mRNA_S-dermatodea_contig10619.430.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10619.430.1
Unique NamemRNA_S-dermatodea_contig10619.430.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10619.430.1 vs. uniprot
Match: A0A6H5LC46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC46_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 3.430e-43
Identity = 113/232 (48.71%), Postives = 129/232 (55.60%), Query Frame = 1 
Query:    1 QIRARYDGDEARLLSGEFPFRLAPTPSGKDAPGSARHPTGGGG------GGFSRRDHGDPRTRCSVAIDVTILSSSAERGXXXXXXXXXXXXXXXXXERD----GGSAGLVRFPCLVHAVVDVSARPTGGRRAR---------APDDAGRSSSSLER--LRLLEGYTADALFKQDTRRALDVYPGSQLRIYDPCCA---SHAGAEG--ETTLLMCTQLCEPYPSCLPPLTAP 618
            Q+RAR DGDEARLLSGEFPFR   + S     G+      G G      G  SRRD+GDPRTRCSVA+D T++  +A                    E      GG++GLV F C VH VVDVS    GG R R         A D AG SS + +   L  LEG   D LFKQDTRRA+DV PGSQLRIYDP C    +  G EG     LL+CTQLCEPYPSCLP L +P
Sbjct:  393 QVRARCDGDEARLLSGEFPFRQPSSASKSTTGGNNNSHLDGVGVXXXXSGAKSRRDYGDPRTRCSVALDATVMLPAATPRGSSVGFEGGLWGGGEGNELGQAGRGGASGLVWFSCFVHHVVDVSLG-LGGNRVRPGSRCATSAAGDAAGWSSVATDFGCLHRLEGVRVDGLFKQDTRRAVDVGPGSQLRIYDPSCVWYDAEVGGEGGRAEALLVCTQLCEPYPSCLPALPSP 623
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BLAST of mRNA_S-dermatodea_contig10619.430.1 vs. uniprot
Match: D7FXF5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXF5_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 1.080e-29
Identity = 94/205 (45.85%), Postives = 107/205 (52.20%), Query Frame = 1 
Query:    1 QIRARYDGDEARLLSGEFPFRLAPTPSGKDAPGSARHPTG-----GGG----GGFSRRDHGDPRTRCSVAIDVTILSSSAERGXXXXXXXXXXXXXXXXXERD----GGSAGLVRFPCLVHAVVDVSARPTGGRRA----RAPDDAGRSS------SSLERLRLLEGYTADALFKQDTRRALDVYPGSQLRIYDPCCASHAGAEG 546
            Q+RAR DGDEARLLSGEFPFR   + S   A  S     G     G G    GG SRRD GDPRTRC VA+D T++  +A                    E      GG  GLVRF C VH VVDVS    G R +    R     G ++      +   RL  LEG   D +FKQDTRRA+DV PGSQLRIYDPCC  +  AEG
Sbjct: 1028 QVRARCDGDEARLLSGEFPFRQPSSAS--KATTSXXXXXGHLDDVGVGXXXXGGKSRRDPGDPRTRCRVALDATVMLPAATPRGPSVGFEGGLWGGGEGNELGQAGGGGVTGLVRFSCFVHHVVDVSLSLGGSRVSPGSRRVTSAVGYAAGPSGVATDFGRLHRLEGVRVDGIFKQDTRRAVDVGPGSQLRIYDPCCVWY-DAEG 1229
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10619.430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LC46_9PHAE3.430e-4348.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXF5_ECTSI1.080e-2945.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10619contigS-dermatodea_contig10619:88..1191 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_003010.1
Exons1
Model size1104
Cds size696
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924166.1256187-CDS-S-dermatodea_contig10619:87..7831622924166.1256187-CDS-S-dermatodea_contig10619:87..783Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10619 88..783 +
1694079063.0186238-CDS-S-dermatodea_contig10619:87..7831694079063.0186238-CDS-S-dermatodea_contig10619:87..783Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10619 88..783 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924166.136287-UTR-S-dermatodea_contig10619:783..11911622924166.136287-UTR-S-dermatodea_contig10619:783..1191Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10619 784..1191 +
1694079063.0265102-UTR-S-dermatodea_contig10619:783..11911694079063.0265102-UTR-S-dermatodea_contig10619:783..1191Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10619 784..1191 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10619.430.1prot_S-dermatodea_contig10619.430.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10619 88..783 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10619.430.1

>prot_S-dermatodea_contig10619.430.1 ID=prot_S-dermatodea_contig10619.430.1|Name=mRNA_S-dermatodea_contig10619.430.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=232bp
QIRARYDGDEARLLSGEFPFRLAPTPSGKDAPGSARHPTGGGGGGFSRRD
HGDPRTRCSVAIDVTILSSSAERGGAQSSSAVGAGGGAGGGERDGGSAGL
VRFPCLVHAVVDVSARPTGGRRARAPDDAGRSSSSLERLRLLEGYTADAL
FKQDTRRALDVYPGSQLRIYDPCCASHAGAEGETTLLMCTQLCEPYPSCL
PPLTAPDASRALDCQQHDASVDAPRLGVDDR*
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mRNA from alignment at S-dermatodea_contig10619:88..1191+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10619.430.1 ID=mRNA_S-dermatodea_contig10619.430.1|Name=mRNA_S-dermatodea_contig10619.430.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1104bp|location=Sequence derived from alignment at S-dermatodea_contig10619:88..1191+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGATAAGGGCGCGGTACGACGGCGATGAAGCCCGCCTCCTCTCGGGAGA
ATTCCCGTTCCGTCTGGCGCCGACGCCCTCAGGGAAAGACGCCCCCGGCA
GCGCCAGACACCCCACCGGAGGGGGAGGGGGAGGGTTCAGCCGGAGAGAT
CACGGCGACCCGCGAACGCGCTGCAGCGTTGCGATAGACGTGACCATTCT
TTCCTCCAGTGCCGAGCGGGGTGGTGCGCAAAGCTCGTCAGCGGTAGGGG
CGGGGGGAGGTGCGGGTGGGGGGGAGCGAGACGGCGGATCGGCGGGACTG
GTGCGATTTCCGTGTCTGGTGCACGCGGTGGTGGACGTATCAGCGCGTCC
GACCGGAGGAAGGAGGGCGAGAGCTCCGGACGACGCGGGGCGTAGCTCAA
GCTCGCTGGAGCGTCTTCGCCTTTTAGAAGGCTACACGGCGGACGCTTTG
TTCAAGCAGGACACTCGTAGAGCGCTCGACGTATACCCGGGTTCGCAGTT
ACGCATTTATGACCCGTGCTGCGCCTCGCACGCGGGGGCCGAGGGGGAGA
CGACGCTGCTGATGTGCACACAGCTGTGCGAGCCGTATCCGTCCTGCTTG
CCGCCGTTAACCGCACCGGATGCTTCTCGCGCTCTCGATTGTCAGCAGCA
TGACGCCAGTGTAGACGCTCCTAGGTTAGGTGTCGATGACCGCTAGAGGG
GCTCTATGCACGAGCCTTGACGGGCAGGGCTCCCGGGCGGCATCGGTTCG
TCTGTTGCTTGCCGTGCACTTGGAGGGTGTACATTCAGTTGTAGGGAGTG
GGTTCGATGTTGTGCAGATATTTACTGCGGTTCGCCAATTTTAGGGCCCC
GTTGGTGTAGGTAATCTTGGGCGATTCACCGCTCACCTCGATACAGTATA
TGCGAAGGTGGTGTCAAATTTTATGTTATTATGTGTACTACAGCTATTAA
TTGTATGCATATGAATAGGTCGCGGGGTCTCTCTCCCTCATGCAACCGAC
CGGGGAGGCAAGGTTGCTTGTGCGCTTTTCCTGCGACACGGATTTAGCCG
TGCACAGTTCAAATGCTCTACAGTACACTGTAGGTTTGGCTAAATGAAAC
TTTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10619:88..1191+

>mRNA_S-dermatodea_contig10619.430.1 ID=mRNA_S-dermatodea_contig10619.430.1|Name=mRNA_S-dermatodea_contig10619.430.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1392bp|location=Sequence derived from alignment at S-dermatodea_contig10619:88..1191+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGATAAGGGCGCGGTACGACGGCGATGAAGCCCGCCTCCTCTCGGGAGA
ATTCCCGTTCCGTCTGGCGCCGACGCCCTCAGGGAAAGACGCCCCCGGCA
GCGCCAGACACCCCACCGGAGGGGGAGGGGGAGGGTTCAGCCGGAGAGAT
CACGGCGACCCGCGAACGCGCTGCAGCGTTGCGATAGACGTGACCATTCT
TTCCTCCAGTGCCGAGCGGGGTGGTGCGCAAAGCTCGTCAGCGGTAGGGG
CGGGGGGAGGTGCGGGTGGGGGGGAGCGAGACGGCGGATCGGCGGGACTG
GTGCGATTTCCGTGTCTGGTGCACGCGGTGGTGGACGTATCAGCGCGTCC
GACCGGAGGAAGGAGGGCGAGAGCTCCGGACGACGCGGGGCGTAGCTCAA
GCTCGCTGGAGCGTCTTCGCCTTTTAGAAGGCTACACGGCGGACGCTTTG
TTCAAGCAGGACACTCGTAGAGCGCTCGACGTATACCCGGGTTCGCAGTT
ACGCATTTATGACCCGTGCTGCGCCTCGCACGCGGGGGCCGAGGGGGAGA
CGACGCTGCTGATGTGCACACAGCTGTGCGAGCCGTATCCGTCCTGCTTG
CCGCCGTTAACCGCACCGGATGCTTCTCGCGCTCTCGATTGTCAGCAGCA
TGACGCCAGTGTAGACGCTCCTAGGTTAGGTGTCGATGACCGCTAGCAGA
TAAGGGCGCGGTACGACGGCGATGAAGCCCGCCTCCTCTCGGGAGAATTC
CCGTTCCGTCTGGCGCCGACGCCCTCAGGGAAAGACGCCCCCGGCAGCGC
CAGACACCCCACCGGAGGGGGAGGGGGAGGGTTCAGCCGGAGAGATCACG
GCGACCCGCGAACGCGCTGCAGCGTTGCGATAGACGTGACCATTCTTTCC
TCCAGTGCCGAGCGGGGTGGTGCGCAAAGCTCGTCAGCGGTAGGGGCGGG
GGGAGGTGCGGGTGGGGGGGAGCGAGACGGCGGATCGGCGGGACTGGTGC
GATTTCCGTGTCTGGTGCACGCGGTGGTGGACGTATCAGCGCGTCCGACC
GGAGGAAGGAGGGCGAGAGCTCCGGACGACGCGGGGCGTAGCTCAAGCTC
GCTGGAGCGTCTTCGCCTTTTAGAAGGCTACACGGCGGACGCTTTGTTCA
AGCAGGACACTCGTAGAGCGCTCGACGTATACCCGGGTTCGCAGTTACGC
ATTTATGACCCGTGCTGCGCCTCGCACGCGGGGGCCGAGGGGGAGACGAC
GCTGCTGATGTGCACACAGCTGTGCGAGCCGTATCCGTCCTGCTTGCCGC
CGTTAACCGCACCGGATGCTTCTCGCGCTCTCGATTGTCAGCAGCATGAC
GCCAGTGTAGACGCTCCTAGGTTAGGTGTCGATGACCGCTAG
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