mRNA_S-dermatodea_contig10598.416.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10598.416.1
Unique NamemRNA_S-dermatodea_contig10598.416.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10598.416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10598contigS-dermatodea_contig10598:1477..3234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size387
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924164.5786312-CDS-S-dermatodea_contig10598:1476..18111622924164.5786312-CDS-S-dermatodea_contig10598:1476..1811Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10598 1477..1811 -
1694079061.8123136-CDS-S-dermatodea_contig10598:1476..18111694079061.8123136-CDS-S-dermatodea_contig10598:1476..1811Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10598 1477..1811 -
1622924164.5893195-CDS-S-dermatodea_contig10598:3182..32341622924164.5893195-CDS-S-dermatodea_contig10598:3182..3234Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10598 3183..3234 -
1694079061.821977-CDS-S-dermatodea_contig10598:3182..32341694079061.821977-CDS-S-dermatodea_contig10598:3182..3234Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10598 3183..3234 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10598.416.1prot_S-dermatodea_contig10598.416.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10598 1477..3234 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10598.416.1

>prot_S-dermatodea_contig10598.416.1 ID=prot_S-dermatodea_contig10598.416.1|Name=mRNA_S-dermatodea_contig10598.416.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=129bp
AVAPRRVDSERDIQPPRGLWQQNSVANVNPRTGAAAIADTGATANANAGV
NPYAGIWKEPGRHQRHMRSARMLQAGAVPSADADAAEAAVEEEEFMKISA
FSYVLRRTLGVRSFAKTGLLSWGGGAKER
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mRNA from alignment at S-dermatodea_contig10598:1477..3234-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10598.416.1 ID=mRNA_S-dermatodea_contig10598.416.1|Name=mRNA_S-dermatodea_contig10598.416.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1758bp|location=Sequence derived from alignment at S-dermatodea_contig10598:1477..3234- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGTCGCCCCCCGTCGCGTCGATTCTGAGCGGGACATCCAGCCACCACG
AGGTCTGATTTGATTCGTTGGTTGATTTGATTTGATTTGATTTGATTGGG
TAGTTGGATGGTTTGATTGATTGGGTTATTGATTGATTGATTTGAGATTG
ATTGATTGATTGCTTAGGTGGTTAGTTTGTTGATTGTTTGATTGATTGAT
TGATTGATTGGTTGGTTAGTTTGATTTGATTCGTTGGTTGATTCGTTGTT
AGTTGGATGATTAGAGCTAGATTGATTGGGTTACTGATTACTGATTGATT
GATTTGAGATTGATTTTTACTTGATTCGTTGGTTGATTTGATTTGATTTG
ATTGGTTTGTTGGATGATTTAATTGATTGGGTTATTGATTGATTGATTTG
AGGTTGATTGGTTGATTGGTTGATTGATTGGTTGGTTCATTTGATTGATT
GGTTGTTTATTTGGTTGGTTGGTTGATTATTTGGTTAGTTGGATGATTAG
AGCTAGATTGATTTACTGATTGATTGATTTGAGATTGATTTGACTTGATT
CGTTGGTTGATTTGATTTGATTTGATTTGATTTGATTTGACTGGTTAGTT
GGATGATTTAATTGATTGGGTTATTGATTGATTGATTTGAGATTGATTGA
TTGATTGGTTAGGTGGTTAGTTTGTTGATGGTTTGATTGATTGATTGTTT
GGTTGATTTGATTCGTTGGTTGATTCGTTGATTAGTTGGATGATTAGAGC
TAGATTGATTGGGTTACTGATTGATTGATTGATTGATTGGTTGATTGATT
TAATGATTTATTGTTACTGATTGATGGGTTAGATGGTTGGTTGGTTGGTC
GATTGAATGGTTTATTGATTTTATTGTTATCACACTTATAACCAACCGGC
CTGCCAACGGATGCCGTTTCCGTTCGTGCTCAGATGAAAAATCGAGAACT
AAAAAAACACAAGGGGGAAAAAAACGAAATTACCCACACTACAATAGTAG
ACTTTGACACTTGTTCGACAAAGAAATTTCCCGCGTTTTTTACTGGCCAA
AGCTGACAGTCTTGGTTCGGAATGTGGTCGCAATGGCCGTACAAAAGCGG
TCTCGCGCCACGCTCAGCTCGCATGCGCGATGCGCTCGTGCGTGTAAGCG
TCACCGCATTACCCGCACTCAGTAGTCAGTAGTGAGTATGTTAATATTAA
TAGTCAGTAGTCTTAGTCATTAGTCTTTTAAGAGTCAGTTGTCATTCAGT
GAGTATTAGTCAGTACTAGTCATTATTCAGTACTAGTCATTAGTCAGTAC
TAGTCAGTAGTCAGTAGTCAGTAGTCGGTATTCATTCGTCAGTATAATAG
TCACCCCATTCGCCGCAAAAACGGACTCGCTTTCAATAGGGTTAACCCTC
TTCGATGAATCCGACCTTTGCAGGTCTATGGCAACAAAATTCCGTCGCGA
ACGTTAACCCAAGAACGGGAGCTGCCGCTATCGCTGACACTGGCGCTACT
GCTAACGCTAACGCTGGCGTTAACCCTTACGCTGGTATCTGGAAAGAGCC
GGGACGGCATCAGCGACACATGCGTTCCGCGCGGATGTTGCAGGCTGGAG
CAGTGCCGTCAGCAGATGCAGATGCAGCAGAAGCGGCAGTGGAAGAGGAG
GAGTTCATGAAGATTTCGGCGTTTTCGTACGTCCTGCGGAGAACCCTCGG
CGTTCGAAGTTTCGCGAAAACTGGGCTGCTTTCGTGGGGCGGGGGCGCTA
AGGAGCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10598:1477..3234-

>mRNA_S-dermatodea_contig10598.416.1 ID=mRNA_S-dermatodea_contig10598.416.1|Name=mRNA_S-dermatodea_contig10598.416.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at S-dermatodea_contig10598:1477..3234- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGTCGCCCCCCGTCGCGTCGATTCTGAGCGGGACATCCAGCCACCACG
AGGCCGTCGCCCCCCGTCGCGTCGATTCTGAGCGGGACATCCAGCCACCA
CGAGGTCTATGGCAACAAAATTCCGTCGCGAACGTTAACCCAAGAACGGG
AGCTGCCGCTATCGCTGACACTGGCGCTACTGCTAACGCTAACGCTGGCG
TTAACCCTTACGCTGGTATCTGGAAAGAGCCGGGACGGCATCAGCGACAC
ATGCGTTCCGCGCGGATGTTGCAGGCTGGAGCAGTGCCGTCAGCAGATGC
AGATGCAGCAGAAGCGGCAGTGGAAGAGGAGGAGTTCATGAAGATTTCGG
CGTTTTCGTACGTCCTGCGGAGAACCCTCGGCGTTCGAAGTTTCGCGAAA
ACTGGGCTGCTTTCGTGGGGCGGGGGCGCTAAGGAGCGGGTCTATGGCAA
CAAAATTCCGTCGCGAACGTTAACCCAAGAACGGGAGCTGCCGCTATCGC
TGACACTGGCGCTACTGCTAACGCTAACGCTGGCGTTAACCCTTACGCTG
GTATCTGGAAAGAGCCGGGACGGCATCAGCGACACATGCGTTCCGCGCGG
ATGTTGCAGGCTGGAGCAGTGCCGTCAGCAGATGCAGATGCAGCAGAAGC
GGCAGTGGAAGAGGAGGAGTTCATGAAGATTTCGGCGTTTTCGTACGTCC
TGCGGAGAACCCTCGGCGTTCGAAGTTTCGCGAAAACTGGGCTGCTTTCG
TGGGGCGGGGGCGCTAAGGAGCGG
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