mRNA_S-dermatodea_contig10592.413.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10592.413.1
Unique NamemRNA_S-dermatodea_contig10592.413.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig10592.413.1 vs. uniprot
Match: D7FQB1_ECTSI (SAM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQB1_ECTSI)

HSP 1 Score: 540 bits (1392), Expect = 2.940e-184
Identity = 392/602 (65.12%), Postives = 422/602 (70.10%), Query Frame = 1 
Query:    1 LPQGSMGRELLGEGSFMGRGYSIKRCQGFVRCDMDIDAEVVGWVIGKNGDTIKDMKHKTGCNMWVDQRALKLTITGPDLASVEHAAKSVDAYVAAAPIKAGAVEAAVTKTLECPPHLLDVLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLAYTSVQATIHAAIHG--GLGLRVNTPESLGPHGGAGYFSXXXXXXXXARSTGGLS--------------------------------PLEGMGGGAASGAGMQMLPTHVSEFR-PMDVPEYRSVGSWQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------EIETLSFGSIGARTPVSSAAGSPRVGASYNTSPALSGTASTPGGDWSLFSGGFRLGVNALQEDSSC---SSTPTTARATPRVHFPEGLQALSGND--VAGAEGGDA---QGDDGEDQKETAD-DAGKXXXXXXXXXXXAGAHAPPPSPASTTSGEPSRKVRG-PLAGAYAVDALE--SGDGEDSETEG-----------------EDIADKVARLGKRLQAMGLGKYCPKFAENEVDLEALGLMSESDLADIGIPKGPRLKILNAVGNRGGL--NHT 1590
            L   S GRE+LGEGSFMGRGYSIKRCQGFVRCDMDIDAEVVGWVIGKNG TIKDMKHKTGCNMWVDQRALKLTITGPDL SVEHAAKSVDAYVAAAPIKAGAVEAAVTKT+ECPP LLD LGDRTTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLAY SV+A IH A+HG  GLGLRV+TP+S G  G  G   XXXXXXXX    G +S                                P    G G +S A   +      ++R   D  E+  + +WQQ+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      EIET+S GSIGARTPVSS AGSPRV  SYNTSPALSGTASTP GDWSLFSGGF +G+ ALQE  S    SSTPTTAR TPRVHFPEGL+AL G     + A  GD    +G         AD ++G XXXXXXXXXXX        SPA T  GE SR++ G P+  A  + ALE  + DGE+                      EDI+DKVARLGK LQ MGLGKYCPKFAENEVDLEALGLMSESDLADIGIPKGPRLKILNAVG R     NH 
Sbjct:   33 LGSSSAGREVLGEGSFMGRGYSIKRCQGFVRCDMDIDAEVVGWVIGKNGSTIKDMKHKTGCNMWVDQRALKLTITGPDLPSVEHAAKSVDAYVAAAPIKAGAVEAAVTKTIECPPQLLDDLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLAYESVRAMIHNAVHGSYGLGLRVSTPDSHGSFGVGGXXXXXXXXXXXYFPDGAMSXXXXXXXXXXMRSPLVSGAVAXXXXGMHHLMLPSTAGGAGGSSHADPDLHHLAAPDYRHARDTAEFHHLATWQQEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSEIETVSLGSIGARTPVSSTAGSPRVVGSYNTSPALSGTASTPVGDWSLFSGGFGIGMAALQEGESSTSRSSTPTTARTTPRVHFPEGLRALVGGAGRASAASAGDLAVLKGSGLLSPASAADGNSGXXXXXXXXXXXXXXXXXXXXSPALTAGGEASRRMAGLPVPEAQVLSALEGQTSDGEEXXXXXXXXXXXXXXXXXXXXXXEDISDKVARLGKVLQTMGLGKYCPKFAENEVDLEALGLMSESDLADIGIPKGPRLKILNAVGARAAAATNHA 634
[Close]
BLAST of mRNA_S-dermatodea_contig10592.413.1 vs. uniprot
Match: A0A835ZGS8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGS8_9STRA)

HSP 1 Score: 246 bits (628), Expect = 6.510e-75
Identity = 123/150 (82.00%), Postives = 136/150 (90.67%), Query Frame = 1 
Query:   61 YSIKRCQGFVRCDMDIDAEVVGWVIGKNGDTIKDMKHKTGCNMWVDQRALKLTITGPDLASVEHAAKSVDAYVAAAPIKAGAVEAAVTKTLECPPHLLDVLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLAYTSVQATIHAA 510
            YSIKRCQGFVRCDMDIDAEVVGWVIGK+G TIKD+K+KTGCNMWVDQRALKLTITGPD+ +VEHAAKSV+AYVAAAPIKAGAVEAAVT++L+CPPHLLDVLGDR TIARIVKET AQVVVNKK+ R+IVRG   +V +A   VQA I AA
Sbjct:   42 YSIKRCQGFVRCDMDIDAEVVGWVIGKSGSTIKDLKNKTGCNMWVDQRALKLTITGPDVRTVEHAAKSVEAYVAAAPIKAGAVEAAVTRSLDCPPHLLDVLGDRATIARIVKETRAQVVVNKKMARVIVRGGPHAVQMACGKVQAIITAA 191
[Close]
BLAST of mRNA_S-dermatodea_contig10592.413.1 vs. uniprot
Match: A0A835YT56_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT56_9STRA)

HSP 1 Score: 243 bits (619), Expect = 8.630e-71
Identity = 118/150 (78.67%), Postives = 135/150 (90.00%), Query Frame = 1 
Query:   61 YSIKRCQGFVRCDMDIDAEVVGWVIGKNGDTIKDMKHKTGCNMWVDQRALKLTITGPDLASVEHAAKSVDAYVAAAPIKAGAVEAAVTKTLECPPHLLDVLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLAYTSVQATIHAA 510
            YSIKRCQGF+RCDMDIDAEVVGWVIG+NG TIKD+K+KTGCNMWVDQRALKLTITGPD+ +VEHAAK V+AYVAAAPIKAGAVEAAVT++LECPPHLLD+LGDR TIARIVKET AQVVVNKK+ R+I+RG+  +V +A   +Q  I AA
Sbjct:   57 YSIKRCQGFIRCDMDIDAEVVGWVIGRNGSTIKDLKNKTGCNMWVDQRALKLTITGPDVCAVEHAAKCVEAYVAAAPIKAGAVEAAVTRSLECPPHLLDMLGDRATIARIVKETRAQVVVNKKMARVIIRGNAHAVHMACGRIQTIIAAA 206
[Close]
BLAST of mRNA_S-dermatodea_contig10592.413.1 vs. uniprot
Match: D7FHT5_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT5_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 1.620e-29
Identity = 175/537 (32.59%), Postives = 239/537 (44.51%), Query Frame = 1 
Query:   67 IKRCQGFVRCDMDIDAEVVGWVIGKNGDTIKDMKHKTGCNMWVDQRALKLTITGPDLASVEHAAKSVDAYVAAAPIK---AGAVEAAVTKTLECPPHLLDVLGDR--TTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLAYTSVQATI---HAAIHG-GLGLRVNTPESLG-PHGGAGYFSXXXXXXXX-----ARSTGGLSPLEGMGGGAASGAGMQMLPTHVSEFRPMDVPEYRSVGS--------------WQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIETLSF--------GSIGARTPVSSAAGSPRVGA-SYNTSPALSGTASTPGGDWSLFSGGFRLGVNALQEDSSCSSTPTTARATPRVHFPEGLQALSGNDVAGAEGGDAQGDDGEDQKETADDAGKXXXXXXXXXXXAGAHAPPPSPASTTSGEPSRKVRGPLAGAYAVDALESGDGEDSETEGEDIADKVARLGKRLQAMGLGKYCPKFAENEVDLEALGLMSESDLADIGIPKGPRLKILNAV 1563
            ++R  GFVRC MDI  EVVGWVIG++G  IK+MKH++GC MWVDQ+ LKL ITG D+  +  AA  V   ++ AP+    AG  +   +  +ECPPHL+ +L  R  +TI RI +E+ A VV+N+K+ ++IV G  +SV L    ++  I    +A HG GLG  V  P  L  P G AG                 RSTG       M  G A G  M   P  +      D     S G                ++Q        XXXXXXXXXXXXXXXXXX     E +   F        G +G     S+A+G  R G+ S   +P L G  S   G W++      +G   ++   +       A   P +    G    +G  VAGA                                    ++   +    + G+ SR+   P                     G  + +  A L + L  MGLG+Y     ENE+DLEA+ LM++SD  DIGIPKGPR+K+L A+
Sbjct:   25 LERFPGFVRCVMDIAPEVVGWVIGRSGAHIKEMKHRSGCGMWVDQKDLKLYITGADMPRIHAAAALVGDLISKAPVNVNSAGVEDEVTSHMIECPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRLGVAMIEDVITFGRSAEHGAGLGGAV-PPNFLDFPAGVAGMAEFMDDGGGGLDSFTVRSTGPPGQQPFMNPGEAGGVRMGSSPLSIPGSG--DPGSNLSAGGAGFPVVGGAPYDEELRKQQLRGSPASXXXXXXXXXXXXXXXXXXRPAKMEADVAGFNGKEMDCGGMLGHN---SAASGGSRTGSISSGGTPPLVGR-SLSMGSWNV------MGAPPIRVVDTAGGXXXXA---PPLRL--GNSPATGLSVAGA---------------------------LMNMNRLSINSDDSNGGGRSIGQASRQRERP---------------------GTPVGNP-ADLAEFLGDMGLGQYAQALTENEIDLEAVQLMADSDFQDIGIPKGPRVKLLYAL 494
[Close]
BLAST of mRNA_S-dermatodea_contig10592.413.1 vs. uniprot
Match: A0A835YRS0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRS0_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.080e-23
Identity = 60/127 (47.24%), Postives = 88/127 (69.29%), Query Frame = 1 
Query:   67 IKRCQGFVRCDMDIDAEVVGWVIGKNGDTIKDMKHKTGCNMWVDQRALKLTITGPDLASVEHAAKSVDAYVAAAPIK---AGAVEAAVTKTLECPPHLLDVLGDR--TTIARIVKETHAQVVVNKKI 432
            +++  GFVRC +DI  EVVGWVIG++G  IK+MKH++GC MWVDQ+ LKL ITG D+  +  AA  V   ++ AP+    AG  +  V++ ++CPPHL+ +L  R  +TI RI +E+ A VV+N+K+
Sbjct:  292 LEKFPGFVRCVIDIAPEVVGWVIGRSGSHIKEMKHRSGCGMWVDQKDLKLYITGTDMPRIHIAAGMVADLISKAPVNMNAAGVDDEVVSQMIDCPPHLIGLLIGRGGSTIKRIKEESRANVVINQKM 418
[Close]
BLAST of mRNA_S-dermatodea_contig10592.413.1 vs. uniprot
Match: A0A836CJQ9_9STRA (SAM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJQ9_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 9.060e-18
Identity = 59/161 (36.65%), Postives = 87/161 (54.04%), Query Frame = 1 
Query:  115 EVVGWVIGKNGDTIKDMKHKTGCNMWVDQRALKLTITGPDLASVEHAAKSVDAYVAAAPI---------------------------------KAGAVEAAVTKTLECPPHLLDVLGDR--TTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLAYTSVQ 492
            EVVGWVIG++G  IK+MKH++GC MWVDQ+ LKL ITG D+  +  AA  V   ++  P                                   AG  +  V++ ++CPPHL+ +L  R  +TI RI +E+ A VV+N+K+ ++IV G  +SV LA   ++
Sbjct:  318 EVVGWVIGRSGSHIKEMKHRSGCGMWVDQKDLKLYITGTDMPRIHIAAGMVADLISKVPYVPSFKGMYRAYQXXXXXXXXXXXXXXXXXVNVSAAGVEDEVVSQMMDCPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRLAVAMIE 478
[Close]
BLAST of mRNA_S-dermatodea_contig10592.413.1 vs. uniprot
Match: A0A6H5JET1_9PHAE (SAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET1_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 4.140e-14
Identity = 50/127 (39.37%), Postives = 77/127 (60.63%), Query Frame = 1 
Query:  163 MKHKTGCNMWVDQRALKLTITGPDLASVEHAAKSVDAYVAAAPIK---AGAVEAAVTKTLECPPHLLDVLGDR--TTIARIVKETHAQVVVNKKIGRIIVRGDHRSVDLAYTSVQATI---HAAIHG 519
            ++H++GC MWVDQ+ LKL ITG D+  +  AA  V   ++ AP+    AG  +   +  +ECPPHL+ +L  R  +TI RI +E+ A VV+N+K+ ++IV G  +SV L    ++  I    +A HG
Sbjct:   59 LRHRSGCGMWVDQKDLKLYITGADMPRIHAAAALVGDLISKAPVNVNSAGVEDEVTSHMIECPPHLIGLLIGRGGSTIKRIKEESRANVVINQKMMKVIVSGIPQSVRLGVAMIEDVITFGRSAEHG 185
[Close]
BLAST of mRNA_S-dermatodea_contig10592.413.1 vs. uniprot
Match: A0A382VC15_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382VC15_9ZZZZ)

HSP 1 Score: 62.4 bits (150), Expect = 1.120e-7
Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 1 
Query: 1420 LQAMGLGKYCPKFAENEVDLEALGLMSESDLADIGIPKGPRLKILNAV 1563
            L  +GL KY   FAENE+DL+A+GL+SE D  ++G+P GPR K+L AV
Sbjct:    9 LDNLGLSKYADVFAENEIDLDAVGLLSEEDFKELGLPMGPRRKLLAAV 56
[Close]
BLAST of mRNA_S-dermatodea_contig10592.413.1 vs. uniprot
Match: A0A813JZV9_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JZV9_POLGL)

HSP 1 Score: 60.8 bits (146), Expect = 1.130e-7
Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = 1 
Query: 1420 LQAMGLGKYCPKFAENEVDLEALGLMSESDLADIGIPKGPRLKILNAV 1563
            +Q +GL ++ P F   EVDL+AL L  E DL D+G+PKGPR+K+L AV
Sbjct:    5 MQQIGLERFIPAFQAEEVDLDALSLFEEKDLQDLGLPKGPRVKLLRAV 52
[Close]
BLAST of mRNA_S-dermatodea_contig10592.413.1 vs. uniprot
Match: A0A6J1WLS7_GALME (Usher syndrome type-1G protein-like n=1 Tax=Galleria mellonella TaxID=7137 RepID=A0A6J1WLS7_GALME)

HSP 1 Score: 62.8 bits (151), Expect = 1.220e-7
Identity = 41/106 (38.68%), Postives = 56/106 (52.83%), Query Frame = 1 
Query: 1267 PASTTSGEPSRKVRGPLAGAYAVDALESGDGEDS----ETEGEDIADKVARLGKRLQAMGLGKYCPKFAENEVDLEALGLMSESDLADIGIPKGPRLKILNAVGNR 1572
            PA T   + S    G LA  +A    E    E S    + EGE      A L + L A GLG+Y  KF + ++DL+AL L++ESDL  +G+P GP  K++ AV  R
Sbjct:   83 PAGTAGEDLSIGSAGSLAARHAYQPAEWNQSESSTVSSDEEGEAEESGYASLERFLTAWGLGQYVQKFKDEQIDLDALMLLTESDLKSLGLPLGPYRKLVTAVQER 188
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10592.413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQB1_ECTSI2.940e-18465.12SAM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835ZGS8_9STRA6.510e-7582.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YT56_9STRA8.630e-7178.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FHT5_ECTSI1.620e-2932.59SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YRS0_9STRA1.080e-2347.24Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CJQ9_9STRA9.060e-1836.65SAM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6H5JET1_9PHAE4.140e-1439.37SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A382VC15_9ZZZZ1.120e-756.25Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A813JZV9_POLGL1.130e-754.17Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A6J1WLS7_GALME1.220e-738.68Usher syndrome type-1G protein-like n=1 Tax=Galler... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10592contigS-dermatodea_contig10592:1643..5964 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score64.7
Seed ortholog evalue1.5e-07
Seed eggNOG ortholog400682.PAC_15712215
Preferred nameANKRD17
KEGG koko:K16726
GOsGO:0000785,GO:0001568,GO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0001817,GO:0001819,GO:0001944,GO:0001955,GO:0002376,GO:0002682,GO:0002684,GO:0002697,GO:0002699,GO:0002831,GO:0002833,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005694,GO:0005737,GO:0006275,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0006996,GO:0007005,GO:0007010,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007346,GO:0007399,GO:0007423,GO:0007492,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009887,GO:0009888,GO:0009889,GO:0009892,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0010506,GO:0010507,GO:0010556,GO:0010564,GO:0010639,GO:0010646,GO:0010647,GO:0010821,GO:0010823,GO:0010927,GO:0010941,GO:0012505,GO:0016020,GO:0016043,GO:0019219,GO:0019222,GO:0019730,GO:0019899,GO:0019900,GO:0019901,GO:0021700,GO:0022008,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030036,GO:0030154,GO:0030182,GO:0030239,GO:0031032,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031329,GO:0031330,GO:0031347,GO:0031349,GO:0031430,GO:0031672,GO:0031674,GO:0031965,GO:0031967,GO:0031975,GO:0032101,GO:0032103,GO:0032501,GO:0032502,GO:0032989,GO:0033043,GO:0039531,GO:0039533,GO:0039535,GO:0040011,GO:0042692,GO:0042742,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043122,GO:0043123,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043292,GO:0043900,GO:0043902,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044449,GO:0044464,GO:0045087,GO:0045088,GO:0045089,GO:0045214,GO:0045595,GO:0045596,GO:0045787,GO:0045931,GO:0046530,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048592,GO:0048646,GO:0048699,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050688,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051093,GO:0051128,GO:0051129,GO:0051146,GO:0051147,GO:0051148,GO:0051150,GO:0051151,GO:0051171,GO:0051239,GO:0051240,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0055001,GO:0055002,GO:0060255,GO:0060361,GO:0060548,GO:0061061,GO:0065007,GO:0070925,GO:0071695,GO:0071840,GO:0072358,GO:0072359,GO:0080090,GO:0080134,GO:0090068,GO:0090596,GO:0097435,GO:0098542,GO:0099080,GO:0099081,GO:0099512,GO:1900087,GO:1900245,GO:1900246,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902531,GO:1902533,GO:1902806,GO:1902808,GO:1903146,GO:1903147,GO:2000045,GO:2000112
EggNOG free text desc.positive regulation of MDA-5 signaling pathway
EggNOG OGs38I05@33154,3BHRH@33208,COG0666@1,KOG0504@2759,KOG4369@1,KOG4369@2759
COG Functional cat.T
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionK Homology domain
Ec32 orthologEc-01_006780.1
Exons2
Model size1599
Cds size1584
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10592.413.1prot_S-dermatodea_contig10592.413.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10592 1643..5949 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924164.4361608-CDS-S-dermatodea_contig10592:1642..30921622924164.4361608-CDS-S-dermatodea_contig10592:1642..3092Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10592 1643..3092 -
1694079061.725539-CDS-S-dermatodea_contig10592:1642..30921694079061.725539-CDS-S-dermatodea_contig10592:1642..3092Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10592 1643..3092 -
1622924164.4473612-CDS-S-dermatodea_contig10592:5815..59491622924164.4473612-CDS-S-dermatodea_contig10592:5815..5949Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10592 5816..5949 -
1694079061.7362344-CDS-S-dermatodea_contig10592:5815..59491694079061.7362344-CDS-S-dermatodea_contig10592:5815..5949Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10592 5816..5949 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924164.461036-UTR-S-dermatodea_contig10592:5949..59641622924164.461036-UTR-S-dermatodea_contig10592:5949..5964Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10592 5950..5964 -
1694079061.7485847-UTR-S-dermatodea_contig10592:5949..59641694079061.7485847-UTR-S-dermatodea_contig10592:5949..5964Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10592 5950..5964 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10592.413.1

>prot_S-dermatodea_contig10592.413.1 ID=prot_S-dermatodea_contig10592.413.1|Name=mRNA_S-dermatodea_contig10592.413.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=528bp
MGRELLGEGSFMGRGYSIKRCQGFVRCDMDIDAEVVGWVIGKNGDTIKDM
KHKTGCNMWVDQRALKLTITGPDLASVEHAAKSVDAYVAAAPIKAGAVEA
AVTKTLECPPHLLDVLGDRTTIARIVKETHAQVVVNKKIGRIIVRGDHRS
VDLAYTSVQATIHAAIHGGLGLRVNTPESLGPHGGAGYFSSGGGGGGAAR
STGGLSPLEGMGGGAASGAGMQMLPTHVSEFRPMDVPEYRSVGSWQQQQQ
QHDLHAHAQMQRHHNHRGGDGRGSDTDESEIETLSFGSIGARTPVSSAAG
SPRVGASYNTSPALSGTASTPGGDWSLFSGGFRLGVNALQEDSSCSSTPT
TARATPRVHFPEGLQALSGNDVAGAEGGDAQGDDGEDQKETADDAGKSGG
AAAAVGGLAGAHAPPPSPASTTSGEPSRKVRGPLAGAYAVDALESGDGED
SETEGEDIADKVARLGKRLQAMGLGKYCPKFAENEVDLEALGLMSESDLA
DIGIPKGPRLKILNAVGNRGGLNHTDV*
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mRNA from alignment at S-dermatodea_contig10592:1643..5964-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10592.413.1 ID=mRNA_S-dermatodea_contig10592.413.1|Name=mRNA_S-dermatodea_contig10592.413.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4322bp|location=Sequence derived from alignment at S-dermatodea_contig10592:1643..5964- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTGCCGCAGGGTTCCATGGGGCGCGAGCTACTCGGCGAGGGCTCGTTCAT
GGGGAGAGGCTACAGCATCAAGCGCTGCCAAGGGTTCGTCAGGTGTGACA
TGGACATCGACGCGGAAGTGGTTGGCTGGGTCATCGGGAAAAACGGTGAG
TCAAGTCTCTCGGCGGAGAGAAAAGGGAGGGAGAGGAAGAGGAGAGCGGA
AAAAAATTGGGCTTTTGTTTTGTTAAATGTTTTTCTGAAAAAAAAATGTA
TTGTTTCTTGCGTACTGTGCTTCTGTGTTTGGCTCTCTTTCGTGCGATGG
CGATGGTGACTCACACGCCTAAGGAAGTAGTAGTCTAGAAGTAGAGTTGT
AAATTTCAGACATTTACGTACTTTGCCCTCCGCTCCGAAGCGCAACAGCC
GCACCGCATTTTTGATACAAATATCAAGTAAAAGTATGCACCCTGAATAC
AATTTCAAGCGTGCGTTGTAATCCCGAGTTGGGAAAGACGAGTCAGTTCG
TCAGTTCATTTCATCGATCGAGAGTAAAATCAGTCAGTATGTAGGGTGCC
CACGAAAACAAAACTATTCCCCAGCTCTCTCGTACGAGCATCCGCCCCGC
CCGCATACCATCTGCCCGAGGCACTTGCTCTATCTCTGGCGGCGTCATGC
TGTGGCTCCGTCGGGTGTTTTTCATCGTCGGAAACAATTTCCCGTCGCCC
AGTCGAACAGGCAACCGAAATCTGACATGAGGCTGATGTGACAGGACTCT
TCTTTGTCTGCGGAACTCGTAGAACGGGATTTTGTCGGGGGAGTTTTTTT
TTCGCAAGATGGAGTGTTGGTTGCCCCATCGGGCCAGCCCTGTCCGGCCC
CCCTTGACCGTGACTGCCCGCCTCGTTTGTGGGTGAAAATCATTTTCGCT
CAGCTGTGATTTTGTCGGTTCAGTCGATTCAGTCCCCCACAGCGTATGGT
GGTTGTAAATATGTGTAATACGAGTATTGTATAAGGTTATAAAGTCTGGT
TGCTCCTTGCCTTTTCTGTGATTCGTGCTGTGTTTTGCCTTGTTTGTTTT
CTTAATTGTTTCATCTTGATGTTTGCATGTGTGTGTGATGGATGTACCAG
TACGTACTAATGCACAGACTGTTCGTTTGCAGCAAGAGCTATGATTCTTG
CACAAGTATGATACAGTAGAGCTCTATGGGAATTGCGTGGTGTGTTCTCC
TTTTTCCTTCGAAAGGCACTTCAACTTTGTTTTTGTCCCATTATTAGTCC
AGAAGTTAATCGAGCACTTTCCTCTGGTTGAACATGACTCCATGAGTATC
ATAAGCCCGGAGATGAAGCTCTTGCGTGATATTTCCCAGTTTTATTTTTT
TGCTCTGCTCGCTCCAGCCACCCGATAGACGCGACACCCCTCTCTCTTTT
CTCTCCGCTTCCCGGCCGCCATGCATGGGGTACTTGTTGTTGAACTGAAA
GGCCTGATCGATTCATTTATTTCGGTAGTAATATGGTCCCGTCTCACCGA
CTCTTTTTTTCTGTTTTTCTTTTTTCCAGATGATACTGTTTCGCGCCGCC
GCGGAGAAAATATTTGTATTTTTGAAACATACAATTTGTGTAATTGGCGG
GTTTCTCCATGCCGGCTAATATACCATAGAGCTAGACAAGGAGCGTATGA
TATGTGTGTGTGCTTGGTGTGTTTGGTGTGCTATCAAGGGCGTAAACTAA
ACCCCCGTCAGAAAAGTATGTTCGAATTTGCAGACGTCTTCTCGAGACGG
CCCTGTCTCACCCCGGCCTGTGTTTTGTGTGCGTTGTGCGTCCCGATGGC
TTTCCGTTGACTGCAGCCGCCGCCGAGCATACCGTTGCGTGCCAACGGCG
TGACCCATCGTTGACACATTTTTTCCACCGACTTCCTCTGAACGTCGTAT
GTGTGTATTGAAGGCGGCTCCTTTGTTTCCTCTTCTCTCCGACGACGAGA
TACTCATTTTTTTTTCATTTTTTTTCCGCAATATCCCCTTCATACCCCGA
GTATAAATAACCAACATCGTATATTCCTTTGTTTCCTGTTCTCTCCGACG
ACGAGATACTCATTTTTGTTTTCATTTTTTTTCCGCAATATCCCTTTCAT
ACCCCGAGTACAAACAACCAACATCGTATATACAACGGTAGTAACCGTCG
GAGGGCCCGGCCGCTGTGTGAAAAGCAAGTCGGGTGGAGGCGCAAGTTGC
CCACCGCATAGTTTAGTTTTTCGCCAAAACCTGCGGCGATCGGTATATCG
GCGCTTCTCCTCGTTTGCAGCAGGCAGCATCGTAGTATTATACCAAGCAT
TGAAGTATCGCAGTACACGTGTACGAGTACGGTGGCAGAGGAAGAAAAGG
GTCGGACGGGGTCCGACCTTTTAAACCTTGGTTCATTATCAATAGTAAGT
ATCGCACATAGAACAGCTGGGTACAACAACAGTTGTCGTGTGGATCACAA
TGTATGGGCGTTTGAGATGAAAATACTGCTCTAACTTCTTGCCCCGATAT
ATTAGTCTCTTGACAAAGGGTCAGTTTTTATTTCTCCGCACCTCGGAATA
CGTGGGAGTGCTTGCGACCGCTTTTATTGTTGCGCCCTCTCTGCTTTTCT
CTTTTGTGTTCTTCCTCGGGCGGAATGTTTTTTTTTACGGTGACGGGCGT
CTGCGACGTATGCCCTCGTCGCGCTTCGCCCTCGGTCTGACAAAATCCTT
GACGCTCGCTCGCAGGATACACTACTCCCTTACAGAACCTAGCATTGATA
TAAATGCGCATATTACAGTAGACATGTCACAAATTGATTGCTCATCGTTG
TTTCCCCTTGCGTCTTTTTGTCTTCACCGCTCTTTCGCGTCCTTTTTTCT
TTCCGCACACCATTGCAGGAAGCACGATCAAGGACATGAAGCACAAGACG
GGGTGCAACATGTGGGTTGACCAGCGGGCGCTGAAGCTGACCATCACGGG
CCCGGACCTGGCGTCCGTCGAGCACGCGGCCAAGTCCGTGGACGCGTACG
TCGCGGCAGCGCCCATCAAGGCCGGTGCCGTCGAGGCCGCGGTGACCAAG
ACCCTCGAGTGCCCCCCGCACCTCCTCGACGTTCTGGGAGACCGCACCAC
GATCGCCCGCATAGTGAAAGAGACCCACGCCCAGGTAGTTGTAAACAAGA
AAATCGGGCGCATCATCGTGCGCGGGGATCACCGCTCGGTCGACCTCGCG
TACACCAGCGTGCAGGCCACCATCCACGCCGCAATTCACGGCGGGCTCGG
GCTAAGGGTCAACACTCCCGAGAGCCTCGGCCCCCACGGCGGGGCCGGTT
ACTTTTCGAGCGGTGGCGGCGGCGGCGGCGCAGCGCGTTCCACGGGCGGC
CTGTCTCCCTTGGAGGGAATGGGAGGCGGCGCGGCGAGCGGGGCTGGCAT
GCAAATGCTGCCCACCCACGTCTCGGAGTTCCGCCCCATGGACGTGCCGG
AGTACCGCAGCGTGGGGTCCTGGCAGCAGCAGCAGCAGCAGCACGACCTT
CACGCTCACGCCCAGATGCAGCGCCACCACAACCACAGGGGCGGGGACGG
CCGCGGCTCGGACACAGACGAATCGGAGATCGAAACGTTGTCGTTCGGAT
CGATCGGCGCGCGCACGCCGGTGAGCTCGGCCGCGGGCTCTCCTCGCGTT
GGGGCGTCGTACAACACAAGCCCTGCCCTGTCCGGAACCGCCTCGACCCC
GGGCGGCGACTGGTCGCTGTTCTCGGGCGGATTCAGGCTTGGTGTGAACG
CCCTTCAGGAGGACTCGTCCTGCTCGAGCACGCCGACCACCGCTAGGGCG
ACCCCGCGAGTGCACTTCCCCGAGGGCCTTCAGGCCCTGAGCGGCAACGA
CGTTGCGGGGGCGGAGGGCGGCGACGCACAGGGCGATGACGGTGAGGATC
AGAAGGAGACCGCCGATGACGCCGGCAAGAGCGGCGGCGCCGCCGCTGCC
GTCGGAGGCTTGGCGGGCGCGCACGCACCCCCTCCGTCCCCGGCGTCTAC
GACGAGCGGTGAGCCCTCGCGCAAGGTGCGTGGGCCGTTGGCCGGGGCGT
ACGCGGTGGACGCTCTGGAGAGCGGCGATGGAGAAGACAGCGAGACCGAG
GGTGAAGACATCGCGGACAAGGTGGCGCGCCTTGGGAAGCGGCTGCAGGC
GATGGGGCTCGGCAAGTACTGCCCGAAGTTCGCCGAGAATGAGGTAGACT
TGGAGGCGCTCGGGCTGATGAGCGAGAGCGACCTTGCCGACATAGGCATC
CCGAAGGGGCCCAGGCTGAAGATCCTCAATGCCGTCGGCAACCGCGGCGG
CCTTAACCACACCGACGTCTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10592:1643..5964-

>mRNA_S-dermatodea_contig10592.413.1 ID=mRNA_S-dermatodea_contig10592.413.1|Name=mRNA_S-dermatodea_contig10592.413.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3168bp|location=Sequence derived from alignment at S-dermatodea_contig10592:1643..5964- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGGCGCGAGCTACTCGGCGAGGGCTCGTTCATGGGGAGAGGCTACAG
CATCAAGCGCTGCCAAGGGTTCGTCAGGTGTGACATGGACATCGACGCGG
AAGTGGTTGGCTGGGTCATCGGGAAAAACGGTGAATGGGGCGCGAGCTAC
TCGGCGAGGGCTCGTTCATGGGGAGAGGCTACAGCATCAAGCGCTGCCAA
GGGTTCGTCAGGTGTGACATGGACATCGACGCGGAAGTGGTTGGCTGGGT
CATCGGGAAAAACGGTGACACGATCAAGGACATGAAGCACAAGACGGGGT
GCAACATGTGGGTTGACCAGCGGGCGCTGAAGCTGACCATCACGGGCCCG
GACCTGGCGTCCGTCGAGCACGCGGCCAAGTCCGTGGACGCGTACGTCGC
GGCAGCGCCCATCAAGGCCGGTGCCGTCGAGGCCGCGGTGACCAAGACCC
TCGAGTGCCCCCCGCACCTCCTCGACGTTCTGGGAGACCGCACCACGATC
GCCCGCATAGTGAAAGAGACCCACGCCCAGGTAGTTGTAAACAAGAAAAT
CGGGCGCATCATCGTGCGCGGGGATCACCGCTCGGTCGACCTCGCGTACA
CCAGCGTGCAGGCCACCATCCACGCCGCAATTCACGGCGGGCTCGGGCTA
AGGGTCAACACTCCCGAGAGCCTCGGCCCCCACGGCGGGGCCGGTTACTT
TTCGAGCGGTGGCGGCGGCGGCGGCGCAGCGCGTTCCACGGGCGGCCTGT
CTCCCTTGGAGGGAATGGGAGGCGGCGCGGCGAGCGGGGCTGGCATGCAA
ATGCTGCCCACCCACGTCTCGGAGTTCCGCCCCATGGACGTGCCGGAGTA
CCGCAGCGTGGGGTCCTGGCAGCAGCAGCAGCAGCAGCACGACCTTCACG
CTCACGCCCAGATGCAGCGCCACCACAACCACAGGGGCGGGGACGGCCGC
GGCTCGGACACAGACGAATCGGAGATCGAAACGTTGTCGTTCGGATCGAT
CGGCGCGCGCACGCCGGTGAGCTCGGCCGCGGGCTCTCCTCGCGTTGGGG
CGTCGTACAACACAAGCCCTGCCCTGTCCGGAACCGCCTCGACCCCGGGC
GGCGACTGGTCGCTGTTCTCGGGCGGATTCAGGCTTGGTGTGAACGCCCT
TCAGGAGGACTCGTCCTGCTCGAGCACGCCGACCACCGCTAGGGCGACCC
CGCGAGTGCACTTCCCCGAGGGCCTTCAGGCCCTGAGCGGCAACGACGTT
GCGGGGGCGGAGGGCGGCGACGCACAGGGCGATGACGGTGAGGATCAGAA
GGAGACCGCCGATGACGCCGGCAAGAGCGGCGGCGCCGCCGCTGCCGTCG
GAGGCTTGGCGGGCGCGCACGCACCCCCTCCGTCCCCGGCGTCTACGACG
AGCGGTGAGCCCTCGCGCAAGGTGCGTGGGCCGTTGGCCGGGGCGTACGC
GGTGGACGCTCTGGAGAGCGGCGATGGAGAAGACAGCGAGACCGAGGGTG
AAGACATCGCGGACAAGGTGGCGCGCCTTGGGAAGCGGCTGCAGGCGATG
GGGCTCGGCAAGTACTGCCCGAAGTTCGCCGAGAATGAGGTAGACTTGGA
GGCGCTCGGGCTGATGAGCGAGAGCGACCTTGCCGACATAGGCATCCCGA
AGGGGCCCAGGCTGAAGATCCTCAATGCCGTCGGCAACCGCGGCGGCCTT
AACCACACCGACGTCTGACACGATCAAGGACATGAAGCACAAGACGGGGT
GCAACATGTGGGTTGACCAGCGGGCGCTGAAGCTGACCATCACGGGCCCG
GACCTGGCGTCCGTCGAGCACGCGGCCAAGTCCGTGGACGCGTACGTCGC
GGCAGCGCCCATCAAGGCCGGTGCCGTCGAGGCCGCGGTGACCAAGACCC
TCGAGTGCCCCCCGCACCTCCTCGACGTTCTGGGAGACCGCACCACGATC
GCCCGCATAGTGAAAGAGACCCACGCCCAGGTAGTTGTAAACAAGAAAAT
CGGGCGCATCATCGTGCGCGGGGATCACCGCTCGGTCGACCTCGCGTACA
CCAGCGTGCAGGCCACCATCCACGCCGCAATTCACGGCGGGCTCGGGCTA
AGGGTCAACACTCCCGAGAGCCTCGGCCCCCACGGCGGGGCCGGTTACTT
TTCGAGCGGTGGCGGCGGCGGCGGCGCAGCGCGTTCCACGGGCGGCCTGT
CTCCCTTGGAGGGAATGGGAGGCGGCGCGGCGAGCGGGGCTGGCATGCAA
ATGCTGCCCACCCACGTCTCGGAGTTCCGCCCCATGGACGTGCCGGAGTA
CCGCAGCGTGGGGTCCTGGCAGCAGCAGCAGCAGCAGCACGACCTTCACG
CTCACGCCCAGATGCAGCGCCACCACAACCACAGGGGCGGGGACGGCCGC
GGCTCGGACACAGACGAATCGGAGATCGAAACGTTGTCGTTCGGATCGAT
CGGCGCGCGCACGCCGGTGAGCTCGGCCGCGGGCTCTCCTCGCGTTGGGG
CGTCGTACAACACAAGCCCTGCCCTGTCCGGAACCGCCTCGACCCCGGGC
GGCGACTGGTCGCTGTTCTCGGGCGGATTCAGGCTTGGTGTGAACGCCCT
TCAGGAGGACTCGTCCTGCTCGAGCACGCCGACCACCGCTAGGGCGACCC
CGCGAGTGCACTTCCCCGAGGGCCTTCAGGCCCTGAGCGGCAACGACGTT
GCGGGGGCGGAGGGCGGCGACGCACAGGGCGATGACGGTGAGGATCAGAA
GGAGACCGCCGATGACGCCGGCAAGAGCGGCGGCGCCGCCGCTGCCGTCG
GAGGCTTGGCGGGCGCGCACGCACCCCCTCCGTCCCCGGCGTCTACGACG
AGCGGTGAGCCCTCGCGCAAGGTGCGTGGGCCGTTGGCCGGGGCGTACGC
GGTGGACGCTCTGGAGAGCGGCGATGGAGAAGACAGCGAGACCGAGGGTG
AAGACATCGCGGACAAGGTGGCGCGCCTTGGGAAGCGGCTGCAGGCGATG
GGGCTCGGCAAGTACTGCCCGAAGTTCGCCGAGAATGAGGTAGACTTGGA
GGCGCTCGGGCTGATGAGCGAGAGCGACCTTGCCGACATAGGCATCCCGA
AGGGGCCCAGGCTGAAGATCCTCAATGCCGTCGGCAACCGCGGCGGCCTT
AACCACACCGACGTCTGA
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