mRNA_S-dermatodea_contig1063.443.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1063.443.1
Unique NamemRNA_S-dermatodea_contig1063.443.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig1063.443.1 vs. uniprot
Match: A0A6H5K4I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4I9_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 5.450e-30
Identity = 59/79 (74.68%), Postives = 65/79 (82.28%), Query Frame = 1
Query:    1 KHLVRPSDALCEAAMLAEPNLSVRMSEVTAAVLRPLLKNLPERVVEYNRRYQLAVNAIEAEAAGLIDVPRQDTRVSTVG 237
            KHLVRPSDALCEAA  +EPNLSVRMSE TAAVLRPLLK+LP RV+EYNRRY + V  +EAEA GLIDVP+Q   V  VG
Sbjct:  172 KHLVRPSDALCEAARFSEPNLSVRMSETTAAVLRPLLKSLPSRVLEYNRRYNIVVKTMEAEALGLIDVPKQHELVGAVG 250          
BLAST of mRNA_S-dermatodea_contig1063.443.1 vs. uniprot
Match: D7FSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI1_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 1.060e-29
Identity = 58/79 (73.42%), Postives = 63/79 (79.75%), Query Frame = 1
Query:    1 KHLVRPSDALCEAAMLAEPNLSVRMSEVTAAVLRPLLKNLPERVVEYNRRYQLAVNAIEAEAAGLIDVPRQDTRVSTVG 237
            KHLVRPSDALCEAA  +EPNLSVRMSE TAAVLRPLLK+LP RV+EYNR Y + V  +EAEA GLIDVP Q   V  VG
Sbjct:   40 KHLVRPSDALCEAARFSEPNLSVRMSETTAAVLRPLLKSLPSRVLEYNRIYNIVVKTMEAEAPGLIDVPEQHELVGAVG 118          
BLAST of mRNA_S-dermatodea_contig1063.443.1 vs. uniprot
Match: A0A7S3ZU99_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZU99_9STRA)

HSP 1 Score: 102 bits (253), Expect = 9.620e-24
Identity = 50/79 (63.29%), Postives = 58/79 (73.42%), Query Frame = 1
Query:    1 KHLVRPSDALCEAAMLAEPNLSVRMSEVTAAVLRPLLKNLPERVVEYNRRYQLAVNAIEAEAAGLIDVPRQDTRVSTVG 237
            KH VRP+D LCE AM   PNLS RM+EVTAAV+RPL+KNLP+RV +YNRRY   V  +  EA  +I VP QD RV TVG
Sbjct:  269 KHAVRPADELCEVAMAEMPNLSCRMNEVTAAVMRPLIKNLPQRVEDYNRRYDSVVKVLREEAGDIIVVPTQDERVGTVG 347          
BLAST of mRNA_S-dermatodea_contig1063.443.1 vs. uniprot
Match: A0A7S4E6V5_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E6V5_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 6.550e-23
Identity = 50/79 (63.29%), Postives = 56/79 (70.89%), Query Frame = 1
Query:    1 KHLVRPSDALCEAAMLAEPNLSVRMSEVTAAVLRPLLKNLPERVVEYNRRYQLAVNAIEAEAAGLIDVPRQDTRVSTVG 237
            KH VRP D LCE AM   PNLS RM+EVTAAV+RPL+KNLP+RV  YNRRY   V  +  EA  +I VP QD RV TVG
Sbjct:  266 KHAVRPPDDLCEVAMAEMPNLSCRMNEVTAAVMRPLIKNLPQRVEAYNRRYDAVVKVLREEAGDVIVVPTQDERVGTVG 344          
BLAST of mRNA_S-dermatodea_contig1063.443.1 vs. uniprot
Match: A0A8J2WEJ6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WEJ6_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.100e-22
Identity = 50/79 (63.29%), Postives = 56/79 (70.89%), Query Frame = 1
Query:    1 KHLVRPSDALCEAAMLAEPNLSVRMSEVTAAVLRPLLKNLPERVVEYNRRYQLAVNAIEAEAAGLIDVPRQDTRVSTVG 237
            KH VRP D LCE AM   PNLS RM+EVTAAV+RPL+KNLP+RV  YNRRY   V  +  EA  +I VP QD RV TVG
Sbjct:  202 KHAVRPPDDLCEVAMAEMPNLSCRMNEVTAAVMRPLIKNLPQRVEAYNRRYDAVVKVLREEAGDVIVVPTQDERVGTVG 280          
BLAST of mRNA_S-dermatodea_contig1063.443.1 vs. uniprot
Match: D7FMY1_ECTSI (Aminotransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMY1_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 7.500e-19
Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    1 KHLVRPSDALCEAAMLAEPNLSVRMSEVTAAVLRPLLKNLPERVVEYNRRYQLAVNAIEAEAAGLIDVPRQDTRVSTVG 237
            KH VR SD L E AML+E NLSVRM+E+TAAV+RPLL NLPERV +++RRYQ  V  +E +   LI+VP+     S VG
Sbjct:  268 KHSVRGSDELMEKAMLSERNLSVRMTEMTAAVIRPLLANLPERVAQFHRRYQEVVGILEEQVPDLIEVPKPLEHASVVG 346          
BLAST of mRNA_S-dermatodea_contig1063.443.1 vs. uniprot
Match: A0A7S3NJM7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJM7_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 5.970e-17
Identity = 45/79 (56.96%), Postives = 51/79 (64.56%), Query Frame = 1
Query:    1 KHLVRPSDALCEAAMLAEPNLSVRMSEVTAAVLRPLLKNLPERVVEYNRRYQLAVNAIEAEAAGLIDVPRQDTRVSTVG 237
            KHL RP D LCE AML  PNLS RMSE+TAAV RPLL NLP RV+ YN RY L  +   A    ++ VP  D R + VG
Sbjct:  249 KHLTRPDDILCEEAMLKYPNLSCRMSELTAAVARPLLANLPSRVITYNARYDLICSI--ATKNNVLKVPGHDYRCAPVG 325          
BLAST of mRNA_S-dermatodea_contig1063.443.1 vs. uniprot
Match: A0A7S3FD09_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3FD09_9VIRI)

HSP 1 Score: 73.9 bits (180), Expect = 1.250e-13
Identity = 40/80 (50.00%), Postives = 51/80 (63.75%), Query Frame = 1
Query:    1 KHLVRPSDALCEAAMLAEPNLSVRMSEVTAAVLRPLLKNL-PERVVEYNRRYQLAVNAIEAEAAGLIDVPRQDTRVSTVG 237
            KHLV+P + LCE  ML +PNLS RM+EVTAA++RPL++NL  ER   YN RY +    + A A   I VP Q   V  +G
Sbjct:  275 KHLVQPPEYLCEQYMLTKPNLSCRMTEVTAAMMRPLIRNLYSERKPRYNARYAMLCKVMAAMAGEHIFVPEQHEHVGNMG 354          
BLAST of mRNA_S-dermatodea_contig1063.443.1 vs. uniprot
Match: F0YLY5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLY5_AURAN)

HSP 1 Score: 64.3 bits (155), Expect = 3.140e-10
Identity = 38/80 (47.50%), Postives = 48/80 (60.00%), Query Frame = 1
Query:    1 KHLVRPSDA-LCEAAMLAEPNLSVRMSEVTAAVLRPLLKNLPERVVEYNRRYQLAVNAIEAEAAGLIDVPRQDTRVSTVG 237
            KH  RP D  L E AM   P LS RMSE++AA LRP + +L +RVVE NRR+ L   ++   A G + +P  D R S VG
Sbjct:  263 KHGARPEDDDLLERAMATMPYLSTRMSELSAACLRPAVASLADRVVEANRRHALIARSLGDLAGGGVVLPESDPRASCVG 342          
BLAST of mRNA_S-dermatodea_contig1063.443.1 vs. uniprot
Match: K8ECV9_9CHLO (Aminotransferase, DegT/DnrJ/EryC1/StrS family protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8ECV9_9CHLO)

HSP 1 Score: 63.5 bits (153), Expect = 5.930e-10
Identity = 36/80 (45.00%), Postives = 45/80 (56.25%), Query Frame = 1
Query:    1 KHLVRPSDALCEAAMLAEPNLSVRMSEVTAAVLRPLLKNL-PERVVEYNRRYQLAVNAIEAEAAGLIDVPRQDTRVSTVG 237
            KH   P   LCE  ML  PNLS RM+EVTAA++RPL+ NL  ER+  Y  R+ L  + I+  A   + VP     V  VG
Sbjct:  335 KHARMPPQELCEKYMLTMPNLSSRMNEVTAAMMRPLIANLYSERLPRYMERWLLITSVIDLMAGEYVSVPTSGPNVEDVG 414          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1063.443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K4I9_9PHAE5.450e-3074.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSI1_ECTSI1.060e-2973.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3ZU99_9STRA9.620e-2463.29Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S4E6V5_9STRA6.550e-2363.29Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A8J2WEJ6_9STRA1.100e-2263.29Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
D7FMY1_ECTSI7.500e-1958.23Aminotransferase n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A7S3NJM7_9STRA5.970e-1756.96Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3FD09_9VIRI1.250e-1350.00Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
F0YLY5_AURAN3.140e-1047.50Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
K8ECV9_9CHLO5.930e-1045.00Aminotransferase, DegT/DnrJ/EryC1/StrS family prot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1063contigS-dermatodea_contig1063:17597..18416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.4
Seed ortholog evalue2.4e-23
Seed eggNOG ortholog2880.D7FSI1
EggNOG free text desc.Aminotransferase, DegT DnrJ EryC1 StrS family protein
EggNOG OGs2QQV8@2759,COG0399@1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAminotransferase
Ec32 orthologEc-11_003810.1
Exons2
Model size240
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924167.029526-CDS-S-dermatodea_contig1063:17597..176751622924167.029526-CDS-S-dermatodea_contig1063:17597..17675Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1063 17598..17675 -
1694079063.5899692-CDS-S-dermatodea_contig1063:17597..176751694079063.5899692-CDS-S-dermatodea_contig1063:17597..17675Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1063 17598..17675 -
1622924167.0422108-CDS-S-dermatodea_contig1063:18257..184161622924167.0422108-CDS-S-dermatodea_contig1063:18257..18416Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1063 18258..18416 -
1694079063.6042905-CDS-S-dermatodea_contig1063:18257..184161694079063.6042905-CDS-S-dermatodea_contig1063:18257..18416Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1063 18258..18416 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1063.443.1prot_S-dermatodea_contig1063.443.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1063 17598..18416 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1063.443.1

>prot_S-dermatodea_contig1063.443.1 ID=prot_S-dermatodea_contig1063.443.1|Name=mRNA_S-dermatodea_contig1063.443.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=79bp
KHLVRPSDALCEAAMLAEPNLSVRMSEVTAAVLRPLLKNLPERVVEYNRR
YQLAVNAIEAEAAGLIDVPRQDTRVSTVG
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mRNA from alignment at S-dermatodea_contig1063:17597..18416-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1063.443.1 ID=mRNA_S-dermatodea_contig1063.443.1|Name=mRNA_S-dermatodea_contig1063.443.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=820bp|location=Sequence derived from alignment at S-dermatodea_contig1063:17597..18416- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGCACCTGGTTCGCCCGTCGGATGCTCTGTGTGAAGCCGCGATGTTGGC CGAGCCCAACCTCTCGGTGAGGATGAGCGAGGTGACCGCGGCGGTGTTGA GGCCACTCCTCAAGAACTTGCCGGAGAGGGTCGTCGAGTACAACCGAAGG TACCAGCTGGTGAGAGAGCGCGAGGGGCGCCGCGACGGCTACATTGTGCT GCGAACCTTGGGTTGTCTTTCGACGGCAGCAGGATTTTCCCGAATACCGC TTGGAGGAGAGGGAGGGGGGAACGAACAGAAGGGCTCAATCAAAACAAAA TAAAATAAAATTCACAAAAGCATGTGGTACAAAGGAAAACATCATCTTCT CGGCTCACAAAAGCACATCAAAGATACATGACCAGGATAGCGCTCAGGGC AAAGGTTCTGCTACAACAACCAGATCACATCATACATGACATGACATCAT AGCATCATTCGTAACAAGTGAGCCTCCACATATATAGGTGTAGGCTTGGA CCATATTCCCTCTTGAAAAGGTGGGACCCAAACGCTCGCTCTATGTTTTT TAAATCTTTAATTTTTAGAGGGGGGAAGGGGGGGGGCATCCGAGCGTTAC ATCATGAAGAGGAGACGTTAAAAATAATGGGGGGACAAATAGAAACATAC GTATGGCGTGTTCGCTTCCCCGGCAATGTGTGCACGCGTGTGATTGTTTA GGTTTTGACTACCAACCCCCCCGACCGTTGTGATTGGCCAGGCGGTGAAC GCGATCGAGGCAGAGGCTGCGGGGCTGATCGACGTGCCTCGACAGGACAC GCGCGTGAGCACGGTCGGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1063:17597..18416-

>mRNA_S-dermatodea_contig1063.443.1 ID=mRNA_S-dermatodea_contig1063.443.1|Name=mRNA_S-dermatodea_contig1063.443.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at S-dermatodea_contig1063:17597..18416- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGCACCTGGTTCGCCCGTCGGATGCTCTGTGTGAAGCCGCGATGTTGGC
CGAGCCCAACCTCTCGGTGAGGATGAGCGAGGTGACCGCGGCGGTGTTGA
GGCCACTCCTCAAGAACTTGCCGGAGAGGGTCGTCGAGTACAACCGAAGG
TACCAGCTGAAGCACCTGGTTCGCCCGTCGGATGCTCTGTGTGAAGCCGC
GATGTTGGCCGAGCCCAACCTCTCGGTGAGGATGAGCGAGGTGACCGCGG
CGGTGTTGAGGCCACTCCTCAAGAACTTGCCGGAGAGGGTCGTCGAGTAC
AACCGAAGGTACCAGCTGGCGGTGAACGCGATCGAGGCAGAGGCTGCGGG
GCTGATCGACGTGCCTCGACAGGACACGCGCGTGAGCACGGTCGGCGCGG
TGAACGCGATCGAGGCAGAGGCTGCGGGGCTGATCGACGTGCCTCGACAG
GACACGCGCGTGAGCACGGTCGGC
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