mRNA_S-dermatodea_contig10588.410.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10588.410.1
Unique NamemRNA_S-dermatodea_contig10588.410.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10588.410.1 vs. uniprot
Match: B5LWK0_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWK0_9PHYC)

HSP 1 Score: 84.3 bits (207), Expect = 5.440e-17
Identity = 42/87 (48.28%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:  127 ARLSYFEGENIYPNEWTNSCLTVLEAQLLECQTSAAAYGEAAR*ARKKHRMLSIPLIVVGTTATVLSFLPAGDVCIPDDEEDGNGLK 387
            ARLS FE E ++ N+WTN+ L +LE    +C+ +++AY +AAR AR KHR +SIP IVV + AT  SF  AG  C  DD+E+   +K
Sbjct:    6 ARLSNFEAERVFENDWTNASLDLLEGLHKQCKDNSSAYADAARVARWKHRAVSIPTIVVASFATATSFFSAGSSC--DDDEENTAVK 90
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BLAST of mRNA_S-dermatodea_contig10588.410.1 vs. uniprot
Match: Q6XM51_9PHYC (FirrV-1-A36 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM51_9PHYC)

HSP 1 Score: 82.4 bits (202), Expect = 3.090e-16
Identity = 43/86 (50.00%), Postives = 56/86 (65.12%), Query Frame = 1 
Query:  130 RLSYFEGENIYPNEWTNSCLTVLEAQLLECQTSAAAYGEAAR*ARKKHRMLSIPLIVVGTTATVLSFLPAGDVCIPDDEEDGNGLK 387
            RLS FE E I+ N WTN+ + +LE    +C+T+A+AY  AAR AR K+RMLSIP IVV + AT  SF  AG  C   + E+ N +K
Sbjct:   10 RLSAFEAEKIFDNGWTNASMDLLEDMCKQCRTNASAYARAARTARWKYRMLSIPSIVVASFATATSFFSAGSSC---EAEESNAIK 92
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BLAST of mRNA_S-dermatodea_contig10588.410.1 vs. uniprot
Match: Q8QNA3_ESV1K (EsV-1-184 n=2 Tax=root TaxID=1 RepID=Q8QNA3_ESV1K)

HSP 1 Score: 81.3 bits (199), Expect = 3.220e-15
Identity = 46/101 (45.54%), Postives = 62/101 (61.39%), Query Frame = 1 
Query:    1 YDATTMSDAKARTERTIGNMKKENPRQSSKGFVNEGLEVKTNARLSYFEGENIYPNEWTNSCLTVLEAQLLECQTSAAAYGEAAR*ARKKHRMLSIPLIVV 303
            Y A TM+ A+   ER      K     + K  V+ GL+V TNARLS+F+ E +Y N+W NS L ++E  L EC  S+ A+ EAAR  R+K+RML IP I+V
Sbjct:   35 YGADTMAQARENRERLARITSK-----TKKHTVDPGLQVGTNARLSHFQKEKLYQNDWNNSVLDLMENLLYECTQSSKAHAEAARGCRRKYRMLMIPSIIV 130
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10588.410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
B5LWK0_9PHYC5.440e-1748.28Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XM51_9PHYC3.090e-1650.00FirrV-1-A36 n=1 Tax=Feldmannia irregularis virus a... [more]
Q8QNA3_ESV1K3.220e-1545.54EsV-1-184 n=2 Tax=root TaxID=1 RepID=Q8QNA3_ESV1K[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10588contigS-dermatodea_contig10588:1667..2291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size625
Cds size255
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924164.2826977-CDS-S-dermatodea_contig10588:1666..19211622924164.2826977-CDS-S-dermatodea_contig10588:1666..1921Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10588 1667..1921 -
1694079061.606965-CDS-S-dermatodea_contig10588:1666..19211694079061.606965-CDS-S-dermatodea_contig10588:1666..1921Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10588 1667..1921 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924164.29364-UTR-S-dermatodea_contig10588:1921..22911622924164.29364-UTR-S-dermatodea_contig10588:1921..2291Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10588 1922..2291 -
1694079061.6156728-UTR-S-dermatodea_contig10588:1921..22911694079061.6156728-UTR-S-dermatodea_contig10588:1921..2291Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10588 1922..2291 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10588.410.1prot_S-dermatodea_contig10588.410.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10588 1667..1921 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10588.410.1

>prot_S-dermatodea_contig10588.410.1 ID=prot_S-dermatodea_contig10588.410.1|Name=mRNA_S-dermatodea_contig10588.410.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=85bp
MVTDLKHSVALLTVIVSIGNGVSELYPFSNKMALCIGASGAFTNLARRIR
TQLFLPNHFRSQAEVCLVDVGIERAHFVNTSSLL*
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mRNA from alignment at S-dermatodea_contig10588:1667..2291-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10588.410.1 ID=mRNA_S-dermatodea_contig10588.410.1|Name=mRNA_S-dermatodea_contig10588.410.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=625bp|location=Sequence derived from alignment at S-dermatodea_contig10588:1667..2291- (Saccorhiza dermatodea SderLu1190fm monoicous)
TATGATGCCACCACGATGAGCGACGCGAAGGCTCGTACCGAGAGAACGAT
CGGCAATATGAAGAAGGAAAACCCAAGGCAGTCGTCTAAGGGGTTTGTGA
ACGAGGGCCTCGAGGTGAAAACGAACGCTCGTCTGAGTTATTTTGAGGGG
GAAAACATCTACCCGAACGAATGGACGAATTCATGCTTAACTGTTCTCGA
GGCACAGCTCCTTGAATGCCAAACGTCCGCCGCTGCCTACGGAGAGGCCG
CGCGCTAGGCCAGGAAGAAGCACAGGATGTTGAGTATTCCCCTGATCGTC
GTGGGTACCACCGCGACTGTTCTTTCATTTCTCCCCGCTGGTGACGTGTG
TATCCCCGACGACGAGGAGGATGGTAACGGACTTAAAACACAGCGTGGCT
CTTTTGACTGTCATCGTAAGCATCGGGAACGGTGTCAGCGAGCTGTACCC
ATTCTCCAACAAGATGGCTCTTTGCATCGGGGCCAGCGGGGCGTTTACGA
ACCTTGCACGGCGCATTAGGACACAGTTGTTCCTCCCGAACCATTTCAGA
TCTCAGGCGGAGGTGTGTCTGGTAGACGTTGGGATAGAACGCGCGCATTT
CGTGAATACATCTTCCCTTCTTTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10588:1667..2291-

>mRNA_S-dermatodea_contig10588.410.1 ID=mRNA_S-dermatodea_contig10588.410.1|Name=mRNA_S-dermatodea_contig10588.410.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at S-dermatodea_contig10588:1667..2291- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTAACGGACTTAAAACACAGCGTGGCTCTTTTGACTGTCATCGTAAG
CATCGGGAACGGTGTCAGCGAGCTGTACCCATTCTCCAACAAGATGGCTC
TTTGCATCGGGGCCAGCGGGGCGTTTACGAACCTTGCACGGCGCATTAGG
ACACAGTTGTTCCTCCCGAACCATTTCAGATCTCAGGCGGAGGTGTGTCT
GGTAGACGTTGGGATAGAACGCGCGCATTTCGTGAATACATCTTCCCTTC
TTTGAATGGTAACGGACTTAAAACACAGCGTGGCTCTTTTGACTGTCATC
GTAAGCATCGGGAACGGTGTCAGCGAGCTGTACCCATTCTCCAACAAGAT
GGCTCTTTGCATCGGGGCCAGCGGGGCGTTTACGAACCTTGCACGGCGCA
TTAGGACACAGTTGTTCCTCCCGAACCATTTCAGATCTCAGGCGGAGGTG
TGTCTGGTAGACGTTGGGATAGAACGCGCGCATTTCGTGAATACATCTTC
CCTTCTTTGA
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