mRNA_S-dermatodea_contig1062.434.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1062.434.1
Unique NamemRNA_S-dermatodea_contig1062.434.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1062.434.1 vs. uniprot
Match: A0A6H5JII3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JII3_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 2.050e-6
Identity = 45/126 (35.71%), Postives = 56/126 (44.44%), Query Frame = 3 
Query:    3 LASCYWLMEALRGDDRRGGWRSHQTSSPREDENGDGHTLFPAPSADS--------TAGHDADVDGAVGSGKARGAFGGXXXXXXXXXXXXXEFTEGRGQGEKGLGFFEFFPFLNDVTHNEMDGGSR 356
            L+SCYWLMEALR  D  G   +   +SP    + + H    + S            +  D DV G  G G                     +  EGR +G  G GF EF+PFLND THNEMDG +R
Sbjct:  121 LSSCYWLMEALRRADFTG---TPTPTSPLPRASREQHDASLSSSTPXXXXXAVCCVSDRDDDVVGDFGLGADE-----------DEPATENDAEEGR-EGGGGKGFLEFYPFLNDATHNEMDGEAR 231
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1062.434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JII3_9PHAE2.050e-635.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1062contigS-dermatodea_contig1062:11650..12008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size359
Cds size336
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924166.317858-UTR-S-dermatodea_contig1062:11649..116721622924166.317858-UTR-S-dermatodea_contig1062:11649..11672Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1062 11650..11672 +
1694079063.1089628-UTR-S-dermatodea_contig1062:11649..116721694079063.1089628-UTR-S-dermatodea_contig1062:11649..11672Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1062 11650..11672 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924166.329879-CDS-S-dermatodea_contig1062:11672..120081622924166.329879-CDS-S-dermatodea_contig1062:11672..12008Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1062 11673..12008 +
1694079063.1181903-CDS-S-dermatodea_contig1062:11672..120081694079063.1181903-CDS-S-dermatodea_contig1062:11672..12008Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1062 11673..12008 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1062.434.1prot_S-dermatodea_contig1062.434.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1062 11673..12008 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1062.434.1

>prot_S-dermatodea_contig1062.434.1 ID=prot_S-dermatodea_contig1062.434.1|Name=mRNA_S-dermatodea_contig1062.434.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=112bp
MEALRGDDRRGGWRSHQTSSPREDENGDGHTLFPAPSADSTAGHDADVDG
AVGSGKARGAFGGGGGAKDRDGGNGGEFTEGRGQGEKGLGFFEFFPFLND
VTHNEMDGGSR*
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mRNA from alignment at S-dermatodea_contig1062:11650..12008+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1062.434.1 ID=mRNA_S-dermatodea_contig1062.434.1|Name=mRNA_S-dermatodea_contig1062.434.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=359bp|location=Sequence derived from alignment at S-dermatodea_contig1062:11650..12008+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGCTTGCATCCTGCTATTGGCTGATGGAAGCACTTCGAGGGGACGATCGC
CGCGGGGGTTGGAGGTCGCACCAGACGTCGTCCCCCAGAGAGGACGAAAA
CGGAGACGGCCACACCTTGTTCCCTGCCCCTTCCGCAGATAGCACGGCGG
GCCACGATGCAGACGTTGACGGTGCTGTCGGTAGTGGAAAAGCAAGAGGT
GCCTTTGGCGGCGGAGGTGGGGCCAAAGACAGGGACGGGGGCAACGGGGG
AGAGTTCACGGAAGGACGAGGGCAGGGAGAGAAGGGGCTGGGATTCTTCG
AGTTTTTCCCGTTTCTTAACGACGTCACGCACAACGAGATGGACGGCGGG
TCGAGGTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig1062:11650..12008+

>mRNA_S-dermatodea_contig1062.434.1 ID=mRNA_S-dermatodea_contig1062.434.1|Name=mRNA_S-dermatodea_contig1062.434.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at S-dermatodea_contig1062:11650..12008+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAAGCACTTCGAGGGGACGATCGCCGCGGGGGTTGGAGGTCGCACCA
GACGTCGTCCCCCAGAGAGGACGAAAACGGAGACGGCCACACCTTGTTCC
CTGCCCCTTCCGCAGATAGCACGGCGGGCCACGATGCAGACGTTGACGGT
GCTGTCGGTAGTGGAAAAGCAAGAGGTGCCTTTGGCGGCGGAGGTGGGGC
CAAAGACAGGGACGGGGGCAACGGGGGAGAGTTCACGGAAGGACGAGGGC
AGGGAGAGAAGGGGCTGGGATTCTTCGAGTTTTTCCCGTTTCTTAACGAC
GTCACGCACAACGAGATGGACGGCGGGTCGAGGTAAATGGAAGCACTTCG
AGGGGACGATCGCCGCGGGGGTTGGAGGTCGCACCAGACGTCGTCCCCCA
GAGAGGACGAAAACGGAGACGGCCACACCTTGTTCCCTGCCCCTTCCGCA
GATAGCACGGCGGGCCACGATGCAGACGTTGACGGTGCTGTCGGTAGTGG
AAAAGCAAGAGGTGCCTTTGGCGGCGGAGGTGGGGCCAAAGACAGGGACG
GGGGCAACGGGGGAGAGTTCACGGAAGGACGAGGGCAGGGAGAGAAGGGG
CTGGGATTCTTCGAGTTTTTCCCGTTTCTTAACGACGTCACGCACAACGA
GATGGACGGCGGGTCGAGGTAA
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