476.1
Unique NamemRNA_S-dermatodea_contig10688.476.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10688.476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10688contigS-dermatodea_contig10688:916..7162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size247
Cds size204
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10688.476.1prot_S-dermatodea_contig10688.476.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10688 958..7162 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924169.2408388-UTR-S-dermatodea_contig10688:915..9571622924169.2408388-UTR-S-dermatodea_contig10688:915..957Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10688 916..957 +
1694079065.0836463-UTR-S-dermatodea_contig10688:915..9571694079065.0836463-UTR-S-dermatodea_contig10688:915..957Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10688 916..957 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924169.2507312-CDS-S-dermatodea_contig10688:957..9631622924169.2507312-CDS-S-dermatodea_contig10688:957..963Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10688 958..963 +
1694079065.0922716-CDS-S-dermatodea_contig10688:957..9631694079065.0922716-CDS-S-dermatodea_contig10688:957..963Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10688 958..963 +
1622924169.2590299-CDS-S-dermatodea_contig10688:1321..14461622924169.2590299-CDS-S-dermatodea_contig10688:1321..1446Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10688 1322..1446 +
1694079065.101778-CDS-S-dermatodea_contig10688:1321..14461694079065.101778-CDS-S-dermatodea_contig10688:1321..1446Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10688 1322..1446 +
1622924169.2675655-CDS-S-dermatodea_contig10688:7089..71621622924169.2675655-CDS-S-dermatodea_contig10688:7089..7162Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10688 7090..7162 +
1694079065.1133828-CDS-S-dermatodea_contig10688:7089..71621694079065.1133828-CDS-S-dermatodea_contig10688:7089..7162Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10688 7090..7162 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10688.476.1

>prot_S-dermatodea_contig10688.476.1 ID=prot_S-dermatodea_contig10688.476.1|Name=mRNA_S-dermatodea_contig10688.476.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=68bp
MQRRGVGRGLAATKPAWMTNGSATAPVGGLQQQASNSSTSQSRGRGGSPE
SRSRDGRKRGRSNSSSGS
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mRNA from alignment at S-dermatodea_contig10688:916..7162+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10688.476.1 ID=mRNA_S-dermatodea_contig10688.476.1|Name=mRNA_S-dermatodea_contig10688.476.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6247bp|location=Sequence derived from alignment at S-dermatodea_contig10688:916..7162+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CACTGACAGCAGAGCCGGATCAGCAGCAAGAGAAGCACAGCGATGCAGGT
GAGGCTTGTAGTTGCCGTGTTCAGAATTTCTGCCCCATGCGGCTTGTTTG
TTCACATGTGCCACAGCAGCAGCAGTACTCCTTAAAATCTCTGCCAAAAA
CGACATTTGTTCCTGGGGCAGGCAGGGGGGCGGCAAGAGCGTGCCCGCCG
CCGCCGCCGCGCCCCGCTCGCTTGCGTCGCTACTACAAGTAGTCGCCTCC
TGCGGTATTGTATCCTTTTTAAGTTGCAAGCGCGCCCGGCCTAATGAGAT
AGAAACTACACCAAGCATCACATCGTGGACAGAGATTCAATCGAGTTTTC
TCTCGGCATGCATGGCAATGCCCGCCCACCCTCCCTCGCTTCGCTTCGCG
CTTTAGAGGAGAGGCGTCGGGCGTGGACTCGCGGCCACGAAGCCGGCATG
GATGACCAACGGATCAGCTACGGCGCCAGTTGGCGGCCTACAACAGCAAG
CCAGTAATAGCAGCACCAGCCAGAGCCGTGGGTGAGTAACCGGGCTAAGG
GGGAGTTGGGGGGGCGGGGTGGGCAGCGGGGCGCATTGCGGCTGGATTGG
AGGATCCCGAGGTTTGATTCTGTTGGCGCAGAGACAGATGGTGCGGAAGG
CATTGAGTCTTTGTTGGTGAAGAGGTCTATGCGAAAGTTCTGCGCGGTGG
GGGCTGGGAAATTCAATTGAAACACGAGTACAGGGTACGTACAAGTACTT
GTATTATTTTGTTGCTCCTCTCTTGGCCTCGTTCGTCGAGTTGTCATCAT
CCAGCTACAGCCATGGCAGCTACTAATACCTACTGGTACACTTGTAAGCT
TGGGATAAATCATGGATCATTCATATATAATGTAGTGGTAGGCGCAGCTT
TGCTTTCTTTTTCAAACTGTATGATATGATAAATACTCTATATTATTCCC
CATCGTGATCACGGGTCGGGCCGCGCACGGTCCCCCGAACATAGAACCAA
TGCATGGGTGAGCGAGGTGCATGGGTATCCATACCATAGCCTTGAGTGTT
CGGAAACGTCTGCACTCTGCCCGCGCCGACACGCCGACACCAACAACAAC
AGATTCGGCAGAGCCCCTGTGCCGGGAACGAGCACTGCCTGCTGTGCTGT
GCTTTGTTTACAGAAAGTAGTCTTAGAAAGTCTACGGCGCTGATGACGCT
CTTCTCCTTCGTGTTCATTATATCGGACAACATTTTTAGGCTCCGGGACA
GGTTCGTGGGGAGTTTAATTAGGCGGGGGAAGCTCGGCGAGACATATGTG
CGAAAGATTGCCCAATCATCCCACCAAAAGCAAGGATATCCCAATCCTTG
CGCGCATCTCCCAGGCAAAAGGTTCCACACTTGGTACTTGTACAAGTAAC
TGTTCCCAAGCCCCCCCGCAGCCAGAAAAACGAATTGGATGGGAGATACG
AGGCACTGGAAAATGTGCGCTGCCGGATGATCTGTGATGTGCTCTGTATG
ATACAGCAGTAACAGACTGTCTGAACATTAATATATTGTACTGGTACAAA
GTATGTAACATACGGCCACATATTTGGCCGTCCCACACAACAACAGACCG
CCTTGGGCAACCTTCCTTTGTTTCAGGGCAGTTCTTGACATACAGCTTCT
TCAGCCCCGTAGGGCCTTCTCTCTGAGATGCCTTGTGCCGAAAGCAAGAT
CATAGAGGCATTTTGCTCGGCGTGTCCTGAACACGAGTCCTCAGCAGTGC
TGTCCGTTCACCGTTGCTGTCAAAACGTTGTTTGGCGTATTCTCGGCAAT
TTTTCCAAAAACGTTTCACGCCGACCAGCACTGCTCCCGCCGCAAGACAA
TCCTCGGCATGCTGCGCTGCACACAGCATCTCAGACAGTAGGAGCCATGG
CCACCGAAGAGCCTGTATCAAGCTGAGGCCTCAAGCAAAAGTAATGCTGA
GCCTGCAGCAGTCTTGGGCGGTGTTCAAGAATTTTTTAGAAATGCGGTGC
AATGCTATGTCAAAATCAGCCTGTGATTGGTCCGTGCTATGTCAATTGCG
GCTTCTGGTTGGCCCGTATGTCGATTATTTCCCGCAGCCAACGACACTTG
CCTTCATTATTCATTATACAACTGGGAGTCAGTATGATACATAAAAATCG
CATCCTACCTGATGGTGTTTTTGGTGACATTTGTATACTTGTATCATACA
GCACCACTGTTGTTCCAGGAAGCTTGTACTGTTATGCAGAGTATAGGTGT
TATAATACAAGTACACTATAATATTAATACCAGTACATGTGAGTGATAGG
TTACTAGACTATGACGCATAAGGTCACTAGACTAGTCTATGACATGTCAT
GTCTTCGGACTATGAGACGTCACGACCTTTGGAGATAAGTAGGCCTGCGT
CCTGCGTCCAGGGCTGGGACCCAATCTCAGGGTGTCGCGTGTCTCCCCCT
GTCTCTCACAATATCCATCGACCTTGGCTGAACCTCGCGTTCGGCCCACA
CCCACAACGTGTGACCCGTCCCGAGACAAGCCCTAGCGAGCCCGAACCCA
GGGGGTCACCCCGACATACAGCAGAATATATATAATGAGATCTTAAAAGG
CGAGCCCGAATCTGGATGGTGAAGTGACTATAATAGTTAATATTAACTAC
CTGGTAGTAGATAGCCACGGCTACGCCCGTGAGGTGTGCGTGGTCGCTGA
TCTCTAAAATAAAGTTTTTTGGCGCTCAACGCAAACATCTAATTGTTTGG
CATCACTTTTTCCTATAGGATTCCGGCCTCACAGTAGTATCGTTATCTAA
AATCGCTATTAAAAATCGGCCACTAAAGATATTATATACAGTATAGCCCT
ATGTATTAATAACCCTGGATTTAGTCCGTTTTCACGCCGAATCTCGTCAG
TTCATGTATTAACTAATTTTAACAATATTAACACTTGTAGGGGTGTATCA
CGGTGGCTCGTGCGCACACGCAAGTGCACCGAGTGCAACGCCAAGTGCAC
GATGCATGCAAGTTCATAATGAATCATGACTTTTACAGATCGGGTATTGT
ACAATATTTGTATTTGTACTTGTAAGGCGAGGAGTAGCCACTGTTTGATC
ACGGTTCGCCCGAAAGCAGGCCTAGACATGGTCTAAGAACCCCAGCTGTT
GCGTCTGTCCCTGGTCCACGTATATATATATATATATATATATATACTTC
GAAGTATATACATATATTGTACTTACATGTGTTAATAGGCTACATATGAT
ACGATTGCCCGGCCCTTACTTAGACACGCATCCGAATCCTGCCTGAATCC
CGTTTTGTGATGACGAGATATCCACAACCCCATCTCTCCGAACAGTATCA
TACTTTCCCTACATTTCTTTGGCGCGTTCGGTTCTCTTCAATCCCGCTGC
CCTCTCGCGACTCCTCGGACCATCTCCTGTTGCGCGATCTTATGTTGGCA
GTACAGCAGTATATGATCTCCCATAATATATTTGTATTAAACTTGCAGAG
CCACAGCAGTATCAAACAGACTACAGACAGTAGTAAAGGGTACTTGTACA
AGCGTCATGTATGATATGGCCCCAGGTCGTGTTTAAATTTTAGGAGATTG
TGAACCCGACATGTGAACCACAGCGAGAGAGCGGGGGGGAGAATATGGGT
GGTCTCGATTCCAGCAGAAAGCGGTCCCGCAGCAGTTATCCTTTTTAATT
AATACAAGAGTCAACCATTTTTTACACTACAATAAAGCGTAGGCATACTA
AATTGCATACGATTTCACATTTACAAACTGAAGCCGGATTGGGTACACTA
ACTCCGATACGATTTACATTTTTAAATGCATAGCGATACGCCTGCNNNNN
NNNNNTAACCCGCACATCGTCCTGCCAACGCACACCTCACGGGCGACAGC
CGTGGCTTGCAACTAGTTAATATTAATAGTACCGCGGCGTGTGAGACAGT
GTCGTGCTGAGTTTATCCACATTCAACGGTTACAGAGGTCCGTACAGAGG
GCAAGTGTATGACGACACTCACGACTCGGGCTCTGGCACTAGCACTAGCA
AAAAATACCTATAATAGTACTGTAGTACAGTAGTACAGTAGTAATAATAT
CACAGTATGTGGAGGACAGGGTCTGGGGCCTGGTGGCCACGTAACACAGA
CTACATACATGTCTTCTCTTAGACAGCATACACAATACCAGGGATCTCTT
GTGTAGGCTCCATCCGTGGAATATCACCCATAGGCAGGCAGGCCAAGCCA
CTGCCTTATAAGATACTGTAGTTGTACATGGTTTTAGTACGACAACCATC
TGCCGGCGGTATGGCCTCGGTATTGCGGAACTCCATCAGACCCGCGTATC
GCCACGTAGCCACCGTGGGTACGGGTACCCGGAGTGTATGAAAATTAAAA
TTTACCCTGGTGTGTAGTAAAGCTTTACCCTGGTATGCAGTAGCCCTCGG
TTTCCTGGTCGCTGCAGCTATCATACGGGGACCACTTTGTCCCCAGAGTA
AACAACACAAGCACAGGTTGGGGTTGGACCGAGCACGAATCTGGCCAGAC
GATAGGTCTCTACATGTCACTGGTGTTTTTTGTTTTGTTTTTTCCCATTT
TTCGAATTCTGGAACCAAATATCACAGCAAACGACAAAACCAACTGTGGA
ACAGCACTGCACAACACTGCACACAATGTTCCTTAGCGAAAACGAGAAAT
TGTGCAGAAGCTCCAAAGCTGCCGGCAAACCTAAGTTCAGCACACTACGC
CGCTGTCAGCACACTACGCCGCTGTTTGTTCACCCCGGAGCTCTCCCAAA
GTTTGAGCACCAACGGTCATCCATAGGCCAGAGGCAAATCGATCGAAGTC
TAACGAGCTCGGGCTTTCCCAAGGTTTTTTTTTTAAGGAGCGATCCAGGC
AGCCTTGGCCACCGCGAGGCCGGTTTCATTTTTTTGTGGCGAACCAAAAT
TCTGCACAATCCGAACTCCTCAAGTGGTAGGGCATTGCCGAAGGTCCCGT
CTCAGTCCGTGCTCCACCCAAAGCGGAGGCAAAAGCGATTTCTCAGAGAT
GAAAACACTGGAAAACGGGTGGAAAGCGAAAAAGTAAAACGCACAAGCCT
TCGATTATCGTTGTTATCTTCGGTCATAGTCGGCAAAAAAAAACACGTGT
CATATGGAAAGAGTGGGAGAACCCGTAACGCGAACACGGCTCAGTAGGAA
CGATCCGGGAAACGCGAGCATGGCTATATACTAGGATCGGTCTGAGAACA
ACATCGGCTTTCTAAGGAACGACCCTCGGATGGCAAACGCGCAGGCGGCC
TCTGACACTATTCCGACAGAACGACAGGATATCTCGATCTCTATACTGTC
CAGTATTATAAGTAATTTACTGTCCAATGCTCTATAATAGTAAGTGGTGC
GAATAATCCGAAAGCCTGGCACCCACACAAAGATGCACGGCAGGGCTTTC
GGGGACACAGCAGTGAGAAGCACGCGGAGGAATGATCCCAGGCGTTTTGC
TATGCATAGCGTCACCGTACCAGGGTTCATGCGGGCCTCCTCCCAGCCGC
GGCCTTAAAGCGGCACTACACCTGACAGGCGGCACAGACGTAGGAAGCTT
TAGATTCACAAACCCAGCTCTACACACAGGAGTACATGCGATGCGTAGAA
TTTTCAACAGTTTTACTTTCGCTGGGTCCGCTCCGTAGCAACGCCCGAGG
GCGCCGCATTTCAATCCGATCACATCGAACACATCGCGTGAGTTCCGGGT
GCACCCCCCTGCGTGCCATGACCCTTGAGGGTGGGCACCGGTGGAGCTCA
CGATATCCACTCTCGTTGGCCTCTAGGGGCTGCGTTCCACTGCTGCTGGG
GCCATGCGGCGTCAGCCGCTATTTTTGTTTAACGTAAACGTAAAGGACCG
GGGTTCGAATCCCGGCAGAGTGATATTTATTTATTTTCTCTACCTCCGCC
GCGGAAAGCGCGAGAGCGCGNNNNNNNNNNAACCGGGGAGAGATGGGATG
ATCCCTTGTGACCACAGATGGACCTCGGAAAAGAAAGTCTATAATATGTG
TGCCAGAGAGAGAGAGAGTAAAGCTCTAAATAGTATCTAGCTTAGGGAAG
GATAAAAACGAAACAGCAAAATAACGCCTTCACACAACGCGTGACACCGA
CGAAACGCCTCTACACTCTGGCAGGCGCGGAGGAAGCCCTGAGAGTCGGA
GCCGCGATGGCCGCAAGCGCGGGCGCTCGAACAGCAGCAGCGGGAGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10688:916..7162+

>mRNA_S-dermatodea_contig10688.476.1 ID=mRNA_S-dermatodea_contig10688.476.1|Name=mRNA_S-dermatodea_contig10688.476.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at S-dermatodea_contig10688:916..7162+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAGATGCAGAGGAGAGGCGTCGGGCGTGGACTCGCGGCCACGAAGCC
GGCATGGATGACCAACGGATCAGCTACGGCGCCAGTTGGCGGCCTACAAC
AGCAAGCCAGTAATAGCAGCACCAGCCAGAGCCGTGGAGGAGAGGCGTCG
GGCGTGGACTCGCGGCCACGAAGCCGGCATGGATGACCAACGGATCAGCT
ACGGCGCCAGTTGGCGGCCTACAACAGCAAGCCAGTAATAGCAGCACCAG
CCAGAGCCGTGGGCGCGGAGGAAGCCCTGAGAGTCGGAGCCGCGATGGCC
GCAAGCGCGGGCGCTCGAACAGCAGCAGCGGGAGCGCGCGGAGGAAGCCC
TGAGAGTCGGAGCCGCGATGGCCGCAAGCGCGGGCGCTCGAACAGCAGCA
GCGGGAGC
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