mRNA_S-dermatodea_contig10569.396.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10569.396.1
Unique NamemRNA_S-dermatodea_contig10569.396.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10569.396.1 vs. uniprot
Match: A0A6H5JFY4_9PHAE (zf-C2HC5 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFY4_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 3.110e-19
Identity = 54/97 (55.67%), Postives = 56/97 (57.73%), Query Frame = 2 
Query:  104 KVRAWFEGELRRMLGFDEVEEIARFALDSFSTSQPAELRQYLEQFLGQSREVQKLCDELFSRRNAAATPGPVLGAGSK------TKPTASDDFWGAG 376
            K RAWFEGELRRMLGFDEVEEIARFALDSF  SQP ELRQYLEQFLGQSR  + L                      K       K    +DFWG G
Sbjct:    3 KTRAWFEGELRRMLGFDEVEEIARFALDSFPVSQPVELRQYLEQFLGQSRGGKSLLTAEGGNNXXXXXXXXXXXXXGKGRGKVYQKAAVEEDFWGGG 99
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BLAST of mRNA_S-dermatodea_contig10569.396.1 vs. uniprot
Match: A0A7S2SAT0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SAT0_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 9.620e-7
Identity = 32/86 (37.21%), Postives = 48/86 (55.81%), Query Frame = 2 
Query:  104 KVRAWFEGELRRMLGFDEVEEIARFALDSFSTSQPAELRQYLEQFLGQSREVQKLCDELFSRRNAAATPGPVLGAGSKTKPTASDD 361
            + +AW  GELR++ GFDEVEE+A + L +F       L+Q+L + LG S  ++ L  EL SRR A A         S+  P  +++
Sbjct:   22 ETKAWLLGELRKLFGFDEVEEMADYLL-AFPPDDAVSLQQFLVELLGASEAIETLVRELSSRRQADAATSAAPPPSSRAAPVRTNE 106
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10569.396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JFY4_9PHAE3.110e-1955.67zf-C2HC5 domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S2SAT0_9STRA9.620e-737.21Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10569contigS-dermatodea_contig10569:5469..7682 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionSecreted protein
Ec32 orthologEc-27_001060.2
Hectar predicted targeting categoryother localisation
Exons4
Model size575
Cds size480
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10569.396.1prot_S-dermatodea_contig10569.396.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10569 5469..6804 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924163.4124305-CDS-S-dermatodea_contig10569:5468..57891622924163.4124305-CDS-S-dermatodea_contig10569:5468..5789Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10569 5469..5789 -
1694079061.063746-CDS-S-dermatodea_contig10569:5468..57891694079061.063746-CDS-S-dermatodea_contig10569:5468..5789Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10569 5469..5789 -
1622924163.4220078-CDS-S-dermatodea_contig10569:6098..61941622924163.4220078-CDS-S-dermatodea_contig10569:6098..6194Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10569 6099..6194 -
1694079061.0727015-CDS-S-dermatodea_contig10569:6098..61941694079061.0727015-CDS-S-dermatodea_contig10569:6098..6194Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10569 6099..6194 -
1622924163.4375362-CDS-S-dermatodea_contig10569:6741..68041622924163.4375362-CDS-S-dermatodea_contig10569:6741..6804Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10569 6742..6804 -
1694079061.081251-CDS-S-dermatodea_contig10569:6741..68041694079061.081251-CDS-S-dermatodea_contig10569:6741..6804Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10569 6742..6804 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924163.4507363-UTR-S-dermatodea_contig10569:6804..68641622924163.4507363-UTR-S-dermatodea_contig10569:6804..6864Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10569 6805..6864 -
1694079061.0904222-UTR-S-dermatodea_contig10569:6804..68641694079061.0904222-UTR-S-dermatodea_contig10569:6804..6864Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10569 6805..6864 -
1622924163.4658632-UTR-S-dermatodea_contig10569:7648..76821622924163.4658632-UTR-S-dermatodea_contig10569:7648..7682Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10569 7649..7682 -
1694079061.1004303-UTR-S-dermatodea_contig10569:7648..76821694079061.1004303-UTR-S-dermatodea_contig10569:7648..7682Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10569 7649..7682 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10569.396.1

>prot_S-dermatodea_contig10569.396.1 ID=prot_S-dermatodea_contig10569.396.1|Name=mRNA_S-dermatodea_contig10569.396.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=160bp
MGDKVRAWFEGELRRMLGFDEVEEIARFALDSFSTSQPAELRQYLEQFLG
QSREVQKLCDELFSRRNAAATPGPVLGAGSKTKPTASDDFWGAGAGASSS
RAAGSARGGGGVGGRGQGQERQTGKGKAKGKVYQKAAAEDFWGGGTTSAR
STPAKSTPIP
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mRNA from alignment at S-dermatodea_contig10569:5469..7682-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10569.396.1 ID=mRNA_S-dermatodea_contig10569.396.1|Name=mRNA_S-dermatodea_contig10569.396.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2214bp|location=Sequence derived from alignment at S-dermatodea_contig10569:5469..7682- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGCAGCGCTGTGCGTGTAGTGAGGACGTCTGAGGTAAGTTGATTCCAGG
GGCCGCAGGGGTTGGCAGAAAGTGAGATAGAATGTGGCATGAAGGATCGC
ATGTTGGACCCGACAATAGCCATGCAGTTACTCCTAGAAATGCCGAGTGT
ACCTGACCTGCGAGCAGGAGCCGCCAGGCTTCCTCCGTGAGTTGCACCAG
CTCAATCCATACAAGCATCCGCATCACGCGAGAGCTGGGAGTGGGTACGG
TTTACCTGTTGCTGGTCTTGCTTGGCAGGCGAACGTGCTGACTGTGCTTG
GCATCCCATGTTATCGGCAAGAGGTATGTAAAGCGAACGAGTGTATTATG
CAAAGTTGTAGACCTTCGTGTGTGCAGAATTTTGGACCTATCTGTACTGT
TGTCTCCCTTGTCCGACTTAGAGGGCAGGGCAGCAGCGGGCGTTTGGGCA
CCTCCCTCCCTGCCTTGTTGGTTGCATTGTTTGTGACCTTGAGGTTGGAA
AAACAGCAGGGCGGGATCGCGCGTGGTCTCAGCGCAGACAACGCCATACT
ACAGTAACTGTCTTCGTCGCATAACTTTCGTTCGTCTGGCACGTGCTGCA
CTTGTAATGGCCATCTCCGCTTACATACATACAGCTATTAATAGCTGTAG
AGCTAAATCTCCCATCATATGGGTATCATATCATACAACCTCCACAACCT
TTGGCACACGGATAGCTTCTTCTCCGCGCAAAATATGTTGGCAGGGCGGA
CCTTACGCATACTCCAGGGGTGTGCACGCTCTTTCACCGTCGCCGCCTTC
CCATGCGCGCTCTCACAGGCCGGTTCTGCTAGGTCTCCGTTGCTGCCGTG
ACTCCCCGTCCCTCCTGCACCGCTGAAAATGGGAGACAAAGTTCGGGCGT
GGTTCGAAGGCGAGCTCCGGCGGATGCTTGGCTTCGACGAGGTGAACACT
GTCAAAAGGCAGCCACAAAGCTCGCAAGCTTGCAATGCAAATAGCTTACC
GTGCGTGCGGTGCCCGCCTATCCCATGATAGTGGAACACACACCAGATCC
GCCTCTGCATGTGCTGCCTGTACGAGCACCAAGCACCGGCAGTGTGTTCG
TGTTCGCACAAGCAAGGTGTTTCGAAACGCGGCCTTTTCTCTCTTTACAT
TTTGACTTTGGATCCATAATATAATAGCATGGTAACCCTCGACTTGTGAC
GAAGAAAACGATTGAGAGCACCGAAGCCATCTCGTTGTACAATCGATAAA
GTCCACCAATCAATCTAAACTGCAAGACCACTTGCGGGTTTTAACATTTA
CACGCACCGCTTATCAACGCTTCATATTTGTGCAGCGCGTGCTGTGGCCC
ACGGTGTATTTGGCTCTGTGCTTTATATGTTGGCTTGCGCGACGTTTGCC
GACGATTCTTCTCCAACGTGATGATCGCTTCCGCCCTCGCCTTCGCGGCG
CTTGTAATCCTGCCGTTTTTCTCCCCGACCTTTTACAGGTGGAAGAAATC
GCGAGGTTTGCGCTCGACAGCTTTTCCACGTCTCAGCCGGCTGAGCTCAG
GCAGTACCTGGAGCAGTTTCTCGGCCAGTCCAGGGTGGGCAGCGTGTTGT
TTGCGACTCGCAGTCGAGCATGCCACGTTCTCCGACAATCTTTACACCAT
GCCTCGTGAAATTGGGCGTCTCCGCTTGTGCTCACGCGAACCTCTGTTGA
ATGCTCCTTGTTCACCGTTCCGGTATCTTTGGCAGGAGAAACGCACATAA
AATACAGCAAAGCATGTCCCCCACCCCCGCTCTGCGCCCTTCCTCGCCGA
TGAACAGGCATCGATCCTACTATTTTTACGTAGGAGCACAACGTATTTTC
CCTTGCAAAATATTTGCTTCCGCCCAAAATACGCGCCCCCCAGGAAGTGC
AGAAGCTTTGCGACGAGCTCTTCTCTAGGCGAAACGCAGCAGCGACACCG
GGACCGGTGCTGGGAGCGGGGAGCAAAACGAAACCAACCGCAAGCGACGA
CTTCTGGGGAGCGGGAGCAGGCGCCAGCTCAAGCCGAGCAGCAGGGTCTG
CACGAGGAGGAGGCGGCGTTGGAGGAAGGGGGCAGGGGCAAGAGCGACAA
ACCGGCAAAGGAAAGGCGAAAGGCAAGGTGTACCAGAAGGCCGCCGCGGA
AGATTTTTGGGGCGGGGGCACCACCTCCGCCCGTTCGACGCCCGCAAAAT
CGACCCCGATCCCT
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Coding sequence (CDS) from alignment at S-dermatodea_contig10569:5469..7682-

>mRNA_S-dermatodea_contig10569.396.1 ID=mRNA_S-dermatodea_contig10569.396.1|Name=mRNA_S-dermatodea_contig10569.396.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=960bp|location=Sequence derived from alignment at S-dermatodea_contig10569:5469..7682- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGAGACAAAGTTCGGGCGTGGTTCGAAGGCGAGCTCCGGCGGATGCT
TGGCTTCGACGAGATGGGAGACAAAGTTCGGGCGTGGTTCGAAGGCGAGC
TCCGGCGGATGCTTGGCTTCGACGAGGTGGAAGAAATCGCGAGGTTTGCG
CTCGACAGCTTTTCCACGTCTCAGCCGGCTGAGCTCAGGCAGTACCTGGA
GCAGTTTCTCGGCCAGTCCAGGGTGGAAGAAATCGCGAGGTTTGCGCTCG
ACAGCTTTTCCACGTCTCAGCCGGCTGAGCTCAGGCAGTACCTGGAGCAG
TTTCTCGGCCAGTCCAGGGAAGTGCAGAAGCTTTGCGACGAGCTCTTCTC
TAGGCGAAACGCAGCAGCGACACCGGGACCGGTGCTGGGAGCGGGGAGCA
AAACGAAACCAACCGCAAGCGACGACTTCTGGGGAGCGGGAGCAGGCGCC
AGCTCAAGCCGAGCAGCAGGGTCTGCACGAGGAGGAGGCGGCGTTGGAGG
AAGGGGGCAGGGGCAAGAGCGACAAACCGGCAAAGGAAAGGCGAAAGGCA
AGGTGTACCAGAAGGCCGCCGCGGAAGATTTTTGGGGCGGGGGCACCACC
TCCGCCCGTTCGACGCCCGCAAAATCGACCCCGATCCCTGAAGTGCAGAA
GCTTTGCGACGAGCTCTTCTCTAGGCGAAACGCAGCAGCGACACCGGGAC
CGGTGCTGGGAGCGGGGAGCAAAACGAAACCAACCGCAAGCGACGACTTC
TGGGGAGCGGGAGCAGGCGCCAGCTCAAGCCGAGCAGCAGGGTCTGCACG
AGGAGGAGGCGGCGTTGGAGGAAGGGGGCAGGGGCAAGAGCGACAAACCG
GCAAAGGAAAGGCGAAAGGCAAGGTGTACCAGAAGGCCGCCGCGGAAGAT
TTTTGGGGCGGGGGCACCACCTCCGCCCGTTCGACGCCCGCAAAATCGAC
CCCGATCCCT
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