mRNA_S-dermatodea_contig10611.426.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10611.426.1
Unique NamemRNA_S-dermatodea_contig10611.426.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig10611.426.1 vs. uniprot
Match: D7FKH6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKH6_ECTSI)

HSP 1 Score: 448 bits (1152), Expect = 3.910e-154
Identity = 239/317 (75.39%), Postives = 270/317 (85.17%), Query Frame = 1
Query:    1 GYLDRESMIRETQKAIRQYYKEGMYQDALEVTHRLVDQVDDHFGRAHGVYASALSDMALMMKSVGQNKEATDVYLKALEVYRTVYKGEENASFASTLHNLGMAFRAMAEESRKLEKIPLMERAAEAFERCVQIREKILTNNHPDLQLARSRLAMVQGLLGG-EKERTEARLRAALDGLQIAVGNNDASTANAMTNLALFLKGEGRYDEATELYTTALGARTELYGEKHFNVLVSMHNLSMVHHAAGREDAAVELQGKIARIGEELGMTEEEQKDGMEGVGLEDAIKLTREEGKR-PERKTGRKGQQGGRDSGTAWKP 945
            GYL+RE MIRETQKA+R+YYKEGMYQDALEV  RLVDQVDDHFGRAHGVY SALSDMALM+KS+G+++EAT+ YLKALEVYR VYKGEENASFASTLHNLGM FRAMAE+S+KLEKIPLMERAAE+FERCVQIREKILTNNHPDLQLARSRLA VQ +LGG EKE TEARLRAALDGLQ+AVGN+DASTANA TNLALFLKGEG+  EAT+LYT  L  R +LYG KHF+VLVSMHNLSM HH AGRED A++L+ +IA+IGEE+GMT EEQ +     G   A+KL +EEGK+ PE+K          DSG+ WKP
Sbjct:  126 GYLEREGMIRETQKAVREYYKEGMYQDALEVAERLVDQVDDHFGRAHGVYGSALSDMALMLKSMGRHQEATETYLKALEVYRAVYKGEENASFASTLHNLGMLFRAMAEDSKKLEKIPLMERAAESFERCVQIREKILTNNHPDLQLARSRLATVQDMLGGGEKEGTEARLRAALDGLQMAVGNDDASTANAKTNLALFLKGEGKLAEATDLYTDVLETRKKLYGRKHFDVLVSMHNLSMTHHVAGREDEAIKLRDEIAKIGEEMGMTPEEQSEASGAAG--GAVKLAQEEGKKAPEKKKN--------DSGSTWKP 432          
BLAST of mRNA_S-dermatodea_contig10611.426.1 vs. uniprot
Match: W4GGN5_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GGN5_9STRA)

HSP 1 Score: 144 bits (363), Expect = 4.300e-37
Identity = 92/256 (35.94%), Postives = 136/256 (53.12%), Query Frame = 1
Query:    4 YLDRESMIRETQKAIRQYYKEGMYQDALEVTHRLVDQVDDHFGRAHGVYASALSDMALMMKSVGQNKEATDVYLKALEVYRTVYKGEENASFASTLHNLGMAFRAMAEESRKLEKIPLMERAAEAFERCVQIREKILTNNHPDLQLARSRLAMVQGLLGGEKERTEARLRAALDGLQIAVGNNDASTANAMTNLALFLKGEGRYDEATELYTTALGARTELYGEKHFNVLVSMHNLSMVHHAAGREDAAVELQGKI 771
            Y+  ES I   Q  IR+ Y +G +   LE+     D V DHFG  H VYAS L+++ALM K++    EA   Y  AL VY++   GE +AS+A+TLHNLG  +R  A     ++K+  ++ A E FE  +++R  IL  +HPD+ ++   + M+      +K + E  L  A + L+  VG     TA A  NL +  K  G++D A EL+  A   R    G+ H   + +MHN +    A GRED A  +Q +I
Sbjct:   46 YMIVESDIAGMQHKIRELYSKGDFVSGLEMAEICRDTVRDHFGEDHPVYASTLNNLALMQKNLSLLDEAIGSYEAALRVYKSCV-GENHASWATTLHNLGGVYRLQAHNLSGMKKVEGIDHALECFEESLRVRRDILAPDHPDIAISMCNVGMLYWHTH-KKAKAEEILVEAAERLESKVGPTSPLTALAWNNLGIVYKELGKFDAAVELFAKATAVRKASLGDMHVETITTMHNWAEALRAGGREDDAAVIQKEI 299          
