mRNA_S-dermatodea_contig10638.445.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10638.445.1
Unique NamemRNA_S-dermatodea_contig10638.445.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10638.445.1 vs. uniprot
Match: D8LRI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRI4_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 3.770e-10
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    4 HVTQDTDEIGFQAGARIRVLERNGEWWKGSVGGKTGL 114
            +V QDTDEIGF+ G  I VLE+  EWWKG+VGGKTGL
Sbjct:  167 YVAQDTDEIGFRVGDMIHVLEKKAEWWKGTVGGKTGL 203
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BLAST of mRNA_S-dermatodea_contig10638.445.1 vs. uniprot
Match: A0A6J1NYI9_BICAN (intersectin-1-like n=1 Tax=Bicyclus anynana TaxID=110368 RepID=A0A6J1NYI9_BICAN)

HSP 1 Score: 47.8 bits (112), Expect = 4.070e-5
Identity = 16/38 (42.11%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    1 PHVTQDTDEIGFQAGARIRVLERNGEWWKGSVGGKTGL 114
            P+V+ ++ ++ F+AG RI V+ R+G+WW G +G +TG+
Sbjct:  778 PYVSSESGDLTFEAGERIEVMRRDGDWWTGRIGIRTGI 815
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BLAST of mRNA_S-dermatodea_contig10638.445.1 vs. uniprot
Match: A0A6J1P5E1_BICAN (intersectin-2 isoform X1 n=3 Tax=Bicyclus anynana TaxID=110368 RepID=A0A6J1P5E1_BICAN)

HSP 1 Score: 47.8 bits (112), Expect = 4.070e-5
Identity = 16/38 (42.11%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    1 PHVTQDTDEIGFQAGARIRVLERNGEWWKGSVGGKTGL 114
            P+V+ ++ ++ F+AG RI V+ R+G+WW G +G +TG+
Sbjct:  355 PYVSSESGDLTFEAGERIEVMRRDGDWWTGRIGIRTGI 392
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BLAST of mRNA_S-dermatodea_contig10638.445.1 vs. uniprot
Match: UPI000C75B9EF (intersectin-1-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C75B9EF)

HSP 1 Score: 47.4 bits (111), Expect = 5.560e-5
Identity = 16/38 (42.11%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:    1 PHVTQDTDEIGFQAGARIRVLERNGEWWKGSVGGKTGL 114
            P+ +++ D++ F AG +I V  +NG+WW G++G KTG+
Sbjct:  839 PYASEEPDDLQFDAGEKIIVSAKNGDWWTGTIGDKTGV 876
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BLAST of mRNA_S-dermatodea_contig10638.445.1 vs. uniprot
Match: A0A0N1PEJ2_PAPXU (Intersectin-2 n=3 Tax=Papilio xuthus TaxID=66420 RepID=A0A0N1PEJ2_PAPXU)

HSP 1 Score: 47.4 bits (111), Expect = 5.560e-5
Identity = 16/38 (42.11%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:    1 PHVTQDTDEIGFQAGARIRVLERNGEWWKGSVGGKTGL 114
            P+V+ +  ++ F+AG RI VL R+G+WW G +G + G+
Sbjct:  940 PYVSSEPGDLTFEAGERIEVLRRDGDWWTGRIGNRNGI 977
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BLAST of mRNA_S-dermatodea_contig10638.445.1 vs. uniprot
Match: UPI001E665C6A (intersectin-1 n=2 Tax=Papilio TaxID=7145 RepID=UPI001E665C6A)

HSP 1 Score: 47.4 bits (111), Expect = 5.560e-5
Identity = 16/38 (42.11%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:    1 PHVTQDTDEIGFQAGARIRVLERNGEWWKGSVGGKTGL 114
            P+V+ +  ++ F+AG RI VL R+G+WW G +G + G+
Sbjct:  914 PYVSSEPGDLTFEAGERIEVLRRDGDWWTGRIGNRNGI 951
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BLAST of mRNA_S-dermatodea_contig10638.445.1 vs. uniprot
Match: UPI001E68BFD0 (intersectin-1 isoform X1 n=8 Tax=Maniola TaxID=111919 RepID=UPI001E68BFD0)

HSP 1 Score: 47.0 bits (110), Expect = 7.610e-5
Identity = 16/38 (42.11%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:    1 PHVTQDTDEIGFQAGARIRVLERNGEWWKGSVGGKTGL 114
            P+V+ +  ++ F+AG RI V+ R+G+WW G +G +TG+
Sbjct:  953 PYVSSEPGDLTFEAGERIEVMRRDGDWWTGRIGIRTGI 990
[Close]
BLAST of mRNA_S-dermatodea_contig10638.445.1 vs. uniprot
Match: A0A821GK51_9BILA (Hypothetical protein n=1 Tax=Rotaria socialis TaxID=392032 RepID=A0A821GK51_9BILA)

HSP 1 Score: 46.6 bits (109), Expect = 8.540e-5
Identity = 17/37 (45.95%), Postives = 26/37 (70.27%), Query Frame = 1 
Query:    1 PHVTQDTDEIGFQAGARIRVLERNGEWWKGSVGGKTG 111
            P+  +D  ++ F AG RI VL+R+G+WW G +G +TG
Sbjct:    8 PYEAKDVADLSFNAGDRIVVLQRDGDWWTGKIGDRTG 44
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10638.445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LRI4_ECTSI3.770e-1070.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6J1NYI9_BICAN4.070e-542.11intersectin-1-like n=1 Tax=Bicyclus anynana TaxID=... [more]
A0A6J1P5E1_BICAN4.070e-542.11intersectin-2 isoform X1 n=3 Tax=Bicyclus anynana ... [more]
UPI000C75B9EF5.560e-542.11intersectin-1-like n=1 Tax=Eurytemora affinis TaxI... [more]
A0A0N1PEJ2_PAPXU5.560e-542.11Intersectin-2 n=3 Tax=Papilio xuthus TaxID=66420 R... [more]
UPI001E665C6A5.560e-542.11intersectin-1 n=2 Tax=Papilio TaxID=7145 RepID=UPI... [more]
UPI001E68BFD07.610e-542.11intersectin-1 isoform X1 n=8 Tax=Maniola TaxID=111... [more]
A0A821GK51_9BILA8.540e-545.95Hypothetical protein n=1 Tax=Rotaria socialis TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10638contigS-dermatodea_contig10638:7413..7529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue7.1e-08
Seed eggNOG ortholog2880.D8LRI4
Preferred nameENAH
KEGG koko:K03099,ko:K05746
KEGG Pathwayko01521,ko01522,ko04010,ko04012,ko04013,ko04014,ko04062,ko04068,ko04072,ko04150,ko04151,ko04320,ko04360,ko04510,ko04540,ko04630,ko04650,ko04660,ko04662,ko04664,ko04714,ko04722,ko04810,ko04910,ko04912,ko04915,ko04917,ko04926,ko05034,ko05160,ko05165,ko05200,ko05205,ko05206,ko05210,ko05211,ko05213,ko05214,ko05215,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05231,map01521,map01522,map04010,map04012,map04013,map04014,map04062,map04068,map04072,map04150,map04151,map04320,map04360,map04510,map04540,map04630,map04650,map04660,map04662,map04664,map04714,map04722,map04810,map04910,map04912,map04915,map04917,map04926,map05034,map05160,map05165,map05200,map05205,map05206,map05210,map05211,map05213,map05214,map05215,map05220,map05221,map05223,map05224,map05225,map05226,map05231
EggNOG free text desc.positive regulation of caveolin-mediated endocytosis
EggNOG OGsKOG1029@1,KOG1029@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size117
Cds size117
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924167.1611948-CDS-S-dermatodea_contig10638:7412..75291622924167.1611948-CDS-S-dermatodea_contig10638:7412..7529Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10638 7413..7529 +
1694079063.6803646-CDS-S-dermatodea_contig10638:7412..75291694079063.6803646-CDS-S-dermatodea_contig10638:7412..7529Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10638 7413..7529 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10638.445.1prot_S-dermatodea_contig10638.445.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10638 7413..7529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10638.445.1

>prot_S-dermatodea_contig10638.445.1 ID=prot_S-dermatodea_contig10638.445.1|Name=mRNA_S-dermatodea_contig10638.445.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=39bp
PHVTQDTDEIGFQAGARIRVLERNGEWWKGSVGGKTGL*
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mRNA from alignment at S-dermatodea_contig10638:7413..7529+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10638.445.1 ID=mRNA_S-dermatodea_contig10638.445.1|Name=mRNA_S-dermatodea_contig10638.445.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=117bp|location=Sequence derived from alignment at S-dermatodea_contig10638:7413..7529+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTCATGTAACGCAGGACACCGATGAGATCGGTTTCCAGGCGGGGGCGAG
GATTCGGGTTCTGGAAAGGAACGGGGAGTGGTGGAAAGGATCAGTGGGCG
GCAAGACTGGCCTGTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10638:7413..7529+

>mRNA_S-dermatodea_contig10638.445.1 ID=mRNA_S-dermatodea_contig10638.445.1|Name=mRNA_S-dermatodea_contig10638.445.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=234bp|location=Sequence derived from alignment at S-dermatodea_contig10638:7413..7529+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTCATGTAACGCAGGACACCGATGAGATCGGTTTCCAGGCGGGGGCGAG
GATTCGGGTTCTGGAAAGGAACGGGGAGTGGTGGAAAGGATCAGTGGGCG
GCAAGACTGGCCTGTAACCTCATGTAACGCAGGACACCGATGAGATCGGT
TTCCAGGCGGGGGCGAGGATTCGGGTTCTGGAAAGGAACGGGGAGTGGTG
GAAAGGATCAGTGGGCGGCAAGACTGGCCTGTAA
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