mRNA_S-dermatodea_contig10600.421.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10600.421.1
Unique NamemRNA_S-dermatodea_contig10600.421.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig10600.421.1 vs. uniprot
Match: A0A2G9UXN1_TELCI (Phosphoprotein phosphatase 1 domain protein n=1 Tax=Teladorsagia circumcincta TaxID=45464 RepID=A0A2G9UXN1_TELCI)

HSP 1 Score: 96.7 bits (239), Expect = 8.930e-25
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:    1 QVVEDGYEFFAKRRLVTLFSAPNYCGEFNNAGAMMSVDEALMCSFQVCF 147
            QVVEDGYEFFAKR+LVTLFSAPNYCGEF+NAG MMSVDE LMCSFQVC+
Sbjct:   67 QVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQVCY 115
[Close]
BLAST of mRNA_S-dermatodea_contig10600.421.1 vs. uniprot
Match: A0A0C2BL45_9BILA (Uncharacterized protein n=1 Tax=Ancylostoma duodenale TaxID=51022 RepID=A0A0C2BL45_9BILA)

HSP 1 Score: 95.9 bits (237), Expect = 1.700e-24
Identity = 43/49 (87.76%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    1 QVVEDGYEFFAKRRLVTLFSAPNYCGEFNNAGAMMSVDEALMCSFQVCF 147
            +VVEDGYEFFAKR+LVTLFSAPNYCGEF+NAG+MM+VDE LMCSFQVCF
Sbjct:   56 EVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGSMMTVDETLMCSFQVCF 104
[Close]
BLAST of mRNA_S-dermatodea_contig10600.421.1 vs. uniprot
Match: A0A3P6R9L5_CYLGO (SER_THR_PHOSPHATASE domain-containing protein (Fragment) n=1 Tax=Cylicostephanus goldi TaxID=71465 RepID=A0A3P6R9L5_CYLGO)

HSP 1 Score: 95.5 bits (236), Expect = 1.990e-24
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:    1 QVVEDGYEFFAKRRLVTLFSAPNYCGEFNNAGAMMSVDEALMCSFQVC 144
            QVVEDGYEFFAKR+LVTLFSAPNYCGEF+NAG MMSVDE LMCSFQVC
Sbjct:   55 QVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQVC 102
[Close]
BLAST of mRNA_S-dermatodea_contig10600.421.1 vs. uniprot
Match: A0A3M7QGI7_BRAPC (Serine threonine-phosphatase PP1-gamma catalytic subunit (Fragment) n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7QGI7_BRAPC)

HSP 1 Score: 93.6 bits (231), Expect = 5.000e-24
Identity = 43/47 (91.49%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 QVVEDGYEFFAKRRLVTLFSAPNYCGEFNNAGAMMSVDEALMCSFQV 141
            QVVEDGYEFFAKR+LVTLFSAPNYCGEF+NAGAMMSVDE LMCSFQ+
Sbjct:    2 QVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQI 48
[Close]
BLAST of mRNA_S-dermatodea_contig10600.421.1 vs. uniprot
Match: A0A1J3JIM0_NOCCA (Serine/threonine-protein phosphatase PP1-beta catalytic subunit (Fragment) n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3JIM0_NOCCA)

HSP 1 Score: 94.4 bits (233), Expect = 5.850e-24
Identity = 43/47 (91.49%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 QVVEDGYEFFAKRRLVTLFSAPNYCGEFNNAGAMMSVDEALMCSFQV 141
            QVVEDGYEFFAKRRLVT+FSAPNYCGEF+NAGAMMSVDE LMCSFQ+
Sbjct:   44 QVVEDGYEFFAKRRLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQI 90
[Close]
BLAST of mRNA_S-dermatodea_contig10600.421.1 vs. uniprot
Match: A0A0C2BKW5_9BILA (Uncharacterized protein n=1 Tax=Ancylostoma duodenale TaxID=51022 RepID=A0A0C2BKW5_9BILA)

HSP 1 Score: 92.8 bits (229), Expect = 1.040e-23
Identity = 42/47 (89.36%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    4 VVEDGYEFFAKRRLVTLFSAPNYCGEFNNAGAMMSVDEALMCSFQVC 144
            VVEDGYEFFAKR+LVTLFSAPNYCGEF+NAG+MM+VDE LMCSFQVC
Sbjct:   24 VVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGSMMTVDETLMCSFQVC 70
[Close]
BLAST of mRNA_S-dermatodea_contig10600.421.1 vs. uniprot
Match: A0A3P7IIN2_STRVU (Uncharacterized protein n=1 Tax=Strongylus vulgaris TaxID=40348 RepID=A0A3P7IIN2_STRVU)