BLAST of mRNA_S-dermatodea_contig10611.426.1 vs. uniprot
Match: A0A397DE51_9STRA (EF-hand domain-containing protein (Fragment) n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DE51_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.400e-27
Identity = 81/226 (35.84%), Postives = 119/226 (52.65%), Query Frame = 1
Query:    4 YLDRESMIRETQKAIRQYYKEGMYQDALEVTHRLVDQVDDHFGRAHGVYASALSDMALMMKSVGQNKEATDVYLKALEVYRTVYKGEENASFASTLHNLGMAFRAMAEESRKLEKIPLMERAAEAFERCVQIREKILTNNHPDLQLARSRLAMVQGLLGGEKERTEARLRAALDGLQIAVGNNDASTANAMTNLALFLKGEGRYDEATELYTTALGARTELYGEKH 681
            Y+  ES I   Q  IR+ Y  G +   LE+     D V DHFG  H VYAS L+++ALM K++    EA   Y  AL VY++   GE +AS+A+TLHNLG  +R  A     ++K+  ++ A E FE  +++R  IL  +HPD+ ++   + M+      +K + E  L  A + L+  VG     TA A  NL +  K  G++D A EL+  A   R    G+ H
Sbjct:   43 YMIVESDIAGMQHKIRELYSYGDFVSGLEMAEICRDTVRDHFGEDHPVYASTLNNLALMQKNLSLLDEAIGSYEAALRVYKSCV-GENHASWATTLHNLGGVYRLQAHNLSGMKKVEGIDHALECFEESLRVRRDILAPDHPDIAISMCNVGMLYWHTH-KKAKAEEILVEAAERLESKVGPTSPLTALAWNNLGIVYKELGKFDAAVELFAKATAVRKASLGDMH 266          
BLAST of mRNA_S-dermatodea_contig10611.426.1 vs. uniprot
Match: A0A024UG34_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UG34_9STRA)

HSP 1 Score: 111 bits (278), Expect = 7.890e-25
Identity = 79/256 (30.86%), Postives = 122/256 (47.66%), Query Frame = 1
Query:    4 YLDRESMIRETQKAIRQYYKEGMYQDALEVTHRLVDQVDDHFGRAHGVYASALSDMALMMKSVGQNKEATDVYLKALEVYRTVYKGEENASFASTLHNLGMAFRAMAEESRKLEKIPLMERAAEAFERCVQIREKILTNNHPDLQLARSRLAMVQGLLGGEKERTEARLRAALDGLQIAVGNNDASTANAMTNLALFLKGEGRYDEATELYTTALGARTELYGEKHFNVLVSMHNLSMVHHAAGREDAAVELQGKI 771
            Y+  E+ I   QK IR+ Y +G +   LE+     D V DHFG  H VYAS L+++ALM K++ Q  EA + Y  AL VY++   GE +AS+A+TLHNLG  +R  A     ++K+  ++ A E FE  +++R +IL  +HPD+ ++   + M+      +KE+ E  L  A++ L+  VG                                                  +MHN +    A+GR+D A E+Q  I
Sbjct:   45 YMVVEADIAGMQKKIRELYSKGDFVSGLEMAEICRDAVRDHFGDDHPVYASTLNNLALMQKNLSQLDEAIESYEAALRVYKSCV-GENHASWATTLHNLGGVYRLQAHSLSGMKKVEGLDHALECFEESLRVRREILAADHPDIAMSMCNVGMLYWHTH-KKEKAEEMLVEAVERLEAKVGATSPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTMHNWAEALRASGRDDDAAEIQKTI 298          
BLAST of mRNA_S-dermatodea_contig10611.426.1 vs. uniprot
Match: A0A485LCH3_9STRA (Aste57867_19411 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LCH3_9STRA)

HSP 1 Score: 110 bits (274), Expect = 3.250e-24
Identity = 78/255 (30.59%), Postives = 122/255 (47.84%), Query Frame = 1
Query:   16 ESMIRETQKAIRQYYKEGMYQDALEVTHRLVDQVDDHFGRAHGVYASALSDMALMMKSVGQNKEATDVYLKALEVYRTVYKGEENASFASTLHNLGMAFRAMAEESRKLEKIPLMERAAEAFERCVQIREKILTNNHPDLQLARSRLAMVQGLLGGEKERTEARLRAALDGLQIAVGNNDASTANAMTNLALFLKGEGRYDEATELYTTALGARTELYGEKHFNVLVSMHNLSMVHHAAGREDAAVELQGKIARI 780
            ES I   Q+ IR++Y +G +   LE+     D V  HFG  H VYAS L++MALM K++   +E+   Y  AL VY+    GE +AS+A+TLHNLG   R  +     ++KI  ++ A E FE  +++R  IL  +HPD+ ++   + ++      +K + E  L  A++ L+  VG +   TA A                                       + +MHNL+    AAGR+D A ++Q  I  +
Sbjct:   56 ESEIAGMQQKIREFYSKGDFVSGLEIAEICRDTVKVHFGEEHPVYASTLNNMALMQKNLSLLEESIATYEHALRVYKACV-GENHASWATTLHNLGGVHRLHSHALTGMKKIESLDLALECFEESLRVRRDILAADHPDIAISMCNVGILYWHTH-KKAKAEDMLVDAVERLEAKVGPSSPLTALAYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVETITTMHNLAETLRAAGRDDEATKIQEAILEL 308          
BLAST of mRNA_S-dermatodea_contig10611.426.1 vs. uniprot
Match: A0A1V9Z3R8_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z3R8_9STRA)

HSP 1 Score: 106 bits (265), Expect = 5.210e-22
Identity = 61/181 (33.70%), Postives = 111/181 (61.33%), Query Frame = 1
Query:    4 YLDRESMIRETQKAIRQYYKEGMYQDALEVTHRLVDQVDDHFGRAHGVYASALSDMALMMKSVGQNKEATDVYLKALEVYRTVYKGEENASFASTLHNLGMAFRAMAEESRKLEKIPLMERAAEAFERCVQIREKILTNNHPDLQLARSRLAMVQGLLGGEKERTEARLRAALDGLQIAVG 546
            +++ E+ I   Q+ IR++Y +G ++ AL++     D V +HFG  H VYAS L+++ALM K++ +  EA + Y +AL VY+    GE +ASFA+T+HNLG  +R  +     ++K+  M+ A E F+  ++IR++ L  +HPD+ ++ + + M+      +K++ E  +  A++ LQ  +G
Sbjct:  271 FVEVENDIAGMQQKIREFYTQGDFESALDIAEICRDNVKEHFGTEHPVYASTLNNIALMQKNLSKLTEAIETYEEALRVYKECV-GENHASFATTMHNLGGVYRLQSHSLSGMKKVEAMDYALEYFQESLRIRQENLAPDHPDVAVSMTNVGMLHWHTH-KKDKGEDMVVEAMERLQKKLG 449          
BLAST of mRNA_S-dermatodea_contig10611.426.1 vs. uniprot
Match: A0A2D4CBT8_PYTIN (rRNA adenine N(6)-methyltransferase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBT8_PYTIN)

HSP 1 Score: 93.6 bits (231), Expect = 1.790e-17
Identity = 62/189 (32.80%), Postives = 98/189 (51.85%), Query Frame = 1
Query:    1 GYLDRESMIRETQKAIRQYYKEGMYQDALEVTHRLVDQVDDHFGRAHGVYASALSDMALMMKSVGQNKEATDVYLKALEVYRTVYKGEENASFASTLHNLGMAFRAMAEESRKLEKIPLMERAAEAFERCVQIREKILTNNHPDLQLARSRLAMVQGLLGGEKERTEARLRAALDGLQIAVGNNDASTA 567
             Y+  E  I   Q+ IR  Y +G +QDALEV  +  D V  HFG +H VYAS ++++ALM K++GQ +EA + Y  AL VY+                      +A+A   + +E++  + RA + FE  ++IR+ +L   HPD+ L+   L ++      + E+  A L+ AL  L+  VG +   TA
Sbjct:   64 NYVQVEQDIAAMQREIRDAYSKGSFQDALEVGLQCRDLVKSHFGESHPVYASTITNIALMYKNMGQVEEAIESYEFALRVYKXXXXXXXXXXXXXXXXXXXXX-QALAHGVKGMERVQALHRAQDCFEESLKIRKLLLEPGHPDIALSMCNLGIIHWH-NKQAEKAVATLKDALQALEARVGKDSTLTA 250          
BLAST of mRNA_S-dermatodea_contig10611.426.1 vs. uniprot
Match: A0A0P1AF21_PLAHL (Kinesin light chain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AF21_PLAHL)

HSP 1 Score: 89.7 bits (221), Expect = 8.670e-17
Identity = 64/196 (32.65%), Postives = 95/196 (48.47%), Query Frame = 1
Query:    1 GYLDRESMIRETQKAIRQYYKEGMYQDALEVTHRLVDQVDDHFGRAHGVYASALSDMALMMKSVGQNKEATDVYLKALEVYRTVYKGEENASFASTLHNLGMAFRAMAEESRKLEKIPLMERAAEAFERCVQIREKILTNNHPDLQLARSRLAMVQGLLGGEKERTEARLRAALDGLQIAVGNNDASTANAMTNLA 588
             Y+  E  I   Q+ IR  Y  G YQ ALEV  +  D V  HFG  H VYAS ++++ALM K++GQ +EA + Y  AL+ Y+                            +  +E++  + RA E FE  ++IR +IL   H D+ L+ S + ++      + ++  A L  A+D L+  VG N   TA A  NLA
Sbjct:   57 SYVQVEQNIASMQREIRDAYNSGDYQAALEVGFQCRDLVKSHFGENHPVYASTITNIALMYKNLGQTEEAIESYEFALQTYKXXXXXXXXXXXXXXXXXXXXXXXXSI-STAGMERVTALHRALECFEESLKIRREILEPGHADIALSMSNIGVIYWQ-NKQPDKAFAALIEAVDLLEKKVGANSVLTALAKNNLA 250          
BLAST of mRNA_S-dermatodea_contig10611.426.1 vs. uniprot
Match: A0A3L6VBZ1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VBZ1_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 9.510e-16
Identity = 52/127 (40.94%), Postives = 72/127 (56.69%), Query Frame = 1
Query:    4 YLDRESMIRETQKAIRQYYKEGMYQDALEVTHRLVDQVDDHFGRAHGVYASALSDMALMMKSVGQNKEATDVYLKALEVYRTVYKGEENASFASTLHNLGMAFRAMAEESRKLEKIPLMERAAEAFE 384
            Y+  ES I   Q  IR+ Y  G +   LE+     D V DHFG  H VYAS L+++ALM K++    EA   Y  AL VY++   GE +AS+A+TLHNLG  +R  A     ++K+  ++ A E FE
Sbjct:   46 YMIVESDIAGMQHKIRELYSYGDFVSGLEMAEICRDTVRDHFGEDHPVYASTLNNLALMQKNLSLLDEAIGSYEAALRVYKSCV-GENHASWATTLHNLGGVYRLQAHNLSGMKKVEGIDHALECFE 171          
BLAST of mRNA_S-dermatodea_contig10611.426.1 vs. uniprot
Match: A0A3R6YC42_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6YC42_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.420e-15
Identity = 70/244 (28.69%), Postives = 104/244 (42.62%), Query Frame = 1
Query:   40 KAIRQYYKEGMYQDALEVTHRLVDQVDDHFGRAHGVYASALSDMALMMKSVGQNKEATDVYLKALEVYRTVYKGEENASFASTLHNLGMAFRAMAEESRKLEKIPLMERAAEAFERCVQIREKILTNNHPDLQLARSRLAMVQGLLGGEKERTEARLRAALDGLQIAVGNNDASTANAMTNLALFLKGEGRYDEATELYTTALGARTELYGEKHFNVLVSMHNLSMVHHAAGREDAAVELQGKI 771
            K IR+ Y +G +   LE+     D V DHFG  H VYAS L+++ALM K++ Q  EA + Y  AL VY++   GE +AS+A+TLHNLG  +R  A     +                    +KIL  +HPD+ ++   + M+      +KE+ E  L  A++ L+  VG                                                  +MHN +    A+GR+D A E+Q  I
Sbjct:  149 KKIRELYSKGDFVSGLEMAEICRDAVRDHFGDDHPVYASTLNNLALMQKNLSQLDEAIESYEAALRVYKSCV-GENHASWATTLHNLGGVYRLQAHSLSGM--------------------KKILAADHPDIAMSMCNVGMLYWHTH-KKEKAEEMLVEAVERLEAKVGATSPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMHNWAEALRASGRDDDAAEIQKTI 370          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10611.426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKH6_ECTSI3.910e-15475.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W4GGN5_9STRA4.300e-3735.94Uncharacterized protein n=5 Tax=Aphanomyces astaci... [more]
A0A397DE51_9STRA1.400e-2735.84EF-hand domain-containing protein (Fragment) n=5 T... [more]
A0A024UG34_9STRA7.890e-2530.86Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A485LCH3_9STRA3.250e-2430.59Aste57867_19411 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9Z3R8_9STRA5.210e-2233.70Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A2D4CBT8_PYTIN1.790e-1732.80rRNA adenine N(6)-methyltransferase n=1 Tax=Pythiu... [more]
A0A0P1AF21_PLAHL8.670e-1732.65Kinesin light chain n=1 Tax=Plasmopara halstedii T... [more]
A0A3L6VBZ1_9STRA9.510e-1640.94Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A3R6YC42_9STRA1.420e-1528.69Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10611contigS-dermatodea_contig10611:5094..7991 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score441.8
Seed ortholog evalue2.7e-121
Seed eggNOG ortholog2880.D7FKH6
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-12_002030.1
Exons5
Model size963
Cds size942
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10611.426.1prot_S-dermatodea_contig10611.426.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10611 5094..7970 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924165.787456-CDS-S-dermatodea_contig10611:5093..54001622924165.787456-CDS-S-dermatodea_contig10611:5093..5400Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10611 5094..5400 -
1694079062.7870126-CDS-S-dermatodea_contig10611:5093..54001694079062.7870126-CDS-S-dermatodea_contig10611:5093..5400Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10611 5094..5400 -
1622924165.808134-CDS-S-dermatodea_contig10611:6002..62501622924165.808134-CDS-S-dermatodea_contig10611:6002..6250Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10611 6003..6250 -
1694079062.7992904-CDS-S-dermatodea_contig10611:6002..62501694079062.7992904-CDS-S-dermatodea_contig10611:6002..6250Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10611 6003..6250 -
1622924165.819049-CDS-S-dermatodea_contig10611:6708..68791622924165.819049-CDS-S-dermatodea_contig10611:6708..6879Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10611 6709..6879 -
1694079062.809403-CDS-S-dermatodea_contig10611:6708..68791694079062.809403-CDS-S-dermatodea_contig10611:6708..6879Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10611 6709..6879 -
1622924165.8291428-CDS-S-dermatodea_contig10611:7206..73651622924165.8291428-CDS-S-dermatodea_contig10611:7206..7365Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10611 7207..7365 -
1694079062.8170614-CDS-S-dermatodea_contig10611:7206..73651694079062.8170614-CDS-S-dermatodea_contig10611:7206..7365Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10611 7207..7365 -
1622924165.8439434-CDS-S-dermatodea_contig10611:7913..79701622924165.8439434-CDS-S-dermatodea_contig10611:7913..7970Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10611 7914..7970 -
1694079062.8270526-CDS-S-dermatodea_contig10611:7913..79701694079062.8270526-CDS-S-dermatodea_contig10611:7913..7970Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10611 7914..7970 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924165.8576598-UTR-S-dermatodea_contig10611:7970..79911622924165.8576598-UTR-S-dermatodea_contig10611:7970..7991Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10611 7971..7991 -
1694079062.8380804-UTR-S-dermatodea_contig10611:7970..79911694079062.8380804-UTR-S-dermatodea_contig10611:7970..7991Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10611 7971..7991 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10611.426.1

>prot_S-dermatodea_contig10611.426.1 ID=prot_S-dermatodea_contig10611.426.1|Name=mRNA_S-dermatodea_contig10611.426.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=314bp
MIRETQKAIRQYYKEGMYQDALEVTHRLVDQVDDHFGRAHGVYASALSDM
ALMMKSVGQNKEATDVYLKALEVYRTVYKGEENASFASTLHNLGMAFRAM
AEESRKLEKIPLMERAAEAFERCVQIREKILTNNHPDLQLARSRLAMVQG
LLGGEKERTEARLRAALDGLQIAVGNNDASTANAMTNLALFLKGEGRYDE
ATELYTTALGARTELYGEKHFNVLVSMHNLSMVHHAAGREDAAVELQGKI
ARIGEELGMTEEEQKDGMEGVGLEDAIKLTREEGKRPERKTGRKGQQGGR
DSGTAWKPGKRKK*
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mRNA from alignment at S-dermatodea_contig10611:5094..7991-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10611.426.1 ID=mRNA_S-dermatodea_contig10611.426.1|Name=mRNA_S-dermatodea_contig10611.426.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2898bp|location=Sequence derived from alignment at S-dermatodea_contig10611:5094..7991- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCTACCTGGACCGCGAGAGCATGATTCGAGAGACCCAGAAGGCGATTCG GCAGTACTACAAGGAGGGCATGTATCAGGTGCGACTGCGTAGAGTATGCA TCAGGTCATGGCGTGGATCATTCTGCCTCGTACATAGAAATGGATGCTGG ACGATTGTTCTCCTTGAAAATATATCTCTGGCGCGGTGCGGTTGCAAGCT CTCCTCACAACGGCAATGTAGAATCAAGAATCAAAGACAACTTGCCCCAA GCGAACGAAAACGCCCACCAAGTAGGACAGGTTTCGAGTCTGCCCAAGTT GCACGTGGGGGAGACATGACGCTGTCCATTGCTCGGCTTCACATTCAAGT GAGCAAGTCAACCCTAAACACTGTGTAGCAAAATCTCACGCTCCTGATCA CGCCAAGGGCAAGTAGTTTCGTCGCCCATACTGCGCAACAACCTCAGGCC CAGTCGCCTCCCTGCTGCTGTGTCACAAATGGACATTTCTAGCTGAAGCA TCTCCGAATCTCCTGCGTGATGATGCGATCATGTCCTCTGTTGGCGAATC GGCTTCCGCACCATTCGAGGCTGATGCTAACCGTTCGAGGCTGATGTTAA CCGACCGTCCTTTGTTCGCGCAACAGGACGCTCTGGAGGTCACCCACCGA TTAGTAGATCAGGTGGACGATCACTTCGGGAGGGCTCACGGCGTCTACGC CAGCGCTCTGAGCGATATGGCGCTCATGATGAAGTCCGTGGGACAGAATA AGGAGGCCACCGACGTTTATCTCAAGGCTCTCGAGGTATTCCTTGCATGC CATGTGTTTGCGTCGCACTGCTGTTGGCTTAGGTCTCCTTGGTTTCTTAC ATCGACGTGTGCCGCCACATTGCTTGGTACTGCTCTGTCATGCTGCCGCT GTAACGCCGCCGCCGCCGCCCATTCGCGCTCGAGTTTATTCAACTGTCGA GGCACCATTCCCCGAGGTACGCGATAACCCACAGGAAATTACCACCAGTG TGCTTCGATCAAGCCTGAAAACAACCGCCTTGACCTATGAGACATCTTCC AACACGCTCTCCATTTGCTTTTTGGCCCCCCACACCCCTCCTGGGTTTAT TGCTGCTGATAGGTTTACCGGACAGTATACAAGGGCGAGGAGAACGCCTC GTTTGCAAGCACCCTGCATAACCTTGGCATGGCATTCCGTGCAATGGCGG AGGAGTCGAGAAAGCTGGAAAAAATACCGCTCATGGAGCGCGCTGCTGAG GCATTCGAGCGGTGTGTCCAGATACGCGAGAAGGTGATTTAGAGAACAAG GAGGATTGTGTTCTTTGCAGGTTTCAGTGGCCATATTTTGTGTTATTTTC GATGGAACGGAGCTTGCCCATGCGCATTTGAAGCGTTACGGGGGTAGGCC AGGGGTGGTAGATTTCCGTCAGTTGTCGCGTGGCTTTCCCGTGCTATCGA CGTTTATCACGAAGGGATCGGGGGGTTTCCATTTGCGTGCCCGGGTTTCT TCCGTTGTCCGAATATTCGTTTCGTGTGTTTCTGTTTTACTCTGAGTTCT CAAGATAAACACAAACATGACGGTGCACTCCTTCCTGCTTCACTTCCTGC AAGAGGTCGAAAGGGAAACAAACAAAGGACTTTGGCCCGCCGCTCGTACG CACAGAAGATGTTCAAGGGACGCGCGAGAGCGGTTGCCTCTTGTTCTTTT GTTTCCAACCTGCCTGCTGCCTTCGTACCATCCGCTGCCAGATCTTGACC AACAACCACCCGGACCTGCAACTGGCACGGAGCCGACTGGCGATGGTGCA GGGGTTGCTTGGGGGCGAAAAGGAGAGGACGGAGGCTAGACTAAGGGCGG CGTTGGACGGCCTTCAGATAGCGGTGGGGAACAATGATGCAAGCACGGCC AACGCAATGACCAACCTCGCGTTGTTCTTGAAGGGCGAGGGTCGGTACGA TGAGGCGACGGAGCTGTACACCACTGCTCTAGGAGCTAGGTGCGGGGACC TCGGCTTTGTCGTGGGGAGCGTCTGTGGCGTTGTGCCACGGAGGGCGTTA GGTCTGCCCTTTGTCATGACAGGGGATTCCAGCATGTGACAACATGGAAT CCGGTGCTGAAGGCAACATACTCCGTGACCGGGGCGAGCTCATGACCTGT CCCTGCTTTGTGACAAATGTTTGCAAACGTTAAGACGGTACGGGTAGCGA CTGCCACTCCGCAGCTTCAAGTCTAGCTTGTTGGCCCTGCCGCACGTGGC TCAGTAATTTTTTTGTCCCTGGTTGTTTAAAAATCATTCACAACGTTGGG TTTCCGGGTCGGCCTCTTTCTAGGAACTCAACGACGTGTGCCGCGTACGT TCTAGCAGCGCCGCGCGAGTTTGAACGATCGCCGCGCGGTTCGGTAAATA CAGAGGCACACAATACAGAGGCACACACTGTTTATTTGCATGGCAGCAAG AGGTATGAGGACAGAGCTGTCAATACTACTATCCTCTCAATAATATCCAC CGTTGAGCCTGCGCTGCAGCGCGGAGCTGCTCGAGAATTAACACGCCTGA TCCTCTCTGTCCGGCACTCTCAACGCCCTTCTAATGCGTAGGACCGAGCT CTACGGCGAGAAGCACTTCAATGTGCTGGTGTCCATGCACAACCTGTCAA TGGTGCACCACGCCGCGGGGCGAGAAGACGCAGCAGTTGAGCTGCAAGGA AAGATCGCTAGGATAGGGGAGGAGTTGGGGATGACGGAGGAGGAACAGAA GGATGGTATGGAGGGGGTAGGGTTGGAGGATGCGATAAAGTTGACGCGGG AAGAGGGGAAGCGGCCAGAGAGGAAGACGGGGCGGAAGGGGCAGCAGGGC GGTCGCGATTCCGGCACGGCGTGGAAACCTGGGAAGAGAAAGAAGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10611:5094..7991-

>mRNA_S-dermatodea_contig10611.426.1 ID=mRNA_S-dermatodea_contig10611.426.1|Name=mRNA_S-dermatodea_contig10611.426.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1884bp|location=Sequence derived from alignment at S-dermatodea_contig10611:5094..7991- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATTCGAGAGACCCAGAAGGCGATTCGGCAGTACTACAAGGAGGGCAT
GTATCAGATGATTCGAGAGACCCAGAAGGCGATTCGGCAGTACTACAAGG
AGGGCATGTATCAGGACGCTCTGGAGGTCACCCACCGATTAGTAGATCAG
GTGGACGATCACTTCGGGAGGGCTCACGGCGTCTACGCCAGCGCTCTGAG
CGATATGGCGCTCATGATGAAGTCCGTGGGACAGAATAAGGAGGCCACCG
ACGTTTATCTCAAGGCTCTCGAGGACGCTCTGGAGGTCACCCACCGATTA
GTAGATCAGGTGGACGATCACTTCGGGAGGGCTCACGGCGTCTACGCCAG
CGCTCTGAGCGATATGGCGCTCATGATGAAGTCCGTGGGACAGAATAAGG
AGGCCACCGACGTTTATCTCAAGGCTCTCGAGGTTTACCGGACAGTATAC
AAGGGCGAGGAGAACGCCTCGTTTGCAAGCACCCTGCATAACCTTGGCAT
GGCATTCCGTGCAATGGCGGAGGAGTCGAGAAAGCTGGAAAAAATACCGC
TCATGGAGCGCGCTGCTGAGGCATTCGAGCGGTGTGTCCAGATACGCGAG
AAGGTTTACCGGACAGTATACAAGGGCGAGGAGAACGCCTCGTTTGCAAG
CACCCTGCATAACCTTGGCATGGCATTCCGTGCAATGGCGGAGGAGTCGA
GAAAGCTGGAAAAAATACCGCTCATGGAGCGCGCTGCTGAGGCATTCGAG
CGGTGTGTCCAGATACGCGAGAAGATCTTGACCAACAACCACCCGGACCT
GCAACTGGCACGGAGCCGACTGGCGATGGTGCAGGGGTTGCTTGGGGGCG
AAAAGGAGAGGACGGAGGCTAGACTAAGGGCGGCGTTGGACGGCCTTCAG
ATAGCGGTGGGGAACAATGATGCAAGCACGGCCAACGCAATGACCAACCT
CGCGTTGTTCTTGAAGGGCGAGGGTCGGTACGATGAGGCGACGGAGCTGT
ACACCACTGCTCTAGGAGCTAGATCTTGACCAACAACCACCCGGACCTGC
AACTGGCACGGAGCCGACTGGCGATGGTGCAGGGGTTGCTTGGGGGCGAA
AAGGAGAGGACGGAGGCTAGACTAAGGGCGGCGTTGGACGGCCTTCAGAT
AGCGGTGGGGAACAATGATGCAAGCACGGCCAACGCAATGACCAACCTCG
CGTTGTTCTTGAAGGGCGAGGGTCGGTACGATGAGGCGACGGAGCTGTAC
ACCACTGCTCTAGGAGCTAGGACCGAGCTCTACGGCGAGAAGCACTTCAA
TGTGCTGGTGTCCATGCACAACCTGTCAATGGTGCACCACGCCGCGGGGC
GAGAAGACGCAGCAGTTGAGCTGCAAGGAAAGATCGCTAGGATAGGGGAG
GAGTTGGGGATGACGGAGGAGGAACAGAAGGATGGTATGGAGGGGGTAGG
GTTGGAGGATGCGATAAAGTTGACGCGGGAAGAGGGGAAGCGGCCAGAGA
GGAAGACGGGGCGGAAGGGGCAGCAGGGCGGTCGCGATTCCGGCACGGCG
TGGAAACCTGGGAAGAGAAAGAAGTGAGACCGAGCTCTACGGCGAGAAGC
ACTTCAATGTGCTGGTGTCCATGCACAACCTGTCAATGGTGCACCACGCC
GCGGGGCGAGAAGACGCAGCAGTTGAGCTGCAAGGAAAGATCGCTAGGAT
AGGGGAGGAGTTGGGGATGACGGAGGAGGAACAGAAGGATGGTATGGAGG
GGGTAGGGTTGGAGGATGCGATAAAGTTGACGCGGGAAGAGGGGAAGCGG
CCAGAGAGGAAGACGGGGCGGAAGGGGCAGCAGGGCGGTCGCGATTCCGG
CACGGCGTGGAAACCTGGGAAGAGAAAGAAGTGA
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