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Homology
BLAST of mRNA_S-dermatodea_contig10680.473.1 vs. uniprot
Match: D8LL68_ECTSI (Rab geranylgeranyl transferase component A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL68_ECTSI) HSP 1 Score: 288 bits (736), Expect = 7.900e-94 Identity = 152/276 (55.07%), Postives = 193/276 (69.93%), Query Frame = 1
Query: 19 ARFEDDTDSFMLRRREFCFPGIPPIVLRQEFVSVDGTGGAVWRSSIQFATFVCGEEGKRCLPLAGRSVLEVSSGLGLGAIAAWHLGASPVVATDVDEENGPMALLSYNAVANCSRRLASVKNHG---TSAGGERDGEESCLPLTDIEVDKADGRDTSWAKGDMKQPLH---VRALRWGSSSQLADAMTTFEGFGPDVVLACDVIFDESLLPDLSDTLAGACVLKTREGKRPTLCMSHQRRNRGREGPFFANLSTRLGGGA-WEEVHREDDLSVFIF 825
A FE DT+SFMLRRR F FPG+PP+VL Q+FVSV+GTGGAVWR SI+F+ FVC EEG+RCLPLAG+SVLE+SSGLGLGAI +W+LGASPVVATD+ ++GPM LL+ N NC R + TS R GE T + A+ T V++LRWG +QLADA+ F+GFGPDV+LACDV+FD++LLP L +TLA A TR G RP+LC+SHQ+RNR RE FFA+L+ R+GGG + +H+++DLSVF+F
Sbjct: 20 ACFERDTESFMLRRRRFMFPGLPPVVLNQDFVSVEGTGGAVWRPSIEFSEFVCSEEGRRCLPLAGKSVLEISSGLGLGAIVSWNLGASPVVATDLGSKDGPMTLLARNVSENCGPRAVATPQPSPGRTSRDHSRGGEAG----TSAKGRSAEDEGTPXXXXXXXXXXXXXSVQSLRWGDKAQLADALKKFDGFGPDVLLACDVVFDDALLPPLLETLAEAACRTTRGGGRPSLCVSHQKRNRRREDNFFASLAKRIGGGGQFRMLHQQNDLSVFVF 291
BLAST of mRNA_S-dermatodea_contig10680.473.1 vs. uniprot
Match: A0A835YQC3_9STRA (Rab geranylgeranyl transferase component A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQC3_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 7.610e-20 Identity = 52/112 (46.43%), Postives = 71/112 (63.39%), Query Frame = 1
Query: 28 EDDTDSFMLRRREFCFPGIP-PIVLRQEFVSVDGTGGAVWRSSIQFATFVCGEEGKRCLPLAGRSVLEVSSGLGLGAIAAWHLGASPVVATDVDEE-NGPMALLSYNAVANC 357
+D+ R+R F PGI P+ + Q+F+ ++GTGG VWR+S+ A + C +AG VLE+ +GLGL AIAAWHLGA VVATD+D + N +ALL+ N ANC
Sbjct: 32 DDEVAELTARQRTFILPGIERPLTIIQDFMGIEGTGGTVWRASVMLAEYCCTHLKDA---MAGAPVLEIGAGLGLVAIAAWHLGALQVVATDIDHDGNRLLALLAKNISANC 140
BLAST of mRNA_S-dermatodea_contig10680.473.1 vs. uniprot
Match: A0A6A5T7B5_9PLEO (Uncharacterized protein n=1 Tax=Byssothecium circinans TaxID=147558 RepID=A0A6A5T7B5_9PLEO) HSP 1 Score: 58.5 bits (140), Expect = 2.430e-6 Identity = 52/198 (26.26%), Postives = 82/198 (41.41%), Query Frame = 1
Query: 127 TGGAVWRSSIQFATFVCGEEGKRCLPLAGRSVLEVSSGLGLGAIAAWHLGAS--PVVATDVDEENGPMALLSYNAVANCSRRLASVKNHGTSAGGERDGEESCLPLTDIEVDKADGRDTSWAKGDMKQPLHVRALRWGSSSQLADAMTTFEGFGPDVVLACDVIFDESLLPDLSDTLAGACVLKTREGKRPTLCMSHQ 714
TG +W+ + FA ++ E + + + G G+ I A LG VATD D + LL N + N R K+ + +S + +E+D W S SQL + +G G D+V+ACD I++ESL+ L+ T A C L+ E ++PT+C+ Q
Sbjct: 64 TGAVLWKVTPLFAEWIASENFLSKTGFLRQDSIAIELGTGVSGIVALTLGPKIKHYVATDQDYV---IRLLKQNIIGNLPTRSTKQKSRKKPSNTST---QSTPNIETLELD--------WEAD--------------SVSQLPSLLGVNDGEGVDLVIACDCIYNESLIEPLNTTCAQICNLRASEQRKPTICLVAQ 233
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 67.8 |
| Seed ortholog evalue | 9.3e-09 |
| Seed eggNOG ortholog | 5671.XP_001464420.1 |
| Preferred name | EFM7 |
| KEGG ko | ko:K01530,ko:K03377,ko:K11450,ko:K17255,ko:K17878 |
| KEGG Pathway | ko04714,map04714 |
| GOs | GO:0000183,GO:0000922,GO:0001505,GO:0001568,GO:0001944,GO:0003008,GO:0003674,GO:0003824,GO:0004659,GO:0004661,GO:0004663,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005818,GO:0005819,GO:0005829,GO:0005856,GO:0005968,GO:0006325,GO:0006342,GO:0006355,GO:0006464,GO:0006479,GO:0006480,GO:0006605,GO:0006612,GO:0006766,GO:0006767,GO:0006769,GO:0006807,GO:0006810,GO:0006836,GO:0006886,GO:0006996,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007600,GO:0007601,GO:0008021,GO:0008104,GO:0008112,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008318,GO:0008757,GO:0009820,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010629,GO:0010941,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016278,GO:0016279,GO:0016458,GO:0016740,GO:0016741,GO:0016765,GO:0017016,GO:0017137,GO:0017144,GO:0018013,GO:0018022,GO:0018027,GO:0018193,GO:0018201,GO:0018205,GO:0018342,GO:0018344,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0022607,GO:0023052,GO:0023061,GO:0030133,GO:0031267,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031365,GO:0031399,GO:0031401,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032259,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032940,GO:0032991,GO:0033036,GO:0034613,GO:0034641,GO:0036211,GO:0040029,GO:0042886,GO:0042981,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043603,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044456,GO:0044464,GO:0044877,GO:0045184,GO:0045202,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0046903,GO:0046907,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050877,GO:0050953,GO:0051020,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051186,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051276,GO:0051641,GO:0051649,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070382,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071885,GO:0072358,GO:0072359,GO:0072524,GO:0072657,GO:0080090,GO:0090150,GO:0097354,GO:0097458,GO:0097708,GO:0098793,GO:0098916,GO:0099080,GO:0099503,GO:0099536,GO:0099537,GO:0099643,GO:0140096,GO:1901360,GO:1901564,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:2000112,GO:2000113,GO:2000539,GO:2000541,GO:2001141 |
| EggNOG free text desc. | Rab GDP-dissociation inhibitor activity |
| EggNOG OGs | 3XSA9@5653,COG3897@1,COG5044@1,KOG2920@2759,KOG4405@2759 |
| EC | 2.1.1.1,2.3.1.45,3.6.3.1 |
| COG Functional cat. | O |
| Best tax level | Kinetoplastida |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko03036,ko04147 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 843 |
| Cds size | 843 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10680.473.1 >prot_S-dermatodea_contig10680.473.1 ID=prot_S-dermatodea_contig10680.473.1|Name=mRNA_S-dermatodea_contig10680.473.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=281bp
EEGDEQARFEDDTDSFMLRRREFCFPGIPPIVLRQEFVSVDGTGGAVWRS
SIQFATFVCGEEGKRCLPLAGRSVLEVSSGLGLGAIAAWHLGASPVVATD
VDEENGPMALLSYNAVANCSRRLASVKNHGTSAGGERDGEESCLPLTDIE
VDKADGRDTSWAKGDMKQPLHVRALRWGSSSQLADAMTTFEGFGPDVVLA
CDVIFDESLLPDLSDTLAGACVLKTREGKRPTLCMSHQRRNRGREGPFFA
NLSTRLGGGAWEEVHREDDLSVFIFRGAVA* back to topmRNA from alignment at S-dermatodea_contig10680:3529..5875- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig10680.473.1 ID=mRNA_S-dermatodea_contig10680.473.1|Name=mRNA_S-dermatodea_contig10680.473.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2347bp|location=Sequence derived from alignment at S-dermatodea_contig10680:3529..5875- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGGAGGGCGACGAGCAGGCGCGATTTGAGGACGATACGGACAGCTTCAT
GCTGAGGAGGAGAGAGTTTTGCTTCCCGGGCATCCCACCAAGTGCGTGGC
ACCACTTTTTCGACAGAAGCACATACTTCGAAGTATGATATGGCTGTGTG
GCTTCACGGTTGACGTGGATGCGCTTGGTAGTTGGGCGCTGCGACTCGGC
ATTCGTCGCAAATCTTGCCAAAGTGTGGGCACAGCCGCTGTATATAATGA
TATCCTCTTTCTGAAGTGTGAGTCGCCAACAGTTGTTCGGTATGATACTT
TAGTGGTAGGCTTAGTCACTGCAGAATACGTTTTTTAGCCCAAAATTGGA
CGGCTCTGTTCCTTTGAGCACACCAGTAACAACACAAGTCTCCTCGTAGT
CGAGTCACAACCTCCCTGTGCTGGCGCATGCCCAACCCTGTGTGACATCG
TACATCAGTCGATCCGTGTTCGGCCGGGAAAACGGTGGACTTGCCATCGA
TAATACCGCCCCTCTCTGCGAAAGAACGCCGTTTTCGTATCACCGATCTG
TAGCAGAGCGATAGCAATCATGCCCGGAAGTACCAGGTGGCCTAACAGCG
CCCGGCGACCCCGACTTGAATTCGTCGGCCGTCCGTAGTTGTGCTAAGGC
AGGAGTTTGTGTCCGTGGATGGGACAGGGGGTGCTGTTTGGAGGTCCTCC
ATCCAGTTCGCAACATTCGTTTGTGGCGAAGAGGGCAAACGTTGTCTGCC
GCTTGCGGGCAGGTCTGTTCTGGAGGTCAGCTCCGGCCTTGGGCTCGGCG
CCATCGCGGCGTGGCACCTGGGGGCATCACCGGTGGTGAGATTTGCATGC
TTCGAGCGCCTCGAAGGAAATGCTTCTCTGGCGGTTTTGTTTTCGTGTCC
CACCTTGGCACGGATCAGTAGCTCAATGAACGTGGTAGGTTGTTTGCTTG
CACGAGATGCTGTATGGTGTTAATAATCGTGCTTAGAAACAGATCAAGCG
CTGCACAGCGGCCGTTTCCCCGATGGGAGCACATGAGATCCTGCGTCGAG
CCGTCCTGGCAAGTAGAAATGAGGCCCAACGTTCAAACCCGTGTTTTCAC
TTGTCAAGTTGGAACCTCTGTGACTCTTCGTAACGGATCGCCCACGCCCC
ACTATTTTACGCCAGTCGAACTTCATCTCCGTTCAGCCCTGTCCTCCTTT
GTAACAAAACTCACTTTACATTAGCGATGAGGGTACTTACCGCCCAACCA
GCCTGGGCTTCAATTTTGCCGTCGATTGCCAACTGCTAAACCAGTTTATG
TATCGATCGTTGAGAATCGACTTTCCGGTGACAACAGGTTGCTACAGATG
TCGACGAAGAAAACGGCCCTATGGCCCTCCTTTCATACAACGCAGTTGCC
AATTGCAGCCGAAGGCTAGCATCAGTCAAGAACCATGGGACAAGCGCGGG
AGGAGAGCGGGACGGGGAGGAGTCTTGCCTTCCTCTGACCGATATTGAGG
TCGACAAGGCAGATGGTCGCGATACCAGCTGGGCAAAGGGCGATATGAAA
CAACCTCTCCACGTGCGAGCGCTGAGATGGGGCAGCAGCTCTCAGCTGGC
AGACGCAATGACTACCTTTGAAGGGTTTGGCCCCGACGTTGTTCTAGCGT
GAGTTTGTTGGAATGGCACCATGCGTGCATTTAGTATTACGTACATTTGT
AGGGCGAGAGAAAGGGGACATTTAATTAACCATTTTCTTAGATTGAGCCT
GTAATCGGAACCGTCTACCGCACCGTATATATTTCACATGGAACCGTGAT
CGAAAGCGGTGACTAGTCGCGCCGATAATAATGCACCTGCCCCGCTTGGC
TTACATGCGCGGTGGTGCACTCCGTATGCGTGCTGCATTCGCCGCGATAT
AGAAAACATATAATGACGATATTTTGGGGCCAAAACAGACTGTCCCCAAC
GGGTTTTTTTTCCCGTTCAGGTCCTGGTTGAGAACGTTTTTGATATCAAG
TCCTATGGTGGGACGGTAACGCAAATTCTGCTCTGGAACTCCATCGTCGC
CCCCTATATCCACATGACCCCCCTATCCCACCTCCCACGGTATGTCCGCA
CAGGTGTGACGTGATCTTCGATGAATCTCTACTCCCTGATTTATCGGATA
CGCTCGCGGGGGCGTGCGTCCTGAAGACCAGGGAAGGAAAACGTCCAACC
CTCTGCATGTCGCACCAACGGCGAAACCGCGGTCGCGAGGGGCCTTTTTT
CGCGAACTTGTCAACGCGATTGGGGGGGGGGGCATGGGAAGAAGTGCATC
GGGAGGACGACCTTTCTGTTTTCATTTTTCGCGGTGCCGTCGCGTGA back to topCoding sequence (CDS) from alignment at S-dermatodea_contig10680:3529..5875- >mRNA_S-dermatodea_contig10680.473.1 ID=mRNA_S-dermatodea_contig10680.473.1|Name=mRNA_S-dermatodea_contig10680.473.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1686bp|location=Sequence derived from alignment at S-dermatodea_contig10680:3529..5875- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGGAGGGCGACGAGCAGGCGCGATTTGAGGACGATACGGACAGCTTCAT
GCTGAGGAGGAGAGAGTTTTGCTTCCCGGGCATCCCACCAAGAGGAGGGC
GACGAGCAGGCGCGATTTGAGGACGATACGGACAGCTTCATGCTGAGGAG
GAGAGAGTTTTGCTTCCCGGGCATCCCACCAATTGTGCTAAGGCAGGAGT
TTGTGTCCGTGGATGGGACAGGGGGTGCTGTTTGGAGGTCCTCCATCCAG
TTCGCAACATTCGTTTGTGGCGAAGAGGGCAAACGTTGTCTGCCGCTTGC
GGGCAGGTCTGTTCTGGAGGTCAGCTCCGGCCTTGGGCTCGGCGCCATCG
CGGCGTGGCACCTGGGGGCATCACCGGTGTTGTGCTAAGGCAGGAGTTTG
TGTCCGTGGATGGGACAGGGGGTGCTGTTTGGAGGTCCTCCATCCAGTTC
GCAACATTCGTTTGTGGCGAAGAGGGCAAACGTTGTCTGCCGCTTGCGGG
CAGGTCTGTTCTGGAGGTCAGCTCCGGCCTTGGGCTCGGCGCCATCGCGG
CGTGGCACCTGGGGGCATCACCGGTGGTTGCTACAGATGTCGACGAAGAA
AACGGCCCTATGGCCCTCCTTTCATACAACGCAGTTGCCAATTGCAGCCG
AAGGCTAGCATCAGTCAAGAACCATGGGACAAGCGCGGGAGGAGAGCGGG
ACGGGGAGGAGTCTTGCCTTCCTCTGACCGATATTGAGGTCGACAAGGCA
GATGGTCGCGATACCAGCTGGGCAAAGGGCGATATGAAACAACCTCTCCA
CGTGCGAGCGCTGAGATGGGGCAGCAGCTCTCAGCTGGCAGACGCAATGA
CTACCTTTGAAGGGTTTGGCCCCGACGTTGTTCTAGCGTTGCTACAGATG
TCGACGAAGAAAACGGCCCTATGGCCCTCCTTTCATACAACGCAGTTGCC
AATTGCAGCCGAAGGCTAGCATCAGTCAAGAACCATGGGACAAGCGCGGG
AGGAGAGCGGGACGGGGAGGAGTCTTGCCTTCCTCTGACCGATATTGAGG
TCGACAAGGCAGATGGTCGCGATACCAGCTGGGCAAAGGGCGATATGAAA
CAACCTCTCCACGTGCGAGCGCTGAGATGGGGCAGCAGCTCTCAGCTGGC
AGACGCAATGACTACCTTTGAAGGGTTTGGCCCCGACGTTGTTCTAGCGT
GTGACGTGATCTTCGATGAATCTCTACTCCCTGATTTATCGGATACGCTC
GCGGGGGCGTGCGTCCTGAAGACCAGGGAAGGAAAACGTCCAACCCTCTG
CATGTCGCACCAACGGCGAAACCGCGGTCGCGAGGGGCCTTTTTTCGCGA
ACTTGTCAACGCGATTGGGGGGGGGGGCATGGGAAGAAGTGCATCGGGAG
GACGACCTTTCTGTTTTCATTTTTCGCGGTGCCGTCGCGTGAGTGTGACG
TGATCTTCGATGAATCTCTACTCCCTGATTTATCGGATACGCTCGCGGGG
GCGTGCGTCCTGAAGACCAGGGAAGGAAAACGTCCAACCCTCTGCATGTC
GCACCAACGGCGAAACCGCGGTCGCGAGGGGCCTTTTTTCGCGAACTTGT
CAACGCGATTGGGGGGGGGGGCATGGGAAGAAGTGCATCGGGAGGACGAC
CTTTCTGTTTTCATTTTTCGCGGTGCCGTCGCGTGA back to top
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