mRNA_S-dermatodea_contig1065.451.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1065.451.1
Unique NamemRNA_S-dermatodea_contig1065.451.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig1065.451.1 vs. uniprot
Match: D7FVH2_ECTSI (Myosin I, high molecular weight-Acanthamoeba sp n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVH2_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 3.570e-17
Identity = 40/42 (95.24%), Postives = 42/42 (100.00%), Query Frame = 3 
Query:  270 MATFFESGTWVWIPDEDEVVLPAKAKSAFRLGERATVVLESG 395
            MATFFESGTWVWIPDEDEVVLPAKAKSAFRLGERATVV+E+G
Sbjct:    1 MATFFESGTWVWIPDEDEVVLPAKAKSAFRLGERATVVMENG 42
[Close]
BLAST of mRNA_S-dermatodea_contig1065.451.1 vs. uniprot
Match: A0A836CJG2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJG2_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.320e-7
Identity = 22/40 (55.00%), Postives = 30/40 (75.00%), Query Frame = 3 
Query:  270 MATFFESGTWVWIPDEDEVVLPAKAKSAFRLGERATVVLE 389
            MAT+FE+G W+WIPD + VVLPAK  ++F+ GE   V L+
Sbjct:    1 MATYFEAGRWIWIPDAEHVVLPAKVVNSFKKGEPGKVTLD 40
[Close]
BLAST of mRNA_S-dermatodea_contig1065.451.1 vs. uniprot
Match: A0A7S1TYV3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYV3_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.400e-6
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 3 
Query:  270 MATFFESGTWVWIPDEDEVVLPAKAKSAFRLGERATVVLESG 395
            MATF E  TWVWIPDE EV LPAK  +AF+ G+ ATV+ E G
Sbjct:    1 MATF-EPETWVWIPDETEVALPAKVLTAFKPGDAATVLREDG 41
[Close]
BLAST of mRNA_S-dermatodea_contig1065.451.1 vs. uniprot
Match: A0A835YPP0_9STRA (Myosin I, high molecular weight-Acanthamoeba sp n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPP0_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.820e-5
Identity = 22/40 (55.00%), Postives = 29/40 (72.50%), Query Frame = 3 
Query:  270 MATFFESGTWVWIPDEDEVVLPAKAKSAFRLGERATVVLE 389
            MA FFE+G+W+WIPD  EVVLPAK  + F  GE   V+++
Sbjct:    1 MANFFEAGSWIWIPDSTEVVLPAKVVNTFYKGEPGKVLVD 40
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1065.451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FVH2_ECTSI3.570e-1795.24Myosin I, high molecular weight-Acanthamoeba sp n=... [more]
A0A836CJG2_9STRA1.320e-755.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1TYV3_9STRA1.400e-664.29Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A835YPP0_9STRA1.820e-555.00Myosin I, high molecular weight-Acanthamoeba sp n=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1065contigS-dermatodea_contig1065:19479..19876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue3e-15
Seed eggNOG ortholog2880.D7FVH2
Preferred nameMyo22
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG4229@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size398
Cds size129
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924167.514051-UTR-S-dermatodea_contig1065:19478..197471622924167.514051-UTR-S-dermatodea_contig1065:19478..19747Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1065 19479..19747 +
1694079063.8587487-UTR-S-dermatodea_contig1065:19478..197471694079063.8587487-UTR-S-dermatodea_contig1065:19478..19747Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1065 19479..19747 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924167.524433-CDS-S-dermatodea_contig1065:19747..198761622924167.524433-CDS-S-dermatodea_contig1065:19747..19876Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1065 19748..19876 +
1694079063.8686957-CDS-S-dermatodea_contig1065:19747..198761694079063.8686957-CDS-S-dermatodea_contig1065:19747..19876Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1065 19748..19876 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1065.451.1prot_S-dermatodea_contig1065.451.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1065 19748..19876 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1065.451.1

>prot_S-dermatodea_contig1065.451.1 ID=prot_S-dermatodea_contig1065.451.1|Name=mRNA_S-dermatodea_contig1065.451.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=43bp
MATFFESGTWVWIPDEDEVVLPAKAKSAFRLGERATVVLESGA
back to top

mRNA from alignment at S-dermatodea_contig1065:19479..19876+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1065.451.1 ID=mRNA_S-dermatodea_contig1065.451.1|Name=mRNA_S-dermatodea_contig1065.451.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=398bp|location=Sequence derived from alignment at S-dermatodea_contig1065:19479..19876+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AATCTAAAGAGGGAGGAGGGAGAGGGGCGCTGCCGCTAACGTGCGTGGTA
GTGGTCTCTACCGTGCCGTCCTTTCGAGACGAGGGAAAAGAAGAGGCGAG
AGAGCTTCGACAAGCCAGCCCTCTGGTCGGTCGGTCGGTCGTTCATCAAG
CCGTGTGTCACTAGAGGAGGGTTTCTCCTTTCTTCCAGGGTCTTTTTAAT
TCTTCTCTTCCCCCCCTTTTTTTGCTAGCCCGCTTCCTGCGGACGGGGGG
TGGGGTTTCTTAGAGAGACATGGCGACGTTTTTTGAGTCCGGGACCTGGG
TGTGGATCCCAGATGAGGATGAGGTGGTCTTGCCGGCGAAGGCCAAGTCG
GCGTTCCGGCTGGGAGAGCGAGCGACGGTGGTGCTGGAAAGCGGCGCG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig1065:19479..19876+

>mRNA_S-dermatodea_contig1065.451.1 ID=mRNA_S-dermatodea_contig1065.451.1|Name=mRNA_S-dermatodea_contig1065.451.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=258bp|location=Sequence derived from alignment at S-dermatodea_contig1065:19479..19876+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGACGTTTTTTGAGTCCGGGACCTGGGTGTGGATCCCAGATGAGGA
TGAGGTGGTCTTGCCGGCGAAGGCCAAGTCGGCGTTCCGGCTGGGAGAGC
GAGCGACGGTGGTGCTGGAAAGCGGCGCGATGGCGACGTTTTTTGAGTCC
GGGACCTGGGTGTGGATCCCAGATGAGGATGAGGTGGTCTTGCCGGCGAA
GGCCAAGTCGGCGTTCCGGCTGGGAGAGCGAGCGACGGTGGTGCTGGAAA
GCGGCGCG
back to top