HSP 1 Score: 92.8 bits (229), Expect = 1.090e-23
Identity = 42/47 (89.36%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    4 VVEDGYEFFAKRRLVTLFSAPNYCGEFNNAGAMMSVDEALMCSFQVC 144
            VVEDGYEFFAKR+LVTLFSAPNYCGEF+NAG+MM+VDE LMCSFQVC
Sbjct:    8 VVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGSMMTVDETLMCSFQVC 54
[Close]
BLAST of mRNA_S-dermatodea_contig10600.421.1 vs. uniprot
Match: A0A482RJW4_9ARCH (SER_THR_PHOSPHATASE domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RJW4_9ARCH)

HSP 1 Score: 93.6 bits (231), Expect = 1.120e-23
Identity = 43/47 (91.49%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 QVVEDGYEFFAKRRLVTLFSAPNYCGEFNNAGAMMSVDEALMCSFQV 141
            QVVEDGYEFFAKR+LVTLFSAPNYCGEF+NAGAMMSVDE LMCSFQ+
Sbjct:   37 QVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQI 83
[Close]
BLAST of mRNA_S-dermatodea_contig10600.421.1 vs. uniprot
Match: A0A8C9LI73_9PRIM (SER_THR_PHOSPHATASE domain-containing protein n=1 Tax=Piliocolobus tephrosceles TaxID=591936 RepID=A0A8C9LI73_9PRIM)

HSP 1 Score: 94.0 bits (232), Expect = 1.220e-23
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 QVVEDGYEFFAKRRLVTLFSAPNYCGEFNNAGAMMSVDEALMCSFQV 141
            QVVEDGYEFFAKR+LVTLFSAPNYCGEF+NAGAMMSVDE LMCSFQV
Sbjct:   72 QVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQV 118
[Close]
BLAST of mRNA_S-dermatodea_contig10600.421.1 vs. uniprot
Match: A0A024WH06_PLAFA (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit A n=2 Tax=Plasmodium falciparum TaxID=5833 RepID=A0A024WH06_PLAFA)

HSP 1 Score: 93.6 bits (231), Expect = 1.320e-23
Identity = 43/47 (91.49%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 QVVEDGYEFFAKRRLVTLFSAPNYCGEFNNAGAMMSVDEALMCSFQV 141
            QVVEDGYEFFAKR+LVTLFSAPNYCGEF+NAGAMMSVDE LMCSFQ+
Sbjct:   54 QVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQI 100
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10600.421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2G9UXN1_TELCI8.930e-2589.80Phosphoprotein phosphatase 1 domain protein n=1 Ta... [more]
A0A0C2BL45_9BILA1.700e-2487.76Uncharacterized protein n=1 Tax=Ancylostoma duoden... [more]
A0A3P6R9L5_CYLGO1.990e-2491.67SER_THR_PHOSPHATASE domain-containing protein (Fra... [more]
A0A3M7QGI7_BRAPC5.000e-2491.49Serine threonine-phosphatase PP1-gamma catalytic s... [more]
A0A1J3JIM0_NOCCA5.850e-2491.49Serine/threonine-protein phosphatase PP1-beta cata... [more]
A0A0C2BKW5_9BILA1.040e-2389.36Uncharacterized protein n=1 Tax=Ancylostoma duoden... [more]
A0A3P7IIN2_STRVU1.090e-2389.36Uncharacterized protein n=1 Tax=Strongylus vulgari... [more]
A0A482RJW4_9ARCH1.120e-2391.49SER_THR_PHOSPHATASE domain-containing protein n=1 ... [more]
A0A8C9LI73_9PRIM1.220e-2393.62SER_THR_PHOSPHATASE domain-containing protein n=1 ... [more]
A0A024WH06_PLAFA1.320e-2391.49Serine/threonine-protein phosphatase PP1-gamma cat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10600contigS-dermatodea_contig10600:7833..7979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score95.5
Seed ortholog evalue7.3e-18
Seed eggNOG ortholog482537.XP_008580666.1
Preferred namePPP1CC
KEGG koko:K06269
KEGG Pathwayko03015,ko04022,ko04024,ko04113,ko04114,ko04218,ko04261,ko04270,ko04390,ko04510,ko04611,ko04720,ko04728,ko04750,ko04810,ko04910,ko04921,ko04931,ko05031,ko05034,ko05168,ko05205,map03015,map04022,map04024,map04113,map04114,map04218,map04261,map04270,map04390,map04510,map04611,map04720,map04728,map04750,map04810,map04910,map04921,map04931,map05031,map05034,map05168,map05205
GOsGO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005488,GO:0005515,GO:0005521,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007399,GO:0007623,GO:0008022,GO:0008150,GO:0008152,GO:0008157,GO:0008284,GO:0008287,GO:0009314,GO:0009416,GO:0009605,GO:0009628,GO:0009648,GO:0009649,GO:0009987,GO:0010468,GO:0010720,GO:0014013,GO:0014015,GO:0016020,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019222,GO:0019538,GO:0019867,GO:0019899,GO:0019902,GO:0019903,GO:0019904,GO:0022008,GO:0030154,GO:0030182,GO:0030425,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032386,GO:0032501,GO:0032502,GO:0032879,GO:0032922,GO:0032991,GO:0036211,GO:0036477,GO:0042127,GO:0042578,GO:0042752,GO:0042995,GO:0043005,GO:0043153,GO:0043170,GO:0043197,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044309,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0044877,GO:0045202,GO:0045595,GO:0045597,GO:0046822,GO:0047485,GO:0048511,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051094,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0060251,GO:0060252,GO:0060255,GO:0060284,GO:0060341,GO:0065007,GO:0071704,GO:0072357,GO:0097447,GO:0097458,GO:0098588,GO:0098794,GO:0098805,GO:0120025,GO:0120038,GO:0140096,GO:1901564,GO:1902494,GO:1903293,GO:2000026
EggNOG free text desc.entrainment of circadian clock by photoperiod
EggNOG OGs35FSK@314146,38BV2@33154,3B9MQ@33208,3CRW5@33213,3J4KW@40674,482PK@7711,493SX@7742,COG0639@1,KOG0374@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEuarchontoglires
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03019,ko03021,ko03041
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924165.4590993-CDS-S-dermatodea_contig10600:7832..79791622924165.4590993-CDS-S-dermatodea_contig10600:7832..7979Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10600 7833..7979 -
1694079062.5495737-CDS-S-dermatodea_contig10600:7832..79791694079062.5495737-CDS-S-dermatodea_contig10600:7832..7979Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10600 7833..7979 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10600.421.1prot_S-dermatodea_contig10600.421.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10600 7833..7979 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10600.421.1

>prot_S-dermatodea_contig10600.421.1 ID=prot_S-dermatodea_contig10600.421.1|Name=mRNA_S-dermatodea_contig10600.421.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=49bp
QVVEDGYEFFAKRRLVTLFSAPNYCGEFNNAGAMMSVDEALMCSFQVCF
back to top

mRNA from alignment at S-dermatodea_contig10600:7833..7979-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10600.421.1 ID=mRNA_S-dermatodea_contig10600.421.1|Name=mRNA_S-dermatodea_contig10600.421.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=147bp|location=Sequence derived from alignment at S-dermatodea_contig10600:7833..7979- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTTGTCGAAGACGGCTACGAGTTCTTCGCGAAGCGACGCCTCGTCAC
CCTATTCTCGGCGCCGAACTACTGCGGCGAGTTTAACAACGCCGGTGCTA
TGATGAGCGTCGACGAGGCTCTCATGTGCTCCTTCCAGGTATGCTTT
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10600:7833..7979-

>mRNA_S-dermatodea_contig10600.421.1 ID=mRNA_S-dermatodea_contig10600.421.1|Name=mRNA_S-dermatodea_contig10600.421.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at S-dermatodea_contig10600:7833..7979- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTTGTCGAAGACGGCTACGAGTTCTTCGCGAAGCGACGCCTCGTCAC
CCTATTCTCGGCGCCGAACTACTGCGGCGAGTTTAACAACGCCGGTGCTA
TGATGAGCGTCGACGAGGCTCTCATGTGCTCCTTCCAGGTATGCTTTCAG
GTTGTCGAAGACGGCTACGAGTTCTTCGCGAAGCGACGCCTCGTCACCCT
ATTCTCGGCGCCGAACTACTGCGGCGAGTTTAACAACGCCGGTGCTATGA
TGAGCGTCGACGAGGCTCTCATGTGCTCCTTCCAGGTATGCTTT
back to top