mRNA_S-dermatodea_contig10563.392.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10563.392.1
Unique NamemRNA_S-dermatodea_contig10563.392.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10563.392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10563contigS-dermatodea_contig10563:5560..6294 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size735
Cds size735
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924163.25725-CDS-S-dermatodea_contig10563:5559..62941622924163.25725-CDS-S-dermatodea_contig10563:5559..6294Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10563 5560..6294 -
1694079060.9730227-CDS-S-dermatodea_contig10563:5559..62941694079060.9730227-CDS-S-dermatodea_contig10563:5559..6294Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10563 5560..6294 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10563.392.1prot_S-dermatodea_contig10563.392.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10563 5560..6294 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10563.392.1

>prot_S-dermatodea_contig10563.392.1 ID=prot_S-dermatodea_contig10563.392.1|Name=mRNA_S-dermatodea_contig10563.392.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=245bp
MEGIFCLTAVAGKLGDLQAAARKFGCGWASHTSASKLTDVAAIGAHLEML
QWARGQGCPWNERTRSFAAYGGHLALLKWAWDNGCPWDRETCDCAAEGGH
LDVLQWVREKGCPWDQRTCKAAARSGNLAVLKWARPQGCPWDLRTCSGAA
YRGHLEVLKWARQQGCPWSYSTCRAAASGGHSEVLRCARENVCPWKECTC
MGAAQCGRLDