mRNA_S-dermatodea_contig10578.402.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig10578.402.1 vs. uniprot
Match: D8LF43_ECTSI (RPA_interact_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF43_ECTSI) HSP 1 Score: 249 bits (635), Expect = 3.940e-79 Identity = 122/171 (71.35%), Postives = 140/171 (81.87%), Query Frame = 1
Query: 25 MDGDDV-WEENGAFRD---EEHMLSPEEYLEMMQYIEEACRQEDLNAEAEAIEEYELNRRLEEEAVESAVASGLDFDDNGQDNSVLCPVCKRNYLLQAGAPSASIVCVCGFRLDTGGDRLGLEHLRQQLAETYEQHRTGCSAEPSFSVEGSPGLDVLWSSCDGCGFARVVL 525
+D D++ W + G D EEH+LSP+EYLEMMQYIEEAC++ED AEA +E+YEL RRLEEE VE AVAS D + NGQD++VLCPVCKR+YLL G PSASIVC CGFRLDTGGDRLGLEH +QQLA+TY +H T CSAEPSF VEG+PG DVLWSSCDGCGFARVVL
Sbjct: 2 VDEDELGWGDGGGAEDDCDEEHLLSPDEYLEMMQYIEEACKEEDFRAEAAVLEDYELTRRLEEEEVEYAVASLDDINGNGQDDAVLCPVCKRDYLLHPGPPSASIVCACGFRLDTGGDRLGLEHFKQQLADTYSEHSTACSAEPSFVVEGAPGFDVLWSSCDGCGFARVVL 172
BLAST of mRNA_S-dermatodea_contig10578.402.1 vs. uniprot
Match: A0A835YX80_9STRA (Replication protein A interacting C-terminal-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX80_9STRA) HSP 1 Score: 103 bits (256), Expect = 6.490e-23 Identity = 60/155 (38.71%), Postives = 81/155 (52.26%), Query Frame = 1
Query: 82 LSPEEYLEMMQYIEEACRQEDLNAEAEAIEEYELNRRLEEE-------AVESAVASGLDFDDNGQDNSVLCPVCKRNYLLQAGAPSASIVCVCGFRLDTGGDRLGLEHLRQQLAETYEQHRTGCSAEPSFSVEGSPGLDVLWSSCDGCGFARVVL 525
L+PEEY +MM +IE+A E A+A A + A+ + +D+ VLCPVCK +LLQ GA +I+C CGFRL T G+ + L LRQ LAE + HR C +P+F V G +LWS C CGF ++VL
Sbjct: 5 LTPEEYTDMMLFIEQALAAELARADASXXXXXXXXXXXXXXXXXXXXXAALARAAAEAEDGRGWRDDEVLCPVCKGGWLLQHGA---TIMCTCGFRLQTDGEGMQLGVLRQALAEVFTDHRERCHLQPTFRVREEFGAAMLWSECSACGFEQIVL 156
BLAST of mRNA_S-dermatodea_contig10578.402.1 vs. uniprot
Match: A0A833R3L3_9POAL (RPA-interacting protein A n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833R3L3_9POAL) HSP 1 Score: 82.8 bits (203), Expect = 1.190e-14 Identity = 64/175 (36.57%), Postives = 88/175 (50.29%), Query Frame = 1
Query: 4 ALPQPEAMDGDDVWEENGAFRDEEHMLSPEEYLEMMQYIEEACRQEDLNAEAEAIEEYELNRRLEEEAVESAVASGLDFDDNGQDNSVLCPVCKRNYLLQAGAPSASIVCVC-GFRLDTGGDRLGLEHLRQQLAETYEQHRT-GCSAEPSFSVEGSPGLDVLWSSCDGCGFARVV 522
ALP E + D +WE F + S E LEM + + + R+E + E E +EE ++ LEE+A E + ++ G +N V CPVCK+ L +A I C C RLD G D++ LE LR QLAE + H GC + P F VE + GL L C+ C VV
Sbjct: 74 ALPLNE-KENDQIWEHEDQFGNVTE--SEEALLEMERLLYQELREELIRRELEFLEE--VDAYLEEQAFEHMQLN----ENQGVENKVWCPVCKKGELKEA---HNLIYCTCCNMRLDIGDDKVNLEFLRDQLAEVHMVHLDRGCKSTPKFCVETNFGLTALCIKCEVCCTFEVV 236
BLAST of mRNA_S-dermatodea_contig10578.402.1 vs. uniprot
Match: A0A1S3K953_LINUN (RPA-interacting protein A isoform X2 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3K953_LINUN) HSP 1 Score: 76.3 bits (186), Expect = 1.920e-12 Identity = 42/128 (32.81%), Postives = 64/128 (50.00%), Query Frame = 1
Query: 166 IEEYELNRRLEEEAVESAVASGLDFDDNG--------QDNSVLCPVCKRNYLLQAGAPSASIVCVCGFRLDTGGDRLGLEHLRQQLAETYEQHRTGCSAEPSFSVEGSPGLDVLWSSCDGCGFARVVL 525
+EE + LEE+ + L FD+ G + + V+CP+CK+N L+Q I C CG R+DT D L + +++ QL E H T C E FSV G++ L +C+ C F +V+
Sbjct: 99 LEEIKSELLLEEQRILEEYEKSLAFDEAGLCAAIDQLKTDEVICPICKKNPLMQN---KQIIFCCCGMRIDTELDGLNIANIKSQLEEGISLHNTQCVKEAKFSVMKQAGVENLLMTCETCDFMFIVI 223
BLAST of mRNA_S-dermatodea_contig10578.402.1 vs. uniprot
Match: D8R075_SELML (Uncharacterized protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R075_SELML) HSP 1 Score: 76.3 bits (186), Expect = 2.240e-12 Identity = 59/175 (33.71%), Postives = 90/175 (51.43%), Query Frame = 1
Query: 28 DGDDVWEENGAFRDEEHMLSPEEYLEMMQYIEEACRQ----EDLNAEAEAIEEYELNRRLEEEAVESAVASGLDFDDNGQDNSVLCPVCKRNYLLQAGAPSASIVCVCGFRLDTGGDR----LGLEHLRQQLAETYEQH-RTGCSAEPSFSVEGSPGLDVLWSSCDGCGFARVVL 525
DGD +W + A LSP+EY ++M ++ Q E + +E+YE LE+ S++AS L + N Q+N VLCP+C+R +LL SI C LD G R +G+E +R +LAE +QH +GCS++P F+ + L+ C+ C F VV+
Sbjct: 69 DGDMLWNYSSAGSKSPSELSPQEYEDLMLAMQAVLYQGTYPEQQQHAIDDLEDYEKATALED----SSLASLL--EQNHQENGVLCPLCRRGFLLDK---ENSIRCSSNGCLDLGSQRDKLKVGVEFVRIRLAELMDQHYSSGCSSQPVFTFKDE--FQSLFILCNSCDFFEVVV 232
BLAST of mRNA_S-dermatodea_contig10578.402.1 vs. uniprot
Match: A0A1S3K944_LINUN (RPA-interacting protein B isoform X1 n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3K944_LINUN) HSP 1 Score: 76.3 bits (186), Expect = 2.840e-12 Identity = 42/128 (32.81%), Postives = 64/128 (50.00%), Query Frame = 1
Query: 166 IEEYELNRRLEEEAVESAVASGLDFDDNG--------QDNSVLCPVCKRNYLLQAGAPSASIVCVCGFRLDTGGDRLGLEHLRQQLAETYEQHRTGCSAEPSFSVEGSPGLDVLWSSCDGCGFARVVL 525
+EE + LEE+ + L FD+ G + + V+CP+CK+N L+Q I C CG R+DT D L + +++ QL E H T C E FSV G++ L +C+ C F +V+
Sbjct: 123 LEEIKSELLLEEQRILEEYEKSLAFDEAGLCAAIDQLKTDEVICPICKKNPLMQN---KQIIFCCCGMRIDTELDGLNIANIKSQLEEGISLHNTQCVKEAKFSVMKQAGVENLLMTCETCDFMFIVI 247
BLAST of mRNA_S-dermatodea_contig10578.402.1 vs. uniprot
Match: UPI000BA8254F (RPA-interacting protein B-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA8254F) HSP 1 Score: 74.7 bits (182), Expect = 7.400e-12 Identity = 36/91 (39.56%), Postives = 50/91 (54.95%), Query Frame = 1
Query: 253 QDNSVLCPVCKRNYLLQAGAPSASIVCVCGFRLDTGGDRLGLEHLRQQLAETYEQHRTGCSAEPSFSVEGSPGLDVLWSSCDGCGFARVVL 525
Q + V+CPVC+R+ L QAG+ I C CG ++DT D L + QQL + QH C+ P FSV G+ L +C CGF +V+
Sbjct: 142 QRDEVICPVCQRSPLAQAGSV---IFCPCGIQIDTEQDSFTLHNFHQQLDKGITQHTNNCNVSPIFSVRSEYGITNLLITCTACGFMFIVV 229
BLAST of mRNA_S-dermatodea_contig10578.402.1 vs. uniprot
Match: UPI000D1C7D68 (uncharacterized protein LOC9653983 n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C7D68) HSP 1 Score: 75.5 bits (184), Expect = 1.070e-11 Identity = 58/173 (33.53%), Postives = 90/173 (52.02%), Query Frame = 1
Query: 28 DGDDVWEENGAFRDEEHMLSPEEYLEMMQYIEEACRQEDL--NAEAEAIEEYELNRRLEEEAVESAVASGLDFDDNGQDNSVLCPVCKRNYLLQAGAPSASIVCVCGFRLDTGGDR----LGLEHLRQQLAETYEQH-RTGCSAEPSFSVEGSPGLDVLWSSCDGCGFARVVL 525
DGD +W + A LSP+EY ++M ++ Q + + +E+YE LE+ S++AS L + N Q+N VLCP+C+R +LL SI C LD G R +G+E +R +LAE +QH +GCS++P F+ + L+ C+ C F VV+
Sbjct: 142 DGDMLWNYSSAGSKSPSELSPQEYEDLMLAMQAVLYQGTYPEQQQHDDLEDYEKATALED----SSLASLL--EQNHQENGVLCPLCRRGFLLDK---ENSIRCSSNGCLDLGSQRDKLKVGVEFVRIRLAELMDQHYSSGCSSQPVFTFKDE--FQSLFILCNSCDFFEVVV 303
BLAST of mRNA_S-dermatodea_contig10578.402.1 vs. uniprot
Match: A0A3M6V0A9_POCDA (Uncharacterized protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6V0A9_POCDA) HSP 1 Score: 72.4 bits (176), Expect = 5.960e-11 Identity = 51/150 (34.00%), Postives = 75/150 (50.00%), Query Frame = 1
Query: 85 SPEEYLEMMQYIEEACRQEDLNAEAEAIEEYELNRRLEEEAVESAVASGLDFDDNGQDNSVLCPVCKRNYLLQAGAPSASIVCVCGFRLDTGGDRLGLEHLRQQLAETYEQH-RTGCSAEPSF--SVEGSPGLDVLWSSCDGCGFARVVL 525
S +E L ++ I++ E+ N + +YE N + EE ++ +A+ S G ++SV+CPVCKRN L Q + C CG R+DT D L L +LR Q+ H GC+ EP F SV + L + C C F +VL
Sbjct: 108 SLDEVLSLLDEIQKELMDEERNI----LAQYEENLKFEESSLCAAIES------LGTEDSVICPVCKRNPLHQN---KQVVFCACGIRIDTEHDALNLTYLRNQIDGALTIHGEQGCTMEPEFCVSVLQEVAVSNLVALCKACDFLFIVL 244
BLAST of mRNA_S-dermatodea_contig10578.402.1 vs. uniprot
Match: A0A7S0VBY7_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VBY7_9CRYP) HSP 1 Score: 70.1 bits (170), Expect = 1.110e-10 Identity = 52/155 (33.55%), Postives = 77/155 (49.68%), Query Frame = 1
Query: 70 EEHMLSPEEYLEMMQYIEEACRQEDLNAEAEAI-EEYELNRRLEEEAVESAVASGLDFDDNGQDNSVLCPVCKRNYLLQAGAPSASIVCVCGFRLDTGGDRLGLEHLRQQLAETYEQHRT-GCSAEPSFSVEGSPG-LDVLWSSCDGCGFARVVL 525
EE LS EEY+ +MQY+EEA E E E I +E R E A+ ++ A G + V CPVC R+ L + + C CG RL +++ L L L + + H + GC+ +P S++ PG +D+L +C C F VV+
Sbjct: 31 EEDGLSEEEYIGLMQYLEEAVVTELRKQEQEIIAQELFDQERAESNALAASHAEG---------HRVTCPVCMRDTL---HSHRNVVFCGCGMRLSCQTEQVSLVQLESMLLDRFAAHTSSGCANQPVCSIQTVPGGVDMLMMACAACDFMDVVV 173 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10578.402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10578.402.1 >prot_S-dermatodea_contig10578.402.1 ID=prot_S-dermatodea_contig10578.402.1|Name=mRNA_S-dermatodea_contig10578.402.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=168bp MDGDDVWEENGAFRDEEHMLSPEEYLEMMQYIEEACRQEDLNAEAEAIEEback to top mRNA from alignment at S-dermatodea_contig10578:589..2822- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig10578.402.1 ID=mRNA_S-dermatodea_contig10578.402.1|Name=mRNA_S-dermatodea_contig10578.402.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2234bp|location=Sequence derived from alignment at S-dermatodea_contig10578:589..2822- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig10578:589..2822- >mRNA_S-dermatodea_contig10578.402.1 ID=mRNA_S-dermatodea_contig10578.402.1|Name=mRNA_S-dermatodea_contig10578.402.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1008bp|location=Sequence derived from alignment at S-dermatodea_contig10578:589..2822- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |