mRNA_S-dermatodea_contig10687.475.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10687.475.1
Unique NamemRNA_S-dermatodea_contig10687.475.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10687.475.1 vs. uniprot
Match: A0A6H5KW63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW63_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 6.380e-55
Identity = 103/190 (54.21%), Postives = 128/190 (67.37%), Query Frame = 1 
Query:   34 WSCPRRDWSESRVAPRTRATIPPSDDMRRQWLFESETIVNVEHSLLFCAPPNTGSLQFRMLAKRMQGVDHWAVSNDRSMLFDPVASELLLLDIDDAELMKAVYQENTSGWIKIGVVRDPVTRLLSAYLDLVQAARSGYVPK-------STASNHDRRRLGLLDGERYWLN------VISRGRRGELSEEG 564
            W+CP     E  +APRT A +PP  +  R+WL ESETIV +E SLLFCA PNTGSLQFRMLAKRMQG+ HW+ SN+RS+LFD  ASEL LLD  D +LMK +Y EN SGWIKI VVRDPVTRLLS+YLDLV   R+  + +       + +S+H+RR L      ++W        V+ RGR G + E+G
Sbjct:    7 WTCPETRLEEEMLAPRTSAQLPPLTNETREWLAESETIVVMEPSLLFCAAPNTGSLQFRMLAKRMQGIPHWSTSNNRSLLFDREASELELLDTTDGQLMKEIYSENGSGWIKIAVVRDPVTRLLSSYLDLVDTWRARLILQWQPPANDTQSSDHNRRWLW-----QWWPETEPTDEVLQRGRGGGIKEDG 191
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BLAST of mRNA_S-dermatodea_contig10687.475.1 vs. uniprot
Match: D8LQ23_ECTSI (Exostosin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ23_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 5.460e-50
Identity = 95/142 (66.90%), Postives = 104/142 (73.24%), Query Frame = 1 
Query:   34 WSCPRRD--WSESRVAPRTRATIPPSDDMRRQWLFESETIVNVEHSLLFCAPPNTGSLQFRMLAKRMQGVDHWAVSNDRSMLFDPVASELLLLDIDDAELMKAVYQENTSGWIKIGVVRDPVTRLLSAYLDLVQAARSGYVP 453
            W+C R D    E   APRT A +PP     RQWL E+ETIVN E SLLFCAPPNTGSLQFRMLAKRMQG+ HWAVSNDRS++FD  AS L LLD  D  LM+ +YQEN SGWIKIG+VRDPVTRLLSAYLDL    R    P
Sbjct:  533 WTCNRYDPKGEEVDAAPRTTAKLPPPAGATRQWLAETETIVNEERSLLFCAPPNTGSLQFRMLAKRMQGLPHWAVSNDRSLVFDREASGLELLDATDGHLMEEIYQENGSGWIKIGLVRDPVTRLLSAYLDLADRWREALSP 674
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BLAST of mRNA_S-dermatodea_contig10687.475.1 vs. uniprot
Match: A0A6H5JMN7_9PHAE (Exostosin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMN7_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 1.300e-43
Identity = 84/131 (64.12%), Postives = 99/131 (75.57%), Query Frame = 1 
Query:  118 RQWLFESETIVNVEHSLLFCAPPNTGSLQFRMLAKRMQGVDHWAVSNDRSMLFDPVASELLLLDIDDAELMKAVYQENTSGWIKIGVVRDPVTRLLSAYLDLVQAARSGYV-----PKSTASNHDRRRLGL 495
            R+WL ESETIV +E SLLFCA PNTGSLQFRMLAKRMQG+ HW VSN+RS+LFD  ASEL L+D  D + MK +Y +N SGWIKI VVRDPVTRLLS+YLDLV   R+G +     P + A    +R+LGL
Sbjct:  303 REWLTESETIVVMERSLLFCAAPNTGSLQFRMLAKRMQGIPHWGVSNNRSLLFDREASELTLVDTTDGQSMKEIYSDNGSGWIKIAVVRDPVTRLLSSYLDLVDKWRAGLILHQQPPHNDAQVRRQRQLGL 433
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BLAST of mRNA_S-dermatodea_contig10687.475.1 vs. uniprot
Match: A0A6H5L741_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L741_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.060e-21
Identity = 51/95 (53.68%), Postives = 67/95 (70.53%), Query Frame = 1 
Query:  229 QGVDHWAVSNDRSMLFDPVASELLLLDIDDAELMKAVYQENTSGWIKIGVVRDPVTRLLSAYLDLVQAARSGYVPKSTASNHD-----RRRLGLL 498
            +G+ HW VSN+RS+LFD  ASE+ LLD  D + MK ++ +N SGWIKI VVRDPVTRLLS+YLDLV   R+G +    +S +D     +R+LGL 
Sbjct:   27 KGIPHWWVSNNRSLLFDREASEMTLLDTTDGQSMKEIFSDNGSGWIKIAVVRDPVTRLLSSYLDLVDTWRAGLILHQQSSINDPQVRRQRQLGLF 121
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10687.475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KW63_9PHAE6.380e-5554.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQ23_ECTSI5.460e-5066.90Exostosin domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JMN7_9PHAE1.300e-4364.12Exostosin domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L741_9PHAE1.060e-2153.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10687contigS-dermatodea_contig10687:796..3593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.5
Seed ortholog evalue5.4e-44
Seed eggNOG ortholog2880.D8LQ23
EggNOG free text desc.macromolecule glycosylation
EggNOG OGsKOG1021@1,KOG1021@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionExostosin-like
Ec32 orthologEc-15_001230.1
Exons3
Model size664
Cds size660
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10687.475.1prot_S-dermatodea_contig10687.475.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10687 796..3591 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924169.1833878-CDS-S-dermatodea_contig10687:795..9111622924169.1833878-CDS-S-dermatodea_contig10687:795..911Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10687 796..911 +
1694079065.0548644-CDS-S-dermatodea_contig10687:795..9111694079065.0548644-CDS-S-dermatodea_contig10687:795..911Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10687 796..911 +
1622924169.1960049-CDS-S-dermatodea_contig10687:2439..25541622924169.1960049-CDS-S-dermatodea_contig10687:2439..2554Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10687 2440..2554 +
1694079065.0674245-CDS-S-dermatodea_contig10687:2439..25541694079065.0674245-CDS-S-dermatodea_contig10687:2439..2554Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10687 2440..2554 +
1622924169.2093844-CDS-S-dermatodea_contig10687:3162..35911622924169.2093844-CDS-S-dermatodea_contig10687:3162..3591Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10687 3163..3591 +
1694079065.0757718-CDS-S-dermatodea_contig10687:3162..35911694079065.0757718-CDS-S-dermatodea_contig10687:3162..3591Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10687 3163..3591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10687.475.1

>prot_S-dermatodea_contig10687.475.1 ID=prot_S-dermatodea_contig10687.475.1|Name=mRNA_S-dermatodea_contig10687.475.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=220bp
SQAQAIGPDRTWSCPRRDWSESRVAPRTRATIPPSDDMRRQWLFESETIV
NVEHSLLFCAPPNTGSLQFRMLAKRMQGVDHWAVSNDRSMLFDPVASELL
LLDIDDAELMKAVYQENTSGWIKIGVVRDPVTRLLSAYLDLVQAARSGYV
PKSTASNHDRRRLGLLDGERYWLNVISRGRRGELSEEGRAPEELHEEEGN
ARGLLDGQQPEAVGARFVEE
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mRNA from alignment at S-dermatodea_contig10687:796..3593+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10687.475.1 ID=mRNA_S-dermatodea_contig10687.475.1|Name=mRNA_S-dermatodea_contig10687.475.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2798bp|location=Sequence derived from alignment at S-dermatodea_contig10687:796..3593+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGCAAGCGCAAGCGATCGGGCCCGACAGAACGTGGAGCTGCCCCCGCAG
GGACTGGTCAGAGAGTAGGGTCGCTCCACGAACGAGGGCGACCATACCGC
CTTCCGACGACATGAGGTGGGGTGTGTGCAGCACTTACGATTGACGCACA
TCGTACCGAAACGGGCACAGATCACGCTTCCCAACAATACCGGAACGGAG
CGGTATGCCGATTACTCGCCGGCCAGGTTGCGTTTCACTAGGATTATACC
AGCTGCTATCATAGGTGTCATCGTTGCGTTTGCGACGCCAAAACGATATG
CCACGGGTTGATTGGAGATACCGGGTAACCAGACGTTGCACATTCAGTAG
GTATAACTGGAGTACCGCAACGGGACTTTGACCTCCGCACGAACGCAAAG
CGCCGCACGCACAAAAAGTACACGACGGCATATGTGTGATACACCCATAC
TATGGTCTGCTATTCTGCTCACGAGCACTTCTGGCGGAGTACCAATCATA
AATTAATGGCTGCTCTAGGACTTGCCAACAATGCTTTGTTCTGCAGGTGT
CCTGTAAGATGTGACGTGGTTCACCCCTTTGAGGAGAGACAAGACTCTTC
GGCCGAGGTCTCTGAACCCACAGGACGCACTGTTAAACTCCCCCATGCCT
TACAAATAGCAGTGTTACACGTTCGTGCCACAAGAAGCAACCCAACCTGG
ACCAACCCCACCTCGAACCTCAAAGGCAGGGGGGTTATAGGTCTTAGTTT
AACAAGGGGTGTGGGGGGTGAATTTCGGGGGTAGTTGGGAGGGGGGGGGT
CATGTTTTGAATCTACGGAGGGGACTATATACTGGAAATATGAATTTTGC
ATGCGCGAGAGTATCGTCCAGTTTAATTTCATGGCTCGGAAACCGTTCCG
AGAAACGCCTGGAGAGTGCTGCGAGGATTGGCCCTGAATACATTTTTGGA
GAGTTTTCATATACACCATGTACGTTTTTGGAGGAAGGGATGTGTTGTGT
TTTTCAGAACCCCCCCTCACCCATCCCCTCTTGCCCCGCATTCCCGAGCG
GACAAAATGTGGTTACCCGAATGAACGTGTGTCTCGATTTTCTAAGGAAA
CTGGCGAGTGTCCGCCGGAGAAGGTGTTGAGAGTGGGGGGTGACTAGGAT
TGCAACAGAAGCACTGGCGGGGACCCCGACTGGCTTGTGTGTGTGTACGC
GCGGTGATAGCAGTATACATTTTTAGAGGTTACATGGAGTGATTGCAACG
CTAGCTAACGAAGAAGCTTGAATTGATGGTGTCTTGTCACCGCAAAGGTT
GAGATGCGTGGGTTTTTCATTGAGTCTGACCAAGTCTAGGTATGCAACGC
TAGCCGTGCTTTTGTTTTGTTTGTCCCGGGTTGTTATACATCTGCACAAA
GCCTTCATCAAGCGATTTGTCCGGAAACGTTGTCCAGCACTTTTCGCTTC
TCGTTGTTCCCCCTCCCTGGCAACATCGTAGCGTGCCAACCGTAAATGAA
GAAACCAGTGCTGTTCGCCTCGCTCTCTATTTTTTCCGCATGCTTAGGTT
TCGAACGAAGGGCAAGGCTTCAGACAACCCCCCGCTCCCCCTCGCCCGCC
GTTTCTTCCCTGGTTCTGGAATTCGCATGTGCTTGTTGGAGCAGGAGGCA
GTGGCTGTTCGAATCAGAGACTATTGTGAACGTCGAGCACTCTCTTTTGT
TCTGCGCACCACCGAACACCGGCTCGCTGCAGTTTAGGATGCTCGCGAAG
CGCATGCAGGTAGGCAGATGCGATAACGTACCCTCACCGCCAAGGCCGGT
GCAACCTCTGCGAATACTTACTGCACTAGCCACTATTTAGAGGAATCTGA
ACGGTGTGAACGCCCAACGAGTGATGGAGCGCAACGTGCACAAGGCTCGC
GCGAGGCTTGAGCTATTGCAAGGATCGGTTTGCTTGGATAGGGTGAAGGA
AAGATCAGGATACCTTTTTCGTTTTAGAACCCGGCTACTATTAATCGCTT
CGGATATTGTACAACCGTAGCCGCCTTCTGGATTCCCGACTTTCGGCTTG
CTCACACGCCTAGGTCCACCACGTACAATCAGGAGTCCTTCGCACCGTAG
AAAAAGCATTCCGCAGCCGTTCAAAGGCATGTGATTGGTCCCCCAAGCCC
CCGTGCGGGAGGCCAAAGCCACCTCGGTAACTGTAGCGCTAGCACTCGCA
CGCTCGCGTATCTGCCAAGCTCGGCGAACAGAACGTTAGGCTCAGCTCTG
GGCGTGATTAACTTGCACCATCTTTCCCATGTAGGTTTTGTACCTCAGCA
CCCCCCCTCCCCGTTCGCCTCGAAACTCGCGCCCGGCGCACGTGATGACG
CTACTCTAAACGACAAGGGGGTGGACCACTGGGCGGTGTCAAACGACCGG
TCTATGCTGTTCGACCCGGTGGCCTCGGAGCTGCTCCTCCTGGACATCGA
CGACGCCGAGCTGATGAAAGCGGTCTATCAGGAGAACACCAGCGGCTGGA
TCAAGATAGGAGTCGTGCGCGACCCCGTGACGCGGCTCCTCTCTGCTTAC
CTGGACCTGGTGCAAGCCGCGCGGTCGGGATATGTGCCGAAGTCGACCGC
CTCCAACCACGATCGAAGACGGCTCGGGTTGCTCGACGGAGAGCGATATT
GGCTTAACGTCATCTCGAGGGGACGCCGAGGGGAGTTGAGCGAGGAAGGT
CGGGCCCCGGAGGAGTTGCATGAAGAGGAGGGCAACGCACGAGGCTTGCT
CGACGGGCAGCAGCCCGAGGCCGTCGGGGCACGCTTCGTGGAAGAGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10687:796..3593+

>mRNA_S-dermatodea_contig10687.475.1 ID=mRNA_S-dermatodea_contig10687.475.1|Name=mRNA_S-dermatodea_contig10687.475.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1320bp|location=Sequence derived from alignment at S-dermatodea_contig10687:796..3593+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGCAAGCGCAAGCGATCGGGCCCGACAGAACGTGGAGCTGCCCCCGCAG
GGACTGGTCAGAGAGTAGGGTCGCTCCACGAACGAGGGCGACCATACCGC
CTTCCGACGACATGAGTCGCAAGCGCAAGCGATCGGGCCCGACAGAACGT
GGAGCTGCCCCCGCAGGGACTGGTCAGAGAGTAGGGTCGCTCCACGAACG
AGGGCGACCATACCGCCTTCCGACGACATGAGGAGGCAGTGGCTGTTCGA
ATCAGAGACTATTGTGAACGTCGAGCACTCTCTTTTGTTCTGCGCACCAC
CGAACACCGGCTCGCTGCAGTTTAGGATGCTCGCGAAGCGCATGCAGGAG
GCAGTGGCTGTTCGAATCAGAGACTATTGTGAACGTCGAGCACTCTCTTT
TGTTCTGCGCACCACCGAACACCGGCTCGCTGCAGTTTAGGATGCTCGCG
AAGCGCATGCAGGGGGTGGACCACTGGGCGGTGTCAAACGACCGGTCTAT
GCTGTTCGACCCGGTGGCCTCGGAGCTGCTCCTCCTGGACATCGACGACG
CCGAGCTGATGAAAGCGGTCTATCAGGAGAACACCAGCGGCTGGATCAAG
ATAGGAGTCGTGCGCGACCCCGTGACGCGGCTCCTCTCTGCTTACCTGGA
CCTGGTGCAAGCCGCGCGGTCGGGATATGTGCCGAAGTCGACCGCCTCCA
ACCACGATCGAAGACGGCTCGGGTTGCTCGACGGAGAGCGATATTGGCTT
AACGTCATCTCGAGGGGACGCCGAGGGGAGTTGAGCGAGGAAGGTCGGGC
CCCGGAGGAGTTGCATGAAGAGGAGGGCAACGCACGAGGCTTGCTCGACG
GGCAGCAGCCCGAGGCCGTCGGGGCACGCTTCGTGGAAGAGGGGGTGGAC
CACTGGGCGGTGTCAAACGACCGGTCTATGCTGTTCGACCCGGTGGCCTC
GGAGCTGCTCCTCCTGGACATCGACGACGCCGAGCTGATGAAAGCGGTCT
ATCAGGAGAACACCAGCGGCTGGATCAAGATAGGAGTCGTGCGCGACCCC
GTGACGCGGCTCCTCTCTGCTTACCTGGACCTGGTGCAAGCCGCGCGGTC
GGGATATGTGCCGAAGTCGACCGCCTCCAACCACGATCGAAGACGGCTCG
GGTTGCTCGACGGAGAGCGATATTGGCTTAACGTCATCTCGAGGGGACGC
CGAGGGGAGTTGAGCGAGGAAGGTCGGGCCCCGGAGGAGTTGCATGAAGA
GGAGGGCAACGCACGAGGCTTGCTCGACGGGCAGCAGCCCGAGGCCGTCG
GGGCACGCTTCGTGGAAGAG
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