mRNA_S-dermatodea_contig10610.424.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10610.424.1
Unique NamemRNA_S-dermatodea_contig10610.424.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig10610.424.1 vs. uniprot
Match: A0A6H5J7I8_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7I8_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 1.980e-50
Identity = 215/543 (39.59%), Postives = 257/543 (47.33%), Query Frame = 1 
Query:    1 QGFDAFGEEVIKLAGDAKRFSPSRLPPAWVQADRLVKLKRAEGRSIMSVADLIADLRRECFGGGVAAGSGEGSEGWEDSRNAVLSTASLIFGGLLNWLNDTSEVVYFNKKGLDKFVILHPLHLMQAIKLIVRRDLKDTLGNLLSDHRDTEH----RRLGEAPPPHAAVATGAVSAPSPSEYPPLTPSPSGGHKHRASTGGFHPAARPTTTPPAATTGR----HAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGGRTSRRYSRNLRAGGVGGRGRGGVGSGVPAGRAVGAGGWGEEGRS----PPVGPAP---SPTGGGPESGYSRYPLGVGRAGSISPSDPAGSPAAKTPPQPSRPFSYMESLVSGVEGISGVSDGSGNREKQPQVLG-GVAARRGGHPRTPPTQAAAVAAAEPTAVARKSLSDRDEVNLLSGTVRRAVVDALLEPLAELRWDAQAREFLIRLLQESCVLVKMAPKKPSGAGTGVD----------VRRAQPISRSRSAESAVLARLPNKKEEEDMYFIPCLLPVR 1551
            QGF  F E+V+ LAGDAKRF PSRLPP W +ADRLVK +R EG  I+SV DL+  LR    G   AA +G+G + WEDSRNAV+ST        L WLNDTSEVVYFNK GLD+FVILHP HLM AIK +VRRDLK+ L  L+            +RL + P     +     S P PS+YPPL PS +     R ++G    AA P      A+ G      AA A XXXXXXXXXXXX           XXXXXXX                               A   + AG WG         P VG +P   S    GP      +   VG   S++P+ PA      + P P      + +            D  G R    + L  G A   G               + P  V    L+ RDE  L  G V RA +DALLEPLAE   +   REFLIRL QESCVLVK     PS   TG            V R+Q +  + S +SA  A     +E+E  YFIPCLLP R
Sbjct: 1161 QGFREFREQVLNLAGDAKRFPPSRLPPTWWKADRLVKQRREEGHHIISVGDLVVGLRDGVGGEVPAAPAGDG-QSWEDSRNAVVST--------LEWLNDTSEVVYFNKPGLDEFVILHPRHLMSAIKQVVRRDLKEELSTLVRHXXXXXXXXXXQRLLDTPTMPTLLPQ--TSPPCPSDYPPLAPSST--PSSRRASGQGQRAAAPGAPRSQASKGEPPSLEAAPAAXXXXXXXXXXXXAPAGSENARKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAPHQI-AGAWGXXXXXXXNVPVVGSSPASASAATAGPNGDGGSWAAAVGYL-SVAPA-PARQAGDVSNPSP------VTTXXXXXXXXXXXXDNDGKRPSYLETLSKGAAVDSGXXXXXXXXXXXXXGGSSPAPVPEAVLTYRDEQRLDDGFVSRAAIDALLEPLAEFNCNRLEREFLIRLFQESCVLVKATDGPPSRPETGKGAAKVKGPPRGVVRSQSMGPTGSKKSASAAA---SREQEVEYFIPCLLPTR 1678
[Close]
BLAST of mRNA_S-dermatodea_contig10610.424.1 vs. uniprot
Match: D7FWK1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK1_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 5.310e-39
Identity = 203/530 (38.30%), Postives = 241/530 (45.47%), Query Frame = 1 
Query:    1 QGFDAFGEEVIKLAGDAKRFSPSRLPPAWVQADRLVKLKRAEGRSIMSVADLIADLRRECFGGGVAAGSGEGSEGWEDSRNAVLSTASLIFGGLLNWLNDTSEVVYFNKKGLDKFVILHPLHLMQAIKLIVRRDLKDTLGNLLSDHRDTEHRRLGEAPPPHAAVATGAVSAPSPSEYPPLTPSPSGGHKHRASTGGFHPAARPTTTPPAATTGRHAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGGRTSRRYSRNLRAGGVGGRGRGGVGSGVPAGRAVGAGGWGEEG----RSPPVGPAPSPTG-GGPESGYSRYPLGVGRAGSISPSDPAGSPAAKTPPQPSRPFSYMESLVSGVEGISGVSDGSGNREKQPQVLG-GVAARRGGHPRTPPTQAAAVAAAEPTAVARKSLSDRDEVNLLSGTVRRAVVDALLEPLAELRWDAQAREFLIRLLQESCVLVKMAPKKPSGAGTGVDVRRA--QP--ISRSRSAE---SAVLARLPNKKEEEDMYFIPCLLPVR 1551
            QGF  F E+V+ LAGD KRF PSRLPP W +ADRLVK +R EG  I+SV DL+  LR +  GG V+A      + WEDSRNAV+ST        L WLNDTSEVVYFNK GLD+FVILHP HLM AIK +VR             +   + +R      P +  + G  S+        L  +P+                                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         S+ +                        AG W          P VG +P+PT   GP  G      G   A ++     A +PA +     S P     +            D  G R    + L  G A                   + P  V    L+ RDE  L  G V RA VDALLEPLAE   +   REFLIRL QESCVLVK     PS   TG    +   QP  + RS+S E   S   A     +E+E  YFIPCLLP R
Sbjct: 1190 QGFREFREQVLNLAGDGKRFPPSRLPPTWWKADRLVKQRREEGHHIISVGDLVVGLR-DGVGGEVSASPAGDGQSWEDSRNAVVST--------LEWLNDTSEVVYFNKPGLDEFVILHPRHLMSAIKQVVR-------------NASGQGQRAAAPGAPRSQESKGEPSS--------LEAAPAAXXXXXXXXXXXXXXXX-----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGASQQI------------------------AGAWXXXXXXXXNGPVVGSSPAPTATAGPNGGD-----GGSWAAAVGYMSAAPAPARQAG-DVSNPSPVTATPXXXXXXXXXXKDNDGKRPSYLETLSRGAAVDSXXXXXXXXXXXXXXXXSTPAPVPEAVLTYRDEQRLDDGFVSRAAVDALLEPLAEFNCNRLGREFLIRLFQESCVLVKATDGPPSRPETGKGAAKVKGQPRGVVRSQSMEPTGSKKSASAAASREQEVEYFIPCLLPTR 1648
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10610.424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J7I8_9PHAE1.980e-5039.59Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FWK1_ECTSI5.310e-3938.30LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10610contigS-dermatodea_contig10610:1260..5740 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.5
Seed ortholog evalue4.2e-39
Seed eggNOG ortholog2880.D7FWK1
Preferred namePKD1
KEGG koko:K04985,ko:K10348,ko:K10641
KEGG TC1.A.5.1.1
GOsGO:0000075,GO:0000076,GO:0000151,GO:0000278,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0007049,GO:0007093,GO:0007346,GO:0008150,GO:0009987,GO:0010389,GO:0010564,GO:0010948,GO:0010972,GO:0022402,GO:0031461,GO:0031462,GO:0031570,GO:0032991,GO:0033314,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0044774,GO:0044818,GO:0045786,GO:0045930,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051726,GO:0065007,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902494,GO:1902749,GO:1902750,GO:1903047,GO:1990234
