mRNA_S-dermatodea_contig10640.448.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10640.448.1
Unique NamemRNA_S-dermatodea_contig10640.448.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10640.448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10640contigS-dermatodea_contig10640:6772..7314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size543
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10640.448.1prot_S-dermatodea_contig10640.448.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10640 6811..7113 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924167.2480986-UTR-S-dermatodea_contig10640:6771..68101622924167.2480986-UTR-S-dermatodea_contig10640:6771..6810Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10640 6772..6810 +
1694079063.720662-UTR-S-dermatodea_contig10640:6771..68101694079063.720662-UTR-S-dermatodea_contig10640:6771..6810Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10640 6772..6810 +
1622924167.268207-UTR-S-dermatodea_contig10640:7113..73141622924167.268207-UTR-S-dermatodea_contig10640:7113..7314Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10640 7114..7314 +
1694079063.735812-UTR-S-dermatodea_contig10640:7113..73141694079063.735812-UTR-S-dermatodea_contig10640:7113..7314Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10640 7114..7314 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924167.259702-CDS-S-dermatodea_contig10640:6810..71131622924167.259702-CDS-S-dermatodea_contig10640:6810..7113Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10640 6811..7113 +
1694079063.7286375-CDS-S-dermatodea_contig10640:6810..71131694079063.7286375-CDS-S-dermatodea_contig10640:6810..7113Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10640 6811..7113 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10640.448.1

>prot_S-dermatodea_contig10640.448.1 ID=prot_S-dermatodea_contig10640.448.1|Name=mRNA_S-dermatodea_contig10640.448.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=101bp
MLLLPLHELLGPIMGGGTAGFMTGPLPSGIMPCGRATGAPVCVIPGGRPV
DVKACPMGGPPMDGPPMGGPPPIPPPMPILKRGSPMRGSLMVGRSRGSPM
*
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mRNA from alignment at S-dermatodea_contig10640:6772..7314+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10640.448.1 ID=mRNA_S-dermatodea_contig10640.448.1|Name=mRNA_S-dermatodea_contig10640.448.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=543bp|location=Sequence derived from alignment at S-dermatodea_contig10640:6772..7314+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGCTACCGCTCATCACGCTGCCGCCGCCGCCTCCGGGGATGCTACTGCT
GCCGCTCCACGAGCTGCTAGGGCCCATCATGGGGGGAGGCACCGCCGGGT
TTATGACGGGGCCGCTCCCAAGCGGCATCATGCCATGTGGCAGAGCGACG
GGGGCGCCGGTTTGCGTCATCCCCGGGGGCAGGCCAGTTGACGTCAAGGC
ATGCCCCATGGGCGGGCCTCCCATGGACGGGCCTCCCATGGGAGGGCCTC
CTCCCATTCCTCCCCCCATGCCCATACTTAAACGAGGATCACCCATGCGA
GGATCGCTCATGGTCGGCCGGAGCCGCGGGTCACCCATGTGAGAACCGGA
GCCACTCATGGACGAGTGGGTGCTTCCGCCCATTCCCATCCCGCCCATCA
TGCCATGGGGCATGCCGCCAGGAGCTCCGCCCATCATGCCCATATTCATT
CGTCCCGAGCGCCCGGGCATGCCCACTCCTCCCGGCATACCACCGGGCAT
GCCCCCGGTCATGCCTCCTGGCATGCCTCCGGTCATTCCTCCT
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Coding sequence (CDS) from alignment at S-dermatodea_contig10640:6772..7314+

>mRNA_S-dermatodea_contig10640.448.1 ID=mRNA_S-dermatodea_contig10640.448.1|Name=mRNA_S-dermatodea_contig10640.448.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at S-dermatodea_contig10640:6772..7314+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTACTGCTGCCGCTCCACGAGCTGCTAGGGCCCATCATGGGGGGAGG
CACCGCCGGGTTTATGACGGGGCCGCTCCCAAGCGGCATCATGCCATGTG
GCAGAGCGACGGGGGCGCCGGTTTGCGTCATCCCCGGGGGCAGGCCAGTT
GACGTCAAGGCATGCCCCATGGGCGGGCCTCCCATGGACGGGCCTCCCAT
GGGAGGGCCTCCTCCCATTCCTCCCCCCATGCCCATACTTAAACGAGGAT
CACCCATGCGAGGATCGCTCATGGTCGGCCGGAGCCGCGGGTCACCCATG
TGAATGCTACTGCTGCCGCTCCACGAGCTGCTAGGGCCCATCATGGGGGG
AGGCACCGCCGGGTTTATGACGGGGCCGCTCCCAAGCGGCATCATGCCAT
GTGGCAGAGCGACGGGGGCGCCGGTTTGCGTCATCCCCGGGGGCAGGCCA
GTTGACGTCAAGGCATGCCCCATGGGCGGGCCTCCCATGGACGGGCCTCC
CATGGGAGGGCCTCCTCCCATTCCTCCCCCCATGCCCATACTTAAACGAG
GATCACCCATGCGAGGATCGCTCATGGTCGGCCGGAGCCGCGGGTCACCC
ATGTGA
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