mRNA_S-dermatodea_contig10620.435.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10620.435.1
Unique NamemRNA_S-dermatodea_contig10620.435.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10620.435.1 vs. uniprot
Match: D8LEB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEB5_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 3.790e-18
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:    1 VLLTSYLMLGLQLAASDLEDPFGYDLSDLELNLYVANIANQCRAAFYLGEKDNYDLTLDGGGA 189
            +L+T+YLMLGLQ+AA  LEDPFG D SDL+L+ +VA IA QCRAAFYLG K+  DLTLDGGGA
Sbjct:  257 MLVTAYLMLGLQIAADHLEDPFGRDESDLQLDRFVAEIAAQCRAAFYLGSKNGADLTLDGGGA 319
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10620.435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEB5_ECTSI3.790e-1871.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10620contigS-dermatodea_contig10620:9..1443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue7.8e-14
Seed eggNOG ortholog2880.D8LEB5
EggNOG free text desc.Bestrophin, RFP-TM, chloride channel
EggNOG OGs2RXRZ@2759,COG3781@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBestrophin/UPF0187
Ec32 orthologEc-00_001620.1
Exons2
Model size423
Cds size402
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10620.435.1prot_S-dermatodea_contig10620.435.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10620 30..1443 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924166.4158676-UTR-S-dermatodea_contig10620:8..291622924166.4158676-UTR-S-dermatodea_contig10620:8..29Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10620 9..29 +
1694079063.155077-UTR-S-dermatodea_contig10620:8..291694079063.155077-UTR-S-dermatodea_contig10620:8..29Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10620 9..29 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924166.4243157-CDS-S-dermatodea_contig10620:29..1071622924166.4243157-CDS-S-dermatodea_contig10620:29..107Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10620 30..107 +
1694079063.1677024-CDS-S-dermatodea_contig10620:29..1071694079063.1677024-CDS-S-dermatodea_contig10620:29..107Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10620 30..107 +
1622924166.4321387-CDS-S-dermatodea_contig10620:1119..14431622924166.4321387-CDS-S-dermatodea_contig10620:1119..1443Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10620 1120..1443 +
1694079063.177356-CDS-S-dermatodea_contig10620:1119..14431694079063.177356-CDS-S-dermatodea_contig10620:1119..1443Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10620 1120..1443 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10620.435.1

>prot_S-dermatodea_contig10620.435.1 ID=prot_S-dermatodea_contig10620.435.1|Name=mRNA_S-dermatodea_contig10620.435.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=134bp
MLGLQLAASDLEDPFGYDLSDLELNLYVANIANQCRAAFYLGEKDNYDLT
LDGGGAGADSMPFSGSPGVRNMECNSATLPMGTSRGGRGGKGGGGGSKGS
GNNLLEWPSSPSPDTSSAASLSPSGSATEEVRSP
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mRNA from alignment at S-dermatodea_contig10620:9..1443+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10620.435.1 ID=mRNA_S-dermatodea_contig10620.435.1|Name=mRNA_S-dermatodea_contig10620.435.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1435bp|location=Sequence derived from alignment at S-dermatodea_contig10620:9..1443+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGCTGTTGACGTCGTACCTTATGCTTGGGCTACAGCTGGCCGCTTCCGA
CCTGGAAGACCCCTTTGGCTACGACCTTAGCGACCTTGAGCTAAACCTGG
TAAGTTCGTGGCACCTGGTTGTGATGCATGCGTTTTCTCTTTGTTTGGTA
GTTGTACCTTTGGCCTGCCTCCTCTCCTTCGTTGCCTCGCGATATATACA
TTTGCTGGTGCTGTCAACGGGCTCCTCTTTCACCCGGCAGTCGAACTCTG
CGAGGCGCCACGCAATTCGCAGGCAAATGCGCCACACACACACGGTTGCG
ATGCTACTATTTATTCTCGAACATGGTCAAGGAGTTGCCCCCGACGAGGC
GGCATGTACCTTAAGCGTCGGGGAGAGCGCCCCCCAAACCGAGCACACCC
CGGCGGTGTCACGTTGGGATTCTTAGTGATTTTTGGGCCAACATTAATAA
TGAGGAGAAACGCCCCGGGGCGTACAAGTATGATGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTTTTTTTTTTTTCACATATAAACGCGATGGTATACAT
ACACATCGTCGAGAATGGCGTCACCTTCTCTCAAAGAAGAACGATGCTCA
CTGCAACGAGTCGGGGTGGGGGGGGAGGGGGGGCTAAGCGATGCGGTGCT
CGGAAGGACTGTCTTTGGCATGATCTGGTTTTTGGATCGGCAGAGGCTTT
CTCCCCGGGTCGGCGTAAGCTTCCCCAAAAGCCACCTGCCCTCGCCTCTT
GTGAGTCCGCCCATATATTCCACCCAGGACCGACATGGCACTGTTGTGGT
GCAGGGAGAAATGGTTGGGGGCCTGCTCTCGGGATGTCATCGAGCCCTGT
GGAAAGCTCGGTGTACATAATTGTTTCTTCACATTGCCCCGAGGGCGTGA
CCCCCCCCTCCACCCTATGACTTCTTTTATTTTGGCAAAACATCGCCCCG
GTATCATTGAGGACACCTCGTTGAGATTCTTCTTGCGACCACGCCCCCGG
TGTGTTCCTTCCCGACGATTACGGCATAAATTGTGGGCGAACCTGTCCGT
TAACCCCCCCCTCCCCCCCTCCCCCACCACTATATCTCAATCGATTGCAC
CCTCTATCTAGTACGTGGCCAATATCGCAAACCAGTGCCGCGCCGCCTTC
TACCTCGGAGAGAAGGACAACTACGACCTCACACTCGACGGCGGTGGGGC
GGGGGCCGACTCGATGCCCTTCTCGGGATCACCAGGGGTGAGAAACATGG
AATGCAACTCGGCCACGTTGCCGATGGGTACCTCCCGGGGCGGCCGAGGA
GGAAAAGGAGGCGGAGGCGGCTCCAAGGGCAGCGGGAACAACTTGTTGGA
GTGGCCGAGCTCCCCGTCTCCCGACACTAGCTCCGCGGCCTCCCTGAGCC
CAAGCGGCAGCGCGACGGAAGAAGTCCGGTCCCCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10620:9..1443+

>mRNA_S-dermatodea_contig10620.435.1 ID=mRNA_S-dermatodea_contig10620.435.1|Name=mRNA_S-dermatodea_contig10620.435.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at S-dermatodea_contig10620:9..1443+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTTGGGCTACAGCTGGCCGCTTCCGACCTGGAAGACCCCTTTGGCTA
CGACCTTAGCGACCTTGAGCTAAACCTGATGCTTGGGCTACAGCTGGCCG
CTTCCGACCTGGAAGACCCCTTTGGCTACGACCTTAGCGACCTTGAGCTA
AACCTGTACGTGGCCAATATCGCAAACCAGTGCCGCGCCGCCTTCTACCT
CGGAGAGAAGGACAACTACGACCTCACACTCGACGGCGGTGGGGCGGGGG
CCGACTCGATGCCCTTCTCGGGATCACCAGGGGTGAGAAACATGGAATGC
AACTCGGCCACGTTGCCGATGGGTACCTCCCGGGGCGGCCGAGGAGGAAA
AGGAGGCGGAGGCGGCTCCAAGGGCAGCGGGAACAACTTGTTGGAGTGGC
CGAGCTCCCCGTCTCCCGACACTAGCTCCGCGGCCTCCCTGAGCCCAAGC
GGCAGCGCGACGGAAGAAGTCCGGTCCCCGTACGTGGCCAATATCGCAAA
CCAGTGCCGCGCCGCCTTCTACCTCGGAGAGAAGGACAACTACGACCTCA
CACTCGACGGCGGTGGGGCGGGGGCCGACTCGATGCCCTTCTCGGGATCA
CCAGGGGTGAGAAACATGGAATGCAACTCGGCCACGTTGCCGATGGGTAC
CTCCCGGGGCGGCCGAGGAGGAAAAGGAGGCGGAGGCGGCTCCAAGGGCA
GCGGGAACAACTTGTTGGAGTGGCCGAGCTCCCCGTCTCCCGACACTAGC
TCCGCGGCCTCCCTGAGCCCAAGCGGCAGCGCGACGGAAGAAGTCCGGTC
CCCG
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