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04040,ko04091,ko04121,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Exons6
Model size1572
Cds size1572
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10610.424.1prot_S-dermatodea_contig10610.424.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10610 1260..5740 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924165.6508682-CDS-S-dermatodea_contig10610:1259..15411622924165.6508682-CDS-S-dermatodea_contig10610:1259..1541Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10610 1260..1541 +
1694079062.68813-CDS-S-dermatodea_contig10610:1259..15411694079062.68813-CDS-S-dermatodea_contig10610:1259..1541Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10610 1260..1541 +
1622924165.6617053-CDS-S-dermatodea_contig10610:2491..26041622924165.6617053-CDS-S-dermatodea_contig10610:2491..2604Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10610 2492..2604 +
1694079062.7022321-CDS-S-dermatodea_contig10610:2491..26041694079062.7022321-CDS-S-dermatodea_contig10610:2491..2604Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10610 2492..2604 +
1622924165.676444-CDS-S-dermatodea_contig10610:3529..36341622924165.676444-CDS-S-dermatodea_contig10610:3529..3634Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10610 3530..3634 +
1694079062.7113714-CDS-S-dermatodea_contig10610:3529..36341694079062.7113714-CDS-S-dermatodea_contig10610:3529..3634Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10610 3530..3634 +
1622924165.6858964-CDS-S-dermatodea_contig10610:3685..39711622924165.6858964-CDS-S-dermatodea_contig10610:3685..3971Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10610 3686..3971 +
1694079062.7231278-CDS-S-dermatodea_contig10610:3685..39711694079062.7231278-CDS-S-dermatodea_contig10610:3685..3971Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10610 3686..3971 +
1622924165.6941326-CDS-S-dermatodea_contig10610:4022..46041622924165.6941326-CDS-S-dermatodea_contig10610:4022..4604Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10610 4023..4604 +
1694079062.7319522-CDS-S-dermatodea_contig10610:4022..46041694079062.7319522-CDS-S-dermatodea_contig10610:4022..4604Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10610 4023..4604 +
1622924165.7042773-CDS-S-dermatodea_contig10610:5536..57401622924165.7042773-CDS-S-dermatodea_contig10610:5536..5740Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10610 5537..5740 +
1694079062.7411282-CDS-S-dermatodea_contig10610:5536..57401694079062.7411282-CDS-S-dermatodea_contig10610:5536..5740Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10610 5537..5740 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10610.424.1

>prot_S-dermatodea_contig10610.424.1 ID=prot_S-dermatodea_contig10610.424.1|Name=mRNA_S-dermatodea_contig10610.424.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=524bp
QGFDAFGEEVIKLAGDAKRFSPSRLPPAWVQADRLVKLKRAEGRSIMSVA
DLIADLRRECFGGGVAAGSGEGSEGWEDSRNAVLSTASLIFGGLLNWLND
TSEVVYFNKKGLDKFVILHPLHLMQAIKLIVRRDLKDTLGNLLSDHRDTE
HRRLGEAPPPHAAVATGAVSAPSPSEYPPLTPSPSGGHKHRASTGGFHPA
ARPTTTPPAATTGRHAATATAAAGAGAGARHAGARSTLTTTIGRGRGGGG
YGGRTSRRYSRNLRAGGVGGRGRGGVGSGVPAGRAVGAGGWGEEGRSPPV
GPAPSPTGGGPESGYSRYPLGVGRAGSISPSDPAGSPAAKTPPQPSRPFS
YMESLVSGVEGISGVSDGSGNREKQPQVLGGVAARRGGHPRTPPTQAAAV
AAAEPTAVARKSLSDRDEVNLLSGTVRRAVVDALLEPLAELRWDAQAREF
LIRLLQESCVLVKMAPKKPSGAGTGVDVRRAQPISRSRSAESAVLARLPN
KKEEEDMYFIPCLLPVRNELIQN*
back to top

mRNA from alignment at S-dermatodea_contig10610:1260..5740+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10610.424.1 ID=mRNA_S-dermatodea_contig10610.424.1|Name=mRNA_S-dermatodea_contig10610.424.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4481bp|location=Sequence derived from alignment at S-dermatodea_contig10610:1260..5740+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGGCTTCGATGCCTTTGGCGAGGAAGTCATCAAGCTTGCCGGGGACGC
GAAGCGTTTCTCTCCCTCCCGGCTTCCGCCCGCCTGGGTGCAGGCCGACC
GCCTGGTGAAGCTGAAGAGGGCCGAGGGACGCAGCATCATGAGCGTGGCA
GACCTCATCGCCGACCTCAGGCGCGAGTGCTTCGGAGGCGGTGTGGCCGC
GGGCTCTGGGGAGGGGAGCGAGGGCTGGGAGGACTCGCGGAACGCGGTGT
TGTCGACGGCGAGTCTAATCTTTGGGGGGCTGGTGTTTGCGCGTCTTCGT
GTGTGTTTCGCTTTTCGCCTGTGTTGATTGATTGATTGATTGATTGATTG
CTTAATTAATGGATTGGTTTATTGATCATCACACTTTCAACCGACCGGCC
TCGATCCCGTTAGCTCGTAGGCTGATGAGAAATCGAGAGATCGAAAAATC
GTTCACGGAATTACCTGTATAACACGCACCAAGAAGGAATTGACACAAAC
TAGCTCTCGGAAACAGAGAGGGCATACCTCTGAACTTTGGGTGGGACGGT
GTGGTGCTGTACGTTTTTGTCGTACGGTTCATGTGGTGCGATTTGTCTGT
GATTTGGTACAACCTGGAGTGCACGCGGTGCGGTATGGCAATGGTGCATA
TGACATGGCGTGGCTGGTGATGCTATGATAATCGTTTTGCGGGTCTTGTG
CGACATCGCCCGGCGCGCGTACATAAGCTAAGCGGACGGAGAGGTTGATT
ACACAGTACACAGTATGTAATTGATCGATTACGCAATTGCTTAATGAATA
CTGCAAGTAGCATCAATACCTAAGAGAGAAGGAATAGGCATGCAGTAATA
TGATTGGCCAGAATGACTTCCACCCACAGATTGAAGAGTTGTGCGCCGTC
GCAACTGTCCTGGTCTCTTAACGCGAAAAATGGTGAGGCTGCCGGTTTGT
AAAGACCGCCTGCGTACCGTCCGATTCGCTCCCGTGCACGAAGCAAGAGA
AAAATACGCCACCACCTCCTGACCGTATACGGAAAAACGAACAGGAATTG
AACAGAGGAATTTGCCCGGTGTTCGTACCACGCGCGTTGTATGTAACCGC
TCGTGGAGAGGGAGAGGCGAAGCCTTCTCCAACGGCCAAAGCGAGTCTAC
GCGCGCGCCCAAATAGCTGTTGCCTCCGTCTTTAACGCACCGCTCTTGTT
TTTGTTCGCCGTTCTGTATTTTTCTTGGGCAGCTTAACTGGCTCAACGAC
ACGTCCGAGGTCGTGTATTTCAACAAGAAGGGACTGGACAAGTTCGTAAT
CCTGCACCCGCTGCATCTCATGCAAGCAATCAAGCTCATCGTCAGGTACC
GCCCCCGCGCGAGCGACGAGAGTTTGCTTAACCCTTTTGGCAAAGAGTCT
ATAGTATATACCATATAGTATATACCATATGTTTTAGGGGTTTGGCCACC
TGCCCGCGACGTTATTTCGCGTCGAACAACTACTCAACCACGGCTAGGTA
CTCTTCGCCCTTGTAGTCGCGGCAGAAAAACGGCCTCCTGCCACGCTTAG
CTCGCATGCACGGTGCGGCGCGCTCGTGCGTGTAGCCGGTACCGCATCAC
CCGTAGTCAAGACATTCCCCGCAAAAACTATACTTCGTATTTTAGAGCTC
TAATAGTATATTCTACATACTATACGCTATAGACTCGGTTCCAAAAGGGT
CAATTGGAGGGCCGACGCTCTCTGCCGTGTTTTGTTTGTCGAGATTAACG
TATCGTAAAGTGTAATCGCTCTCTCTCTCGGTGACGCCTACGCGAGACAC
CAAGCGGTTCGCTCTCGCCTGTCGTTGATCTCGTACGCGCCGAAAAACTA
TGCTGTGTGTGTAGGCTACAGCGTTACCTCGATGCAGACATCATCAACAG
CGGCATTGAAAGCTGGCGAGGAATCTACGCGCGACGTGATTGAGTGCCGG
GATCAGTTCAAGGACTCCCCCCCCCCCTTGCCCCAAGATTAATATGTTGC
TTTCAAACATCTAGAGGGAGCAATAGGATCGTTCCTCTTTTTGCGAGCGA
CCCCCCCTCCCCCTCTCCCTCCCCCCATAGAAGAAATGTAGTTGAAACCT
TTATATGTGCGCCGTAGGGTCTAATCCTTTCATTGAAAGAGGGCGTCCCG
GGACACACAAAAGAGCGTGAGTAATGTAGTAGCCCCCACCCCCCGCCCCC
CGCCCCCCGCCCCCCTTGATACTTCGTCGTGATGACCACACCGGCGTGGC
ACTGTGTCACCTTTCCGCAGGCGAGACCTGAAAGACACGCTGGGGAACCT
GCTCAGCGACCACCGGGACACGGAACATCGGCGCCTCGGGGAAGCCCCGC
CACCGCACGCTGCGGTGGCGACAGGGTCAGCGGGAGGAGGAGGGGGCATA
GTTACCCCGATCAAGGGGGGGGAGAGGGCGGTATCCGCCCCCAGCCCGTC
AGAGTACCCCCCGCTCACCCCGTCCCCCTCGGGAGGGCATAAACACCGGG
CGTCCACTGGAGGATTTCACCCCGCCGCTCGTCCAACTACAACACCCCCC
GCGGCCACCACCGGGCGACACGCAGCGACAGCGACAGCAGCAGCAGGAGC
AGGAGCAGGAGCACGCCATGCCGGAGCGAGATCTACCCTCACGACAACTA
TAGGCCGTGGCAGGGGCGGAGGAGGGTATGGTGGGCGTACCTCCCGCAGA
TATTCCCGCAACGTCAACCGCAGGCCGCAGGAGACGCCGGCGCCATCTGC
GGATGTGGTGGAGCTGCGCGCGGGCGGCGTTGGCGGCCGGGGGAGGGGGG
GGGTAGGGAGCGGTGTTCCAGCAGGGAGGGCGGTAGGAGCAGGGGGCTGG
GGAGAGGAGGGAAGATCCCCGCCTGTAGGACCCGCTCCTTCTCCGACGGG
CGGCGGGCCGGAATCGGGGTATTCGAGGTACCCGTTGGGGGTGGGGCGCG
CGGGTAGTATATCCCCGTCTGACCCCGCAGGGTCGCCTGCGGCAAAAACG
CCTCCGCAACCCTCGAGACCTTTTTCATATATGGAGAGTTTGGTATCTGG
AGTTGAGGGCATCTCCGGCGTGAGTGACGGCTCAGGCAACAGGGAGAAGC
AGCCGCAAGTTCTCGGGGGAGTCGCGGCTAGAAGGGGTGGTCATCCGCGA
ACACCGCCAACGCAGGCGGCGGCGGTGGCGGCAGCGGAACCGACGGCGGT
GGCGAGGAAGTCCTTGTCGGATCGGGATGAGGTTAACCTCTTGAGTGGGA
CCGTTCGTCGCGCGGTGGTGGACGCGTTGCTGGAGCCCCTGGCAGAGCTT
CGGTGGGACGCGCAGGCTAGAGAATTCCTCATCAGGCTGCTGCAGGTGCG
ACGCTCTTTGTACGCAGGGCGAAGGCTGGGGGTGGGGGGGTGGGGGGGGG
GGGGGGTGTTCTGTTCGTAAGGGCGTTCGTCCCCATGATGAGTTCTTTAA
AATGCTTGAGTTGTTTCTCGAAGGCCGTCTTGCCAGGGGCGCTGGAGGGC
GAATCGTTGCGTTCATCAGAGGGAGTGAATTGTGAAGCTCGGTTGCTCTT
GTCCTTCACCAAGACTCTCTGTCTCTGGGGCAACGATAGCGTGGTAATGC
CCGTCCTGCTGGCTTGATTGGCACCAACCACGGGCTGCGCAGGGTGCCTG
GGGAAGGGTGTCTCGGGTACTGAAGGCCGAGGCCACGCGCTCGCCGAAGA
GGGTATGGGTGCTCGTCGGCAAGTTGTGTCGGTGCCGAGGGCGAGAGGGT
CGGTTGGTGCGGGTGCCGCCTCACGTGAAGATAGTTGTCGAGGGAGAGCG
ATGCTATTGAAAAAAACGCCAAAAAGCTTCGAGCGTTCCCGGCTCTACCG
TTTCGTTGTGTTTGAGCTCGTGTACCTCTTGTTTTCTCTTTTTGATATTA
TAGATGTTTGTCGTCCCTTTTTTTTTCTTAACGCCGCGAATACAGCAATC
GTAAGTGCTGCTGTTGTTTCCTCATTGTGTACGGGTCTTGCTATTTTGTA
TTTTGTGTCTCTTATTCTTGGCCTCCATCGTACCGCCACTACTATGGCAA
CGGCTCAATCTCCCAGCGAATGACAATCGATATGAGAGTCCACCAGCACA
GCGCACTTGTCCAAGTATAATTCTTTCCAGCGAAAAGTAGCCAAATGTTT
GTTTTTAAACACCCGAAACGGCAGAATTTCTGCAGTCTCAACCGTTACTT
TCCTCGAATCACGAAAGCTCAAGATAGATCACCCCCCTACCCCCCACCCC
CCGATGAAAATTGCCTCCGTATGACAGGAGTCATGCGTGCTGGTCAAAAT
GGCCCCCAAGAAGCCATCTGGCGCCGGAACCGGCGTGGATGTGAGGAGGG
CACAACCCATCTCTCGTTCGCGGTCGGCCGAGTCGGCCGTCCTGGCGAGG
CTGCCAAACAAAAAGGAGGAGGAGGATATGTATTTCATCCCTTGTCTTCT
CCCGGTGAGGAATGAGCTGATTCAAAACTGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10610:1260..5740+

>mRNA_S-dermatodea_contig10610.424.1 ID=mRNA_S-dermatodea_contig10610.424.1|Name=mRNA_S-dermatodea_contig10610.424.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3144bp|location=Sequence derived from alignment at S-dermatodea_contig10610:1260..5740+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGGCTTCGATGCCTTTGGCGAGGAAGTCATCAAGCTTGCCGGGGACGC
GAAGCGTTTCTCTCCCTCCCGGCTTCCGCCCGCCTGGGTGCAGGCCGACC
GCCTGGTGAAGCTGAAGAGGGCCGAGGGACGCAGCATCATGAGCGTGGCA
GACCTCATCGCCGACCTCAGGCGCGAGTGCTTCGGAGGCGGTGTGGCCGC
GGGCTCTGGGGAGGGGAGCGAGGGCTGGGAGGACTCGCGGAACGCGGTGT
TGTCGACGGCGAGTCTAATCTTTGGGGGGCTGCAGGGCTTCGATGCCTTT
GGCGAGGAAGTCATCAAGCTTGCCGGGGACGCGAAGCGTTTCTCTCCCTC
CCGGCTTCCGCCCGCCTGGGTGCAGGCCGACCGCCTGGTGAAGCTGAAGA
GGGCCGAGGGACGCAGCATCATGAGCGTGGCAGACCTCATCGCCGACCTC
AGGCGCGAGTGCTTCGGAGGCGGTGTGGCCGCGGGCTCTGGGGAGGGGAG
CGAGGGCTGGGAGGACTCGCGGAACGCGGTGTTGTCGACGGCGAGTCTAA
TCTTTGGGGGGCTGCTTAACTGGCTCAACGACACGTCCGAGGTCGTGTAT
TTCAACAAGAAGGGACTGGACAAGTTCGTAATCCTGCACCCGCTGCATCT
CATGCAAGCAATCAAGCTCATCGTCAGCTTAACTGGCTCAACGACACGTC
CGAGGTCGTGTATTTCAACAAGAAGGGACTGGACAAGTTCGTAATCCTGC
ACCCGCTGCATCTCATGCAAGCAATCAAGCTCATCGTCAGGCGAGACCTG
AAAGACACGCTGGGGAACCTGCTCAGCGACCACCGGGACACGGAACATCG
GCGCCTCGGGGAAGCCCCGCCACCGCACGCTGCGGTGGCGACAGGGCGAG
ACCTGAAAGACACGCTGGGGAACCTGCTCAGCGACCACCGGGACACGGAA
CATCGGCGCCTCGGGGAAGCCCCGCCACCGCACGCTGCGGTGGCGACAGG
GGCGGTATCCGCCCCCAGCCCGTCAGAGTACCCCCCGCTCACCCCGTCCC
CCTCGGGAGGGCATAAACACCGGGCGTCCACTGGAGGATTTCACCCCGCC
GCTCGTCCAACTACAACACCCCCCGCGGCCACCACCGGGCGACACGCAGC
GACAGCGACAGCAGCAGCAGGAGCAGGAGCAGGAGCACGCCATGCCGGAG
CGAGATCTACCCTCACGACAACTATAGGCCGTGGCAGGGGCGGAGGAGGG
TATGGTGGGCGTACCTCCCGCAGATATTCCCGCAACGGCGGTATCCGCCC
CCAGCCCGTCAGAGTACCCCCCGCTCACCCCGTCCCCCTCGGGAGGGCAT
AAACACCGGGCGTCCACTGGAGGATTTCACCCCGCCGCTCGTCCAACTAC
AACACCCCCCGCGGCCACCACCGGGCGACACGCAGCGACAGCGACAGCAG
CAGCAGGAGCAGGAGCAGGAGCACGCCATGCCGGAGCGAGATCTACCCTC
ACGACAACTATAGGCCGTGGCAGGGGCGGAGGAGGGTATGGTGGGCGTAC
CTCCCGCAGATATTCCCGCAACCTGCGCGCGGGCGGCGTTGGCGGCCGGG
GGAGGGGGGGGGTAGGGAGCGGTGTTCCAGCAGGGAGGGCGGTAGGAGCA
GGGGGCTGGGGAGAGGAGGGAAGATCCCCGCCTGTAGGACCCGCTCCTTC
TCCGACGGGCGGCGGGCCGGAATCGGGGTATTCGAGGTACCCGTTGGGGG
TGGGGCGCGCGGGTAGTATATCCCCGTCTGACCCCGCAGGGTCGCCTGCG
GCAAAAACGCCTCCGCAACCCTCGAGACCTTTTTCATATATGGAGAGTTT
GGTATCTGGAGTTGAGGGCATCTCCGGCGTGAGTGACGGCTCAGGCAACA
GGGAGAAGCAGCCGCAAGTTCTCGGGGGAGTCGCGGCTAGAAGGGGTGGT
CATCCGCGAACACCGCCAACGCAGGCGGCGGCGGTGGCGGCAGCGGAACC
GACGGCGGTGGCGAGGAAGTCCTTGTCGGATCGGGATGAGGTTAACCTCT
TGAGTGGGACCGTTCGTCGCGCGGTGGTGGACGCGTTGCTGGAGCCCCTG
GCAGAGCTTCGGTGGGACGCGCAGGCTAGAGAATTCCTCATCAGGCTGCT
GCAGCTGCGCGCGGGCGGCGTTGGCGGCCGGGGGAGGGGGGGGGTAGGGA
GCGGTGTTCCAGCAGGGAGGGCGGTAGGAGCAGGGGGCTGGGGAGAGGAG
GGAAGATCCCCGCCTGTAGGACCCGCTCCTTCTCCGACGGGCGGCGGGCC
GGAATCGGGGTATTCGAGGTACCCGTTGGGGGTGGGGCGCGCGGGTAGTA
TATCCCCGTCTGACCCCGCAGGGTCGCCTGCGGCAAAAACGCCTCCGCAA
CCCTCGAGACCTTTTTCATATATGGAGAGTTTGGTATCTGGAGTTGAGGG
CATCTCCGGCGTGAGTGACGGCTCAGGCAACAGGGAGAAGCAGCCGCAAG
TTCTCGGGGGAGTCGCGGCTAGAAGGGGTGGTCATCCGCGAACACCGCCA
ACGCAGGCGGCGGCGGTGGCGGCAGCGGAACCGACGGCGGTGGCGAGGAA
GTCCTTGTCGGATCGGGATGAGGTTAACCTCTTGAGTGGGACCGTTCGTC
GCGCGGTGGTGGACGCGTTGCTGGAGCCCCTGGCAGAGCTTCGGTGGGAC
GCGCAGGCTAGAGAATTCCTCATCAGGCTGCTGCAGGAGTCATGCGTGCT
GGTCAAAATGGCCCCCAAGAAGCCATCTGGCGCCGGAACCGGCGTGGATG
TGAGGAGGGCACAACCCATCTCTCGTTCGCGGTCGGCCGAGTCGGCCGTC
CTGGCGAGGCTGCCAAACAAAAAGGAGGAGGAGGATATGTATTTCATCCC
TTGTCTTCTCCCGGTGAGGAATGAGCTGATTCAAAACTGAGAGTCATGCG
TGCTGGTCAAAATGGCCCCCAAGAAGCCATCTGGCGCCGGAACCGGCGTG
GATGTGAGGAGGGCACAACCCATCTCTCGTTCGCGGTCGGCCGAGTCGGC
CGTCCTGGCGAGGCTGCCAAACAAAAAGGAGGAGGAGGATATGTATTTCA
TCCCTTGTCTTCTCCCGGTGAGGAATGAGCTGATTCAAAACTGA
back to top