mRNA_S-dermatodea_contig10660.466.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig10660.466.1 vs. uniprot
Match: D8LQI7_ECTSI (BIG1, ArfGEF protein of the BIG/GBF family n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQI7_ECTSI) HSP 1 Score: 266 bits (679), Expect = 5.690e-74 Identity = 261/552 (47.28%), Postives = 306/552 (55.43%), Query Frame = 1
Query: 4 FQQLWWPLLFGVSEAMGDPRPPVRSSALAAMSDILDSHGSIFSPQTWGLLFRGVVSPVFESAIMDPSSHLSSEWPGQEEDPREVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----GGTWSRLSSPFSALRGGAGTPSRGATTTRSPGSPPTGDPRSAVSLQRAAAVETGWTATMAEPLLDMCFGIFFKYGEATLPLLPEVLALHQRCICQESEVLARIALRSLGRFVTSMHKSFPAASATIIRRQAAPGAEEGGVADLSEEGK-DEEYTVWDCLTSSLCAIMHDNLPLELLSNPLHIAPEQPSPFLATSSASASAPAARDAR----EASSSPAWM------AEQDSSGGEDRSXXXXXXXXXXXXXERPESESSWGELQDAAGGGGAGEEEADGERGEGGERISNEASSHGGAEANGARDADQPNEQSREAGGRVAGXXXXXXXXXXXXXXXXXXEGETSMGDHMVGXXXXXXXXXXXXXXXNASSGA-----------RRPNLGALMTMLVVSLRMQRLVHWVVRKRCLDGLSEENLVDLLAALE 1578
+ QLWWPLLFG+SEA+GDPRP VRSSAL+A+S IL HG+IFS QTWGLLFRGVV+PVFE+AI +P+ LSS+WPGQE P +VA XXXXXXXXXXXXXXXXXXXXXXXXXXXXX GG + R P S+ GG L D G +G A +P L QRCICQESEVLARI L SLGRFVT+MHK F AS TI R +A G E+G A+ G D++YT+WD LTSSLCAI+ DNLP EL+ +I + P +A+++ + A + + ASSSPAW+ XXXXXXXXXXXXX SESSWGELQDA G GG E +D G + E GA + ++ + P GR GXXXXXXX + +V + SS + R PNL ALMTMLVVSLRMQRLVHWVVRKRCLDGLS NLVDLLAALE
Sbjct: 1502 YLQLWWPLLFGLSEAIGDPRPAVRSSALSALSHILTEHGAIFSAQTWGLLFRGVVNPVFENAITEPTQPLSSDWPGQEPGPLQVAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKGYGGGYCRPPRPSSS--GG---------------------------------------------LRDKLDGY---HGGAAAGAVPRDLL--QRCICQESEVLARIGLTSLGRFVTAMHKGFSDASETITRPKATAGGEDGWAANGPARGDADDKYTIWDTLTSSLCAIVQDNLPSELVDQEYNIDEAEEMPPIASAADDNTLTTAEEGQGNTNAASSSPAWIDTARPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSESSWGELQDARGDGGGAAESSDVPGAVGNDEADGEKREEWGAADSEGKNGEGP--------GREEGXXXXXXXGGGVPEVELETPPPAAAEGAVVDDADVVMVSPRGGGSGHGSSASVDFDGATGGVTRHPNLRALMTMLVVSLRMQRLVHWVVRKRCLDGLSANNLVDLLAALE 1993
BLAST of mRNA_S-dermatodea_contig10660.466.1 vs. uniprot
Match: A0A835YNY5_9STRA (SEC7 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNY5_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 2.300e-10 Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 1
Query: 10 QLWWPLLFGVSEAMGDPRPPVRSSALAAMSDILDSHGSIFSPQTWGLLFRGVVSPVFESAIMD 198
QLWWPLLFG+SE +G P+R L + IL ++G +F+ QTWGLLF+GV+ P+ E A D
Sbjct: 1913 QLWWPLLFGLSENVGSACAPLRHRCLDTLVSILTAYGGLFTTQTWGLLFKGVLGPMMEGAATD 1975
BLAST of mRNA_S-dermatodea_contig10660.466.1 vs. uniprot
Match: A0A835YUF7_9STRA (SEC7 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUF7_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 4.000e-10 Identity = 95/332 (28.61%), Postives = 138/332 (41.57%), Query Frame = 1
Query: 10 QLWWPLLFGVSEAMG---DPRPPVRSSALAAMSDILDSHGSIFSPQTWGLLFRGVVSPVFESAIMDPSSHLSSEWPGQEEDPREVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGTWSRLSSPFSALRGGAGTPSRGATTTRSPGSPPTGDPRSAVSLQRAAAVETGWTATMAEPLLDMCFGIFFKYGEATLPLLPEVLALHQRCICQE--SEVLARIALRSLGRFVTSMHKSFPAASATIIRRQAAPGAEEGGVADLSEEGKDEE---------------------YTVWDCLTSSLCAIMHDNLPLELLSNPLHIAPEQPSPFLAT 927
QLWWPLLFG+SE++G D R +R + L A+++IL HG +FS TW LLF+GV++P+ + A +DP++ S ED ++ XXXXXXXXXXXX G +SS W A +L ++F +G T PLLP++LAL + C ++ S LAR A+ + F II +A EE A S+ G + T WDC+T+++ A++ D LP L + + E P P L+T
Sbjct: 1795 QLWWPLLFGLSESVGGAADAR--LRHACLDALTNILVRHGDVFSAATWALLFKGVLAPMMDGAAVDPAA--SGRGAFSAEDNSDIVDGAFAPDADAAGXXXXXXXXXXXXADCGGDGG-----MSS---------------------------------------------WVDDTAPRVLAALSRLYFAHGARTRPLLPDLLALLRACGPRQAGSAALARTAVDAAANF--------------IIELEAHEEDEEEWDAAHSDAGLPPDPTSSSAVXXXXXXXXAVPSIDTTAWDCVTAAITAMLADALPSATLEDDALLQLEAP-PLLST 2057
BLAST of mRNA_S-dermatodea_contig10660.466.1 vs. uniprot
Match: A0A7S1XB40_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XB40_9RHOD) HSP 1 Score: 62.8 bits (151), Expect = 1.250e-6 Identity = 27/65 (41.54%), Postives = 41/65 (63.08%), Query Frame = 1
Query: 16 WWPLLFGVSEAMGDPRPPVRSSALAAMSDILDSHGSIFSPQTWGLLFRGVVSPVFESAIMDPSSH 210
W+P+L G++ A+GD R VRS+A + +L S+G +F W L+FRGV+SP+F+ P H
Sbjct: 314 WFPVLTGLANAIGDSRENVRSTASEGLFSVLKSYGHMFDTGMWKLIFRGVLSPIFDDVEHLPGGH 378
BLAST of mRNA_S-dermatodea_contig10660.466.1 vs. uniprot
Match: A0A2V3IFG2_9FLOR (Brefeldin A-inhibited guanine nucleotide-exchange protein 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFG2_9FLOR) HSP 1 Score: 62.4 bits (150), Expect = 1.990e-6 Identity = 26/56 (46.43%), Postives = 40/56 (71.43%), Query Frame = 1
Query: 16 WWPLLFGVSEAMGDPRPPVRSSALAAMSDILDSHGSIFSPQTWGLLFRGVVSPVFE 183
W+P+L G++ A+ D R VR++A A + +L+ +G FSP W L+FRGV+SPVF+
Sbjct: 1331 WFPILTGLAAALQDDRSQVRTAANAGLFKVLEEYGGQFSPDLWVLIFRGVISPVFD 1386
BLAST of mRNA_S-dermatodea_contig10660.466.1 vs. uniprot
Match: A0A0G4J3X5_PLABS (SEC7 domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J3X5_PLABS) HSP 1 Score: 61.2 bits (147), Expect = 4.440e-6 Identity = 29/77 (37.66%), Postives = 45/77 (58.44%), Query Frame = 1
Query: 13 LWWPLLFGVSEAMGDPRPPVRSSALAAMSDILDSHGSIFSPQTWGLLFRGVVSPVFESAIMDPSSHLSSEWPGQEED 243
+W L G+S+A+GD RP VR+ AL+ + +L G FS QTW +LF+ V+ P+F+ + DP + G +D
Sbjct: 1247 IWLLALTGLSKAVGDARPEVRTRALSVLHAVLRELGKEFSVQTWRMLFKVVLIPMFDDVVKDPIGQRVGDGTGSGDD 1323
BLAST of mRNA_S-dermatodea_contig10660.466.1 vs. uniprot
Match: A0A7S0ZHX6_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZHX6_9RHOD) HSP 1 Score: 60.8 bits (146), Expect = 5.570e-6 Identity = 31/80 (38.75%), Postives = 43/80 (53.75%), Query Frame = 1
Query: 16 WWPLLFGVSEAMGDPRPPVRSSALAAMSDILDSHGSIFSPQTWGLLFRGVVSPVFESAIMDPSSHLSSEWPGQEEDPREV 255
W+P+L ++ GDPR VRS A + +L + G F P+ W L+F+GVVSPVF D H W Q D +E+
Sbjct: 711 WFPVLTALANCTGDPRISVRSEAKTLLFRVLANPGKSFDPEMWSLIFKGVVSPVF-----DDIKHAPDNW--QSPDGKEI 783 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10660.466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10660.466.1 >prot_S-dermatodea_contig10660.466.1 ID=prot_S-dermatodea_contig10660.466.1|Name=mRNA_S-dermatodea_contig10660.466.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=526bp GFQQLWWPLLFGVSEAMGDPRPPVRSSALAAMSDILDSHGSIFSPQTWGLback to top mRNA from alignment at S-dermatodea_contig10660:2975..7912+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig10660.466.1 ID=mRNA_S-dermatodea_contig10660.466.1|Name=mRNA_S-dermatodea_contig10660.466.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4938bp|location=Sequence derived from alignment at S-dermatodea_contig10660:2975..7912+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig10660:2975..7912+ >mRNA_S-dermatodea_contig10660.466.1 ID=mRNA_S-dermatodea_contig10660.466.1|Name=mRNA_S-dermatodea_contig10660.466.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3156bp|location=Sequence derived from alignment at S-dermatodea_contig10660:2975..7912+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |