mRNA_S-dermatodea_contig10586.408.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10586.408.1
Unique NamemRNA_S-dermatodea_contig10586.408.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10586.408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10586contigS-dermatodea_contig10586:4591..6493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size517
Cds size396
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10586.408.1prot_S-dermatodea_contig10586.408.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10586 6098..6493 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924164.1958654-UTR-S-dermatodea_contig10586:4590..46641622924164.1958654-UTR-S-dermatodea_contig10586:4590..4664Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10586 4591..4664 -
1694079061.5616367-UTR-S-dermatodea_contig10586:4590..46641694079061.5616367-UTR-S-dermatodea_contig10586:4590..4664Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10586 4591..4664 -
1622924164.204524-UTR-S-dermatodea_contig10586:6050..60971622924164.204524-UTR-S-dermatodea_contig10586:6050..6097Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10586 6051..6097 -
1694079061.5717041-UTR-S-dermatodea_contig10586:6050..60971694079061.5717041-UTR-S-dermatodea_contig10586:6050..6097Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10586 6051..6097 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924164.2155926-CDS-S-dermatodea_contig10586:6097..64931622924164.2155926-CDS-S-dermatodea_contig10586:6097..6493Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10586 6098..6493 -
1694079061.5818148-CDS-S-dermatodea_contig10586:6097..64931694079061.5818148-CDS-S-dermatodea_contig10586:6097..6493Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10586 6098..6493 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10586.408.1

>prot_S-dermatodea_contig10586.408.1 ID=prot_S-dermatodea_contig10586.408.1|Name=mRNA_S-dermatodea_contig10586.408.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=132bp
PVGASLCRDPAALRRATTAKKQQHQNHKARFPPRISVFEFSPACANYYCC
SCSEQKSFWAAICFSCRCLRNNDRRLVETLRYNVITITKRDLRQPCASAY
PRRHKRGCRQERRLNTRRRSCQETGSLTLKA*
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mRNA from alignment at S-dermatodea_contig10586:4591..6493-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10586.408.1 ID=mRNA_S-dermatodea_contig10586.408.1|Name=mRNA_S-dermatodea_contig10586.408.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1903bp|location=Sequence derived from alignment at S-dermatodea_contig10586:4591..6493- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTGTAGGAGCCTCGCTCTGCCGTGACCCTGCAGCCCTTCGCCGAGCAAC
GACAGCGAAGAAGCAGCAGCACCAGAATCACAAAGCACGGTTCCCGCCGC
GCATTAGTGTTTTTGAGTTCTCGCCCGCCTGCGCCAACTACTACTGCTGC
TCCTGCTCTGAACAAAAATCATTTTGGGCGGCAATTTGTTTTTCGTGTCG
GTGTCTGCGAAACAACGACAGGAGGCTGGTTGAGACACTGAGATACAACG
TCATCACCATCACAAAGCGGGACCTCCGCCAGCCCTGCGCCAGCGCTTAT
CCCCGCCGACACAAGCGGGGTTGTCGCCAGGAGCGCCGACTAAACACCCG
CAGGAGGAGCTGCCAGGAGACGGGGAGCTTGACGCTAAAGGCTTAGCGCA
TTGCGTCACATACTTCCGCGCGCGAGTGTGATCTCCTAGGGCGGTGAGCA
CAAGCACGTGGCGGTAACACTTTATAGCTCAATGTACCAATGTACAATGT
ATTATCATACAGCGGTAACAATAGTCGTCCTTGTTTTGCCTTGTGATGAG
CGCGTCACAGGCATCTCCCATGTCTGTTATGTTGATGTCTGAATTGTGGA
CGCTTCTTCTCTTCGTGTCCATGTTCGAAGCTTGAATGATGCTCGGAGGC
ACGGGCCCGCAGTGGCGACAGTCGAGAGACCGCCCAGAGAGTGGGGGTGA
GGTATGTCTGCCGGCGGAAGCGCGGTCGGCAAACAAAAATCGAAACCAGC
GCACCTCCCCAGCCCTCCCATATACATAGACCACTTCCCTAGACACAACG
ACCATGACCAAAGCCAGCTTCGCTCAAGCGAAGTTCAATAGGTTTTCTCT
TATAAATCTCTTCTCGTGTTTGTCTGCATGCCTTGGGGTGAGATGGATGC
ATGTCGTGGACCTGCCATAGACGATGCGGTGTAGATATCACGCGTCGTGG
CAGCATCGGCGCGCACAGCCGAGCCGCTCACCCCCCCCCCCTCTGATACG
TGCTCTCACGAGCGACCGCAAGCGAAAAGCGGACAGAGAAGCAGTTAGAG
CAACCTATTTCATATATTTTATGTATACAAATCATTTGCTACTGCATTTG
CCATGGATTGGGCCGCGGCCCGGCTGGCTCTTCATTTCTACATTTTGACA
CCTGCGCCCTTGTAAACGCTGCTGCTCTGTTGTACCTGGTATGTTGTAAT
TGGTGATGATGTATGATGCACTTTCGAATGACCCCATGATATACCGGTAC
AAAAGAGGATTCACTTGCGTGCATACAGAGTAGCTCTACTGCTGCAGCTC
AACAAGTACTGCTACAGAACCTCTATAAAGGACACACGTATCATATTATA
TGCACCCAGATCGGCTACGATTGATTGATTGATTGATTGATTTGCACACG
TATAGCCGATCGGCATAATCCGACCGGACTTGTGGTCAGACACGCAAAGA
GTCAAGGAGAAAATAACTAATCATATCATATAATAATACTTCGTATAATA
TAACCTAATATAATATATAATACGTAATACGTGTACAAATCCATAAATCA
GTCAAATCAAAATCCACGACACCTGATTATGTTTCTGAAATATTTGATTT
GTGAGCTTGTTTTTTATCCAAGTATGTACAGCAACAACCAACAACAGCGG
AAGTATTAGTATGATAGTACGATATCGTATCATATCATAGTGTATGTATT
TTTTTGATATGTACAAGGATATGTCTGATGTACAAGAACTTGTACAAGCT
TATTCTTTGCCTCTCGCTCGTTTCAATTTCCAATCACAATTACCACATAC
GCCCTCTGGGCTGTTGCTCTGGAAATCAGGCGCTGGCACTGCTCTGCTTT
TGAGGACGCCGGACACCCACACCGACCGGCCGGAGCAGGGCGATGGACCG
CGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10586:4591..6493-

>mRNA_S-dermatodea_contig10586.408.1 ID=mRNA_S-dermatodea_contig10586.408.1|Name=mRNA_S-dermatodea_contig10586.408.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at S-dermatodea_contig10586:4591..6493- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTGTAGGAGCCTCGCTCTGCCGTGACCCTGCAGCCCTTCGCCGAGCAAC
GACAGCGAAGAAGCAGCAGCACCAGAATCACAAAGCACGGTTCCCGCCGC
GCATTAGTGTTTTTGAGTTCTCGCCCGCCTGCGCCAACTACTACTGCTGC
TCCTGCTCTGAACAAAAATCATTTTGGGCGGCAATTTGTTTTTCGTGTCG
GTGTCTGCGAAACAACGACAGGAGGCTGGTTGAGACACTGAGATACAACG
TCATCACCATCACAAAGCGGGACCTCCGCCAGCCCTGCGCCAGCGCTTAT
CCCCGCCGACACAAGCGGGGTTGTCGCCAGGAGCGCCGACTAAACACCCG
CAGGAGGAGCTGCCAGGAGACGGGGAGCTTGACGCTAAAGGCTTAGCCTG
TAGGAGCCTCGCTCTGCCGTGACCCTGCAGCCCTTCGCCGAGCAACGACA
GCGAAGAAGCAGCAGCACCAGAATCACAAAGCACGGTTCCCGCCGCGCAT
TAGTGTTTTTGAGTTCTCGCCCGCCTGCGCCAACTACTACTGCTGCTCCT
GCTCTGAACAAAAATCATTTTGGGCGGCAATTTGTTTTTCGTGTCGGTGT
CTGCGAAACAACGACAGGAGGCTGGTTGAGACACTGAGATACAACGTCAT
CACCATCACAAAGCGGGACCTCCGCCAGCCCTGCGCCAGCGCTTATCCCC
GCCGACACAAGCGGGGTTGTCGCCAGGAGCGCCGACTAAACACCCGCAGG
AGGAGCTGCCAGGAGACGGGGAGCTTGACGCTAAAGGCTTAG
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