mRNA_S-dermatodea_contig10655.457.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10655.457.1
Unique NamemRNA_S-dermatodea_contig10655.457.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig10655.457.1 vs. uniprot
Match: D8LDW6_ECTSI (Cupin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDW6_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 4.410e-38
Identity = 65/120 (54.17%), Postives = 87/120 (72.50%), Query Frame = 1
Query:    1 TQMIYVLEGDLLRTGFVEELGGGRVIVNDLSKGDATFFPQGLIHYQQNLACDNATFVASLDSVDPGVVFIASGFFQLPTEAIQAAVDFDALPQDVIETFVAGLPTAPMNARRKCLVECGL 360
            T+M YV+ G+ LR  FVEE GG   +VNDLS+GD TFFPQGLIHY+QNL C+  TF+A+L++ DPG V I + FF+LP+EAIQA+++F+      ++  +  LP AP  ARR+CL  CGL
Sbjct:   98 TEMQYVINGEHLRVAFVEENGGEGAVVNDLSQGDVTFFPQGLIHYEQNLGCEPVTFLAALNNDDPGAVTITTRFFELPSEAIQASLNFE---DPALQRLIESLPDAPAAARRQCLERCGL 214          
BLAST of mRNA_S-dermatodea_contig10655.457.1 vs. uniprot
Match: A0A6H5JV79_9PHAE (Cupin type-1 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JV79_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 7.530e-38
Identity = 63/118 (53.39%), Postives = 88/118 (74.58%), Query Frame = 1
Query:    1 TQMIYVLEGDLLRTGFVEELGGGRVIVNDLSKGDATFFPQGLIHYQQNLACDNATFVASLDSVDPGVVFIASGFFQLPTEAIQAAVDFDALPQDVIETFVAGLPTAPMNARRKCLVEC 354
            T+M+YV++G+ LR  FVEE GG   +VNDL++GD  FFPQGLIHYQQNL C+ ATF+A+L++ DPG + I + FF+LP EAIQA+V+F+   + V++  +  LP AP  AR++CL  C
Sbjct:   97 TEMVYVIKGEQLRVAFVEENGGEGAVVNDLAQGDVAFFPQGLIHYQQNLDCEPATFLAALNNEDPGAITITTRFFELPLEAIQASVNFE---EPVLQNLIESLPDAPAAARQQCLQRC 211          
BLAST of mRNA_S-dermatodea_contig10655.457.1 vs. uniprot
Match: A0A0L0GAB9_9EUKA (Cupin type-1 domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GAB9_9EUKA)

HSP 1 Score: 110 bits (274), Expect = 9.050e-28
Identity = 60/124 (48.39%), Postives = 77/124 (62.10%), Query Frame = 1
Query:    1 TQMIYVLEGDLLRTGFVEELGGGRVIVNDLSKGDATFFPQGLIHYQQNLACDNATFVASLDSVDPGVVFIASGFFQLPTEAIQAAVDFDALPQDVIETFVA----GLPTAPMNARRKCLVECGL 360
            T+  Y++EG+L   GFV E   GR ++ND+    +TFFPQGL+HYQQN+ C+ A F++ LDS DPG++ IA+    LP EAI AA D D       E FVA    GLP  P   R +CLV CGL
Sbjct:   87 TESAYMIEGELT-VGFVME--SGRTVINDIKADQSTFFPQGLLHYQQNMGCEPAGFISILDSSDPGLLVIAAAVAGLPEEAIAAAFDED-------EAFVAQMRMGLPKVPARGRAECLVRCGL 200          
BLAST of mRNA_S-dermatodea_contig10655.457.1 vs. uniprot
Match: A0A0L0FUE8_9EUKA (Cupin type-1 domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FUE8_9EUKA)

HSP 1 Score: 110 bits (275), Expect = 4.380e-27
Identity = 55/120 (45.83%), Postives = 78/120 (65.00%), Query Frame = 1
Query:    1 TQMIYVLEGDLLRTGFVEELGGGRVIVNDLSKGDATFFPQGLIHYQQNLACDNATFVASLDSVDPGVVFIASGFFQLPTEAIQAAVDFDALPQDVIETFVAGLPTAPMNARRKCLVECGL 360
            T+ +Y++EG  L  GFV E  GGR+I+ND+    +TFFPQGL+HYQQN+AC+ A F++ L+S DPG++ I +   +LP+EA++A  D DA     +     GLP  P   R +CL  CGL
Sbjct:  180 TESVYIIEG-ALTVGFVTE--GGRLILNDVKTDQSTFFPQGLLHYQQNMACEPAGFISILNSSDPGLLVIPAALAELPSEALEATFDEDAA---FVNQLRIGLPAGPARGRAECLRRCGL 293          
BLAST of mRNA_S-dermatodea_contig10655.457.1 vs. uniprot
Match: A0A0L0FML7_9EUKA (Cupin type-1 domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FML7_9EUKA)

HSP 1 Score: 102 bits (253), Expect = 2.540e-25
Identity = 51/120 (42.50%), Postives = 73/120 (60.83%), Query Frame = 1
Query:    1 TQMIYVLEGDLLRTGFVEELGGGRVIVNDLSKGDATFFPQGLIHYQQNLACDNATFVASLDSVDPGVVFIASGFFQLPTEAIQAAVDFDALPQDVIETFVAGLPTAPMNARRKCLVECGL 360
            T+ IYV+   +L  GFV E    R+++ND+    +TFFPQGL+HYQQN+ C+ A+F++ LDS DPG+  IA+    LP EA++A +D D      +     GLP  P  AR +CL  C +
Sbjct:   23 TETIYVVNA-MLTVGFVAE--SSRLVLNDIETDQSTFFPQGLLHYQQNMNCEPASFISILDSADPGLSVIAAALTALPDEALKAVLDEDV---SFVTQLRLGLPAGPARARSECLARCSM 136          
BLAST of mRNA_S-dermatodea_contig10655.457.1 vs. uniprot
Match: A0A0L0FDT9_9EUKA (Cupin type-1 domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FDT9_9EUKA)

HSP 1 Score: 104 bits (260), Expect = 4.630e-25
Identity = 52/120 (43.33%), Postives = 75/120 (62.50%), Query Frame = 1
Query:    1 TQMIYVLEGDLLRTGFVEELGGGRVIVNDLSKGDATFFPQGLIHYQQNLACDNATFVASLDSVDPGVVFIASGFFQLPTEAIQAAVDFDALPQDVIETFVAGLPTAPMNARRKCLVECGL 360
            T+ IY++EG  L  GFV E   GR+I ND+    +TFFP+GLIHYQQN+ C+ A +++ LD  D G++ ++     LP+EA++A  D DA   + +   + GLPT P   R +C V CGL
Sbjct:  152 TESIYIIEG-ALTVGFVTE--SGRLITNDVIVDQSTFFPRGLIHYQQNMGCEPAGYISMLDDSDAGLLVVSGVLGNLPSEALEATFDEDA---EFVNQLLMGLPTGPARGRAECFVRCGL 265          
BLAST of mRNA_S-dermatodea_contig10655.457.1 vs. uniprot
Match: A0A0L0FU70_9EUKA (Cupin type-1 domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FU70_9EUKA)

HSP 1 Score: 104 bits (260), Expect = 4.870e-24
Identity = 54/120 (45.00%), Postives = 73/120 (60.83%), Query Frame = 1
Query:    1 TQMIYVLEGDLLRTGFVEELGGGRVIVNDLSKGDATFFPQGLIHYQQNLACDNATFVASLDSVDPGVVFIASGFFQLPTEAIQAAVDFDALPQDVIETFVAGLPTAPMNARRKCLVECGL 360
            T+ +YV++G +L  GFV E   GR+++ND+ K   TFFP+GL+HYQQN+ C  A F++ LD+ DPGV+ I      LP EA+ A    D   Q+ I     GLP  P  AR +CL  CGL
Sbjct:  292 TESLYVIDG-MLTVGFVAE--SGRLVLNDIEKDQTTFFPKGLMHYQQNMQCVPANFISILDTCDPGVLVITESLNALPDEALTATFGED---QEFINQLRLGLPDGPARARSECLKRCGL 405          
BLAST of mRNA_S-dermatodea_contig10655.457.1 vs. uniprot
Match: A0A507FDZ0_9FUNG (Cupin type-1 domain-containing protein n=2 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FDZ0_9FUNG)

HSP 1 Score: 94.7 bits (234), Expect = 2.080e-21
Identity = 51/119 (42.86%), Postives = 73/119 (61.34%), Query Frame = 1
Query:    1 TQMIYVLEGDLLRTGFVEELGGGRVIVNDLSKGDATFFPQGLIHYQQNLACDNATFVASLDSVDPGVVFIASGFFQLPTEAIQAAVDFDALPQDVIETFVAGLPTAPMNARRKCLVECG 357
            ++ IYV++G++ + GF+EE  G +VIVNDL +G ATF PQG IHYQ NL C+ A  +A+ ++ DPG + I + FF+LP  AI A++     P+  I      LP  P     +CL  CG
Sbjct:  107 SEAIYVIQGNV-QVGFIEE-NGAKVIVNDLVQGQATFIPQGSIHYQVNLGCEQAVMIAANNNEDPGTLTIPAQFFKLPDGAIAASLGGTLDPE--IRALNGSLPMNPAPGVEECLRRCG 221          
BLAST of mRNA_S-dermatodea_contig10655.457.1 vs. uniprot
Match: A0A815LD24_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A815LD24_9BILA)

HSP 1 Score: 90.1 bits (222), Expect = 1.880e-19
Identity = 48/120 (40.00%), Postives = 66/120 (55.00%), Query Frame = 1
Query:    1 TQMIYVLEGDLLRTGFVEELGGGRVIVNDLSKGDATFFPQGLIHYQQNLACDNATFVASLDSVDPGVVFIASGFFQLPTEAIQAAVDFDALPQDVIETFVAGLPTAPMNARRKCLVECGL 360
            T M  V +GD +RTGF  E   G+ +V  L +   T FPQG +H++QNL+C  A FVA  +SVDPG+   +S FFQLP + I A+++        +      LP AP+     C   CGL
Sbjct:  156 TSMFVVTQGDNVRTGFYNE-HTGKFVVTPLKQYQGTVFPQGALHFEQNLSCKQAVFVAGFNSVDPGLNSGSSTFFQLPIDLIAASLNITTAQATSLRDH---LPAAPLQTVASCRARCGL 271          
BLAST of mRNA_S-dermatodea_contig10655.457.1 vs. uniprot
Match: A0A815GW40_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A815GW40_9BILA)

HSP 1 Score: 90.9 bits (224), Expect = 2.530e-19
Identity = 45/120 (37.50%), Postives = 72/120 (60.00%), Query Frame = 1
Query:    1 TQMIYVLEGDLLRTGFVEELGGGRVIVNDLSKGDATFFPQGLIHYQQNLACDNATFVASLDSVDPGVVFIASGFFQLPTEAIQAAVDFDALPQDVIETFVAGLPTAPMNARRKCLVECGL 360
            T++ Y  +GD  +TGF +E  GG+ + + + +G  + FPQG IH++QN+ C+ A FVA+ D  DPG + IA GFF LPT+ + A++    + +D +    + LP        +CL+ CGL
Sbjct:  210 TEINYAAKGDF-QTGFFQE-NGGKFVGHIVREGQVSVFPQGAIHFEQNMGCETAMFVAAFDHEDPGTLTIADGFFSLPTDILAASLG--GISEDDVMRLGSNLPKNAGFGTEECLIRCGL 325          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10655.457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDW6_ECTSI4.410e-3854.17Cupin-like protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JV79_9PHAE7.530e-3853.39Cupin type-1 domain-containing protein n=6 Tax=Ect... [more]
A0A0L0GAB9_9EUKA9.050e-2848.39Cupin type-1 domain-containing protein n=1 Tax=Sph... [more]
A0A0L0FUE8_9EUKA4.380e-2745.83Cupin type-1 domain-containing protein n=1 Tax=Sph... [more]
A0A0L0FML7_9EUKA2.540e-2542.50Cupin type-1 domain-containing protein n=1 Tax=Sph... [more]
A0A0L0FDT9_9EUKA4.630e-2543.33Cupin type-1 domain-containing protein n=1 Tax=Sph... [more]
A0A0L0FU70_9EUKA4.870e-2445.00Cupin type-1 domain-containing protein n=1 Tax=Sph... [more]
A0A507FDZ0_9FUNG2.080e-2142.86Cupin type-1 domain-containing protein n=2 Tax=Chy... [more]
A0A815LD24_9BILA1.880e-1940.00Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
A0A815GW40_9BILA2.530e-1937.50Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10655contigS-dermatodea_contig10655:2889..3658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.7
Seed ortholog evalue6.9e-30
Seed eggNOG ortholog2880.D7G6F4
EggNOG free text desc.nutrient reservoir activity
EggNOG OGs2BYKQ@1,2QQ4A@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size360
Cds size354
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10655.457.1prot_S-dermatodea_contig10655.457.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10655 2889..3652 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924167.8641-CDS-S-dermatodea_contig10655:2888..29991622924167.8641-CDS-S-dermatodea_contig10655:2888..2999Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10655 2889..2999 -
1694079064.0806954-CDS-S-dermatodea_contig10655:2888..29991694079064.0806954-CDS-S-dermatodea_contig10655:2888..2999Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10655 2889..2999 -
1622924167.8752143-CDS-S-dermatodea_contig10655:3409..36521622924167.8752143-CDS-S-dermatodea_contig10655:3409..3652Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10655 3410..3652 -
1694079064.0933821-CDS-S-dermatodea_contig10655:3409..36521694079064.0933821-CDS-S-dermatodea_contig10655:3409..3652Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10655 3410..3652 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924167.884178-UTR-S-dermatodea_contig10655:3652..36581622924167.884178-UTR-S-dermatodea_contig10655:3652..3658Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10655 3653..3658 -
1694079064.1022234-UTR-S-dermatodea_contig10655:3652..36581694079064.1022234-UTR-S-dermatodea_contig10655:3652..3658Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10655 3653..3658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10655.457.1

>prot_S-dermatodea_contig10655.457.1 ID=prot_S-dermatodea_contig10655.457.1|Name=mRNA_S-dermatodea_contig10655.457.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=118bp
MIYVLEGDLLRTGFVEELGGGRVIVNDLSKGDATFFPQGLIHYQQNLACD
NATFVASLDSVDPGVVFIASGFFQLPTEAIQAAVDFDALPQDVIETFVAG
LPTAPMNARRKCLVECGL
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mRNA from alignment at S-dermatodea_contig10655:2889..3658-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10655.457.1 ID=mRNA_S-dermatodea_contig10655.457.1|Name=mRNA_S-dermatodea_contig10655.457.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=770bp|location=Sequence derived from alignment at S-dermatodea_contig10655:2889..3658- (Saccorhiza dermatodea SderLu1190fm monoicous)
ACGCAGATGATTTACGTCCTCGAGGGTGACTTGCTGCGAACGGGCTTCGT CGAGGAGCTCGGCGGAGGCCGTGTCATAGTCAACGACCTCAGCAAAGGAG ACGCGACGTTCTTCCCCCAGGGTCTCATTCACTACCAGCAGAACCTTGCC TGCGATAATGCAACCTTCGTTGCTTCGCTTGACTCCGTGGACCCCGGCGT GGTGTTCATCGCATCGGGCTTCTTCCAGCTGCCCACCGAGGCGATCCAGG TGATTTCCAAATAGTGGCCCTCTCTCGGCAACATCCCCGCGAAGGGGCCG TATATAATCGATCGAATTCACTCCATGCTCTTCGTGCAAGCTAACCCGAC ACACACACCAGCTTGTATAATCCGAAGTGTGTGTGTAAATGAGCCGCAGG GGCCCACCCCGAAATTACGTGTCTGTCAGCTGTCGACGACATGCGTTTGA CAGCACTGTCTGTGTGCGCACTTGCCCCATAGCCTCCGTTTACCTTCCAC TCAATTGGAGCCGATTTTCCTACAGACCGCCGAACCCCACTCCTGAACAC ACACTGCACGCGATCACGTTCGCCGTGTCCATCGTACTGCAACAGCCCAA GGACCCCTTCCCCTCCCTCCCGCGTCTCCATCCGTCCAATACTTGCTGTC CTCTTGTAGGCGGCAGTGGACTTTGATGCCCTACCGCAGGACGTCATCGA GACCTTCGTCGCCGGTTTGCCCACGGCCCCGATGAACGCCCGCCGCAAGT GCCTAGTGGAGTGTGGGCTT
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Coding sequence (CDS) from alignment at S-dermatodea_contig10655:2889..3658-

>mRNA_S-dermatodea_contig10655.457.1 ID=mRNA_S-dermatodea_contig10655.457.1|Name=mRNA_S-dermatodea_contig10655.457.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at S-dermatodea_contig10655:2889..3658- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATTTACGTCCTCGAGGGTGACTTGCTGCGAACGGGCTTCGTCGAGGA
GCTCGGCGGAGGCCGTGTCATAGTCAACGACCTCAGCAAAGGAGACGCGA
CGTTCTTCCCCCAGGGTCTCATTCACTACCAGCAGAACCTTGCCTGCGAT
AATGCAACCTTCGTTGCTTCGCTTGACTCCGTGGACCCCGGCGTGGTGTT
CATCGCATCGGGCTTCTTCCAGCTGCCCACCGAGGCGATCCAGATGATTT
ACGTCCTCGAGGGTGACTTGCTGCGAACGGGCTTCGTCGAGGAGCTCGGC
GGAGGCCGTGTCATAGTCAACGACCTCAGCAAAGGAGACGCGACGTTCTT
CCCCCAGGGTCTCATTCACTACCAGCAGAACCTTGCCTGCGATAATGCAA
CCTTCGTTGCTTCGCTTGACTCCGTGGACCCCGGCGTGGTGTTCATCGCA
TCGGGCTTCTTCCAGCTGCCCACCGAGGCGATCCAGGCGGCAGTGGACTT
TGATGCCCTACCGCAGGACGTCATCGAGACCTTCGTCGCCGGTTTGCCCA
CGGCCCCGATGAACGCCCGCCGCAAGTGCCTAGTGGAGTGTGGGCTTGCG
GCAGTGGACTTTGATGCCCTACCGCAGGACGTCATCGAGACCTTCGTCGC
CGGTTTGCCCACGGCCCCGATGAACGCCCGCCGCAAGTGCCTAGTGGAGT
GTGGGCTT
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