mRNA_S-dermatodea_contig10650.453.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10650.453.1
Unique NamemRNA_S-dermatodea_contig10650.453.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10650.453.1 vs. uniprot
Match: D8LQ80_ECTSI (Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ80_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 5.760e-38
Identity = 67/77 (87.01%), Postives = 71/77 (92.21%), Query Frame = 2 
Query:   56 TMPTYNEMVFEAIKALKERNGSSIQAIKKHITSTYPTLNFTPHQMRSALKKGTEGGKFIKVKSSYKLSAEAKKPAPK 286
            T PTYN MVF+AIK LKERNGSSIQAIKK IT+TYPTLNFTPHQMRSALKKG E GKFIK+K+SYKLSAEAKKPAPK
Sbjct:    4 TKPTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAPK 80
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BLAST of mRNA_S-dermatodea_contig10650.453.1 vs. uniprot
Match: A0A6H5KCU1_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU1_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 8.580e-34
Identity = 63/74 (85.14%), Postives = 67/74 (90.54%), Query Frame = 2 
Query:   62 PTYNEMVFEAIKALKERNGSSIQAIKKHITSTYPTLNFTPHQMRSALKKGTEGGKFIKVKSSYKLSAEAKKPAP 283
            PTYN MVF+AIK LKERNGSSIQAIKK IT+TYPTLNFTPHQMR ALKKG E GKFIK+K+SYKLS EAKKPAP
Sbjct:   99 PTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRGALKKGVESGKFIKMKASYKLSPEAKKPAP 172
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BLAST of mRNA_S-dermatodea_contig10650.453.1 vs. uniprot
Match: A0A6H5KST0_9PHAE (H15 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST0_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.400e-33
Identity = 61/70 (87.14%), Postives = 66/70 (94.29%), Query Frame = 2 
Query:   77 MVFEAIKALKERNGSSIQAIKKHITSTYPTLNFTPHQMRSALKKGTEGGKFIKVKSSYKLSAEAKKPAPK 286
            MVF+AIK LKERNGSSIQAIKK IT+TYPTLNFTPHQMRSALKKG E GKF+K+K+SYKLSAEAKKPAPK
Sbjct:    1 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFVKMKASYKLSAEAKKPAPK 70
[Close]
BLAST of mRNA_S-dermatodea_contig10650.453.1 vs. uniprot
Match: D8LQ75_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ75_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 1.210e-32
Identity = 62/70 (88.57%), Postives = 65/70 (92.86%), Query Frame = 2 
Query:   77 MVFEAIKALKERNGSSIQAIKKHITSTYPTLNFTPHQMRSALKKGTEGGKFIKVKSSYKLSAEAKKPAPK 286
            MVF+AIK+LKERNGSSIQAIKK IT+TYP LNFTPHQMRSALKKG E GKFIKVKSSYKLSAEAKKP PK
Sbjct:    1 MVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGVETGKFIKVKSSYKLSAEAKKPVPK 70
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BLAST of mRNA_S-dermatodea_contig10650.453.1 vs. uniprot
Match: D7G4I5_ECTSI (H15 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I5_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 2.180e-32
Identity = 60/73 (82.19%), Postives = 66/73 (90.41%), Query Frame = 2 
Query:   62 PTYNEMVFEAIKALKERNGSSIQAIKKHITSTYPTLNFTPHQMRSALKKGTEGGKFIKVKSSYKLSAEAKKPA 280
            PTY+ MVF+AIKALKER GSS+ A+KK I +TYP+LNFTPHQMRSALKKGTE GKFIKVKSSYKLS EAKKPA
Sbjct:    7 PTYSVMVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 79
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BLAST of mRNA_S-dermatodea_contig10650.453.1 vs. uniprot
Match: A0A6H5JHR9_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR9_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 4.510e-30
Identity = 57/68 (83.82%), Postives = 62/68 (91.18%), Query Frame = 2 
Query:   77 MVFEAIKALKERNGSSIQAIKKHITSTYPTLNFTPHQMRSALKKGTEGGKFIKVKSSYKLSAEAKKPA 280
            MVF+AIKALKER GSS+ A+KK I +TYP+LNFTPHQMRSALKKGTE GKFIKVKSSYKLS EAKKPA
Sbjct:    1 MVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 68
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BLAST of mRNA_S-dermatodea_contig10650.453.1 vs. uniprot
Match: D8LMF1_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF1_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 4.540e-29
Identity = 56/73 (76.71%), Postives = 62/73 (84.93%), Query Frame = 2 
Query:   59 MPTYNEMVFEAIKALKERNGSSIQAIKKHITSTYPTLNFTPHQMRSALKKGTEGGKFIKVKSSYKLSAEAKKP 277
            MPTY+EM   AI ALKERNGSS+ AIKKHI +TYPTLNF PHQ+R ALKKGTE G FIKVK+SYK+S EAKKP
Sbjct:    1 MPTYSEMAKVAILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTETGTFIKVKASYKVSPEAKKP 73
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BLAST of mRNA_S-dermatodea_contig10650.453.1 vs. uniprot
Match: D8LJB8_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB8_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 1.600e-27
Identity = 56/76 (73.68%), Postives = 65/76 (85.53%), Query Frame = 2 
Query:   59 MPTYNEMVFEAIKALKERNGSSIQAIKKHITSTYPTLNFTPHQMRSALKKGTEGGKFIKVKSSYKLSAEAKKPAPK 286
            MPTY+EM  EA+KALKERNGSS+ AIKKHIT++YP+L FT H MRSALKKG E GKFIKVK+SYKLSA  ++PA K
Sbjct:    1 MPTYDEMTIEAVKALKERNGSSLFAIKKHITASYPSLTFTAHFMRSALKKGVESGKFIKVKNSYKLSAYRQEPAAK 76
[Close]
BLAST of mRNA_S-dermatodea_contig10650.453.1 vs. uniprot
Match: A0A6H5JIM8_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM8_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.770e-25
Identity = 52/68 (76.47%), Postives = 60/68 (88.24%), Query Frame = 2 
Query:   59 MPTYNEMVFEAIKALKERNGSSIQAIKKHITSTYPTLNFTPHQMRSALKKGTEGGKFIKVKSSYKLSA 262
            MPTY+EM  EA+KALKERNGSS+ AIKKHIT++YP+L FT H +RSALKKG E GKFIKVK+SYKLSA
Sbjct:    1 MPTYDEMTVEAVKALKERNGSSLFAIKKHITASYPSLTFTGHFLRSALKKGVESGKFIKVKNSYKLSA 68
[Close]
BLAST of mRNA_S-dermatodea_contig10650.453.1 vs. uniprot
Match: A0A6H5K9S6_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S6_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.180e-22
Identity = 46/61 (75.41%), Postives = 53/61 (86.89%), Query Frame = 2 
Query:   77 MVFEAIKALKERNGSSIQAIKKHITSTYPTLNFTPHQMRSALKKGTEGGKFIKVKSSYKLS 259
            MVF+AIK LKERNGSSIQA+KK IT+TYP L+FTPHQMRSALKKG E GKFIKV+ +  L+
Sbjct:    1 MVFDAIKTLKERNGSSIQAMKKSITATYPALHFTPHQMRSALKKGVETGKFIKVRHALPLA 61
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10650.453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ80_ECTSI5.760e-3887.01Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5KCU1_9PHAE8.580e-3485.14H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KST0_9PHAE2.400e-3387.14H15 domain-containing protein n=6 Tax=Ectocarpus T... [more]
D8LQ75_ECTSI1.210e-3288.57H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4I5_ECTSI2.180e-3282.19H15 domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5JHR9_9PHAE4.510e-3083.82H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LMF1_ECTSI4.540e-2976.71H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJB8_ECTSI1.600e-2773.68H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JIM8_9PHAE1.770e-2576.47H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K9S6_9PHAE1.180e-2275.41H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10650contigS-dermatodea_contig10650:4971..6076 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size375
Cds size375
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10650.453.1prot_S-dermatodea_contig10650.453.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10650 4971..6076 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924167.5592804-CDS-S-dermatodea_contig10650:4970..51101622924167.5592804-CDS-S-dermatodea_contig10650:4970..5110Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10650 4971..5110 -
1694079063.8787556-CDS-S-dermatodea_contig10650:4970..51101694079063.8787556-CDS-S-dermatodea_contig10650:4970..5110Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10650 4971..5110 -
1622924167.5685894-CDS-S-dermatodea_contig10650:5558..57171622924167.5685894-CDS-S-dermatodea_contig10650:5558..5717Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10650 5559..5717 -
1694079063.8894644-CDS-S-dermatodea_contig10650:5558..57171694079063.8894644-CDS-S-dermatodea_contig10650:5558..5717Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10650 5559..5717 -
1622924167.5766113-CDS-S-dermatodea_contig10650:6000..60761622924167.5766113-CDS-S-dermatodea_contig10650:6000..6076Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10650 6001..6076 -
1694079063.8976889-CDS-S-dermatodea_contig10650:6000..60761694079063.8976889-CDS-S-dermatodea_contig10650:6000..6076Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10650 6001..6076 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10650.453.1

>prot_S-dermatodea_contig10650.453.1 ID=prot_S-dermatodea_contig10650.453.1|Name=mRNA_S-dermatodea_contig10650.453.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=125bp
PPLHTQPAELPFDLSPTENHADLQRDGVRGHQGPQGAQRLQHPGDQEAHH
LHLPHAQLHPAPDAQRSQEGNGRRKVHQGEELVQAQRRGQEARPEEEGRE
EGGEEGRQEKGSEEEGGQEARGEEA
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mRNA from alignment at S-dermatodea_contig10650:4971..6076-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10650.453.1 ID=mRNA_S-dermatodea_contig10650.453.1|Name=mRNA_S-dermatodea_contig10650.453.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1106bp|location=Sequence derived from alignment at S-dermatodea_contig10650:4971..6076- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTCCCCTCCACACACAACCAGCAGAACTTCCGTTTGACTTATCCCCAAC
AGAAAACCATGCCGACCTACAACGAGGTGAGGGTGACGCTCGTCTGTGAC
GTTCTCCGTGCTCATCATAGAGTGTAATTGACTACGTCGCACGTTATTTT
GGCTTTGGCACCATCTCTGTCCGCCAGGGACAGCAGAATATCATACCGTA
CAAGGACCGGTATACTCTGTAAGAAGAGGAGTTGACAACAGAGCAGAAGC
ACTTGACCAGTTACCAAACATCACAGCTAGCCTCACTACAGAACACACTT
TCAGCACTACCCTCCGTCCGCGCTGCCCGCTCCATCTTGTGCCGTGATGC
CTCCCGCAGATGGTGTTCGAGGCCATCAAGGCCCTCAAGGAGCGCAACGG
CTCCAGCATCCAGGCGATCAAGAAGCACATCACCTCCACCTACCCCACGC
TCAACTTCACCCCGCACCAGATGCGCAGCGCTCTCAAGAAGGGAACGGAA
GGCGGAAAGTTCATCAAGGTAAGAGGCCCTGTCTCTCTCGCGTGATGTGT
CAGGCACGCGTTCCACGGAGGGGGGCGATGTGCTTGGTGCTTGCGGAGGG
GTTATGTTCTAGGTGCAAGAAATATTTCATTTTTTGTTTGGTTATGCATG
AGAAAGTCCAACGGCAATCGGTGCTTGCACACCACAGAGTAAACTACTGC
TGTAACTCTCATTCAGCTGACATATTGCCTGCGGCGTGTACACCTTTGGA
GCACGTGCAAACACACGGCCCGAGCGTCTCTCGAGCCATCAATTGACGCC
TCACGCCGATTCCAGCTCGAAGCAGGCCGTGTCTGGCGTGTAGTGTGTCG
TGATGCACATTGCTTTTTGAATCGTCCGTGTCCGTTGGTCCCGATGATCT
GATTTTTTACTGGCTCTCTATTGTCGATCCCGCCTTCCCATGACTTGGTA
TCGTACATCACGACAGGTGAAGAGCTCGTACAAGCTCAGCGCCGAGGCCA
AGAAGCCCGCCCCGAAGAAGAAGGTCGTGAAGAAGGTGGTGAAGAAGGTC
GTCAAGAAAAAGGTAGTGAAGAAGAAGGTGGTCAAGAAGCCCGCGGCGAA
GAAGCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10650:4971..6076-

>mRNA_S-dermatodea_contig10650.453.1 ID=mRNA_S-dermatodea_contig10650.453.1|Name=mRNA_S-dermatodea_contig10650.453.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at S-dermatodea_contig10650:4971..6076- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTCCCCTCCACACACAACCAGCAGAACTTCCGTTTGACTTATCCCCAAC
AGAAAACCATGCCGACCTACAACGAGCCTCCCCTCCACACACAACCAGCA
GAACTTCCGTTTGACTTATCCCCAACAGAAAACCATGCCGACCTACAACG
AGATGGTGTTCGAGGCCATCAAGGCCCTCAAGGAGCGCAACGGCTCCAGC
ATCCAGGCGATCAAGAAGCACATCACCTCCACCTACCCCACGCTCAACTT
CACCCCGCACCAGATGCGCAGCGCTCTCAAGAAGGGAACGGAAGGCGGAA
AGTTCATCAAGATGGTGTTCGAGGCCATCAAGGCCCTCAAGGAGCGCAAC
GGCTCCAGCATCCAGGCGATCAAGAAGCACATCACCTCCACCTACCCCAC
GCTCAACTTCACCCCGCACCAGATGCGCAGCGCTCTCAAGAAGGGAACGG
AAGGCGGAAAGTTCATCAAGGTGAAGAGCTCGTACAAGCTCAGCGCCGAG
GCCAAGAAGCCCGCCCCGAAGAAGAAGGTCGTGAAGAAGGTGGTGAAGAA
GGTCGTCAAGAAAAAGGTAGTGAAGAAGAAGGTGGTCAAGAAGCCCGCGG
CGAAGAAGCCGTGAAGAGCTCGTACAAGCTCAGCGCCGAGGCCAAGAAGC
CCGCCCCGAAGAAGAAGGTCGTGAAGAAGGTGGTGAAGAAGGTCGTCAAG
AAAAAGGTAGTGAAGAAGAAGGTGGTCAAGAAGCCCGCGGCGAAGAAGCC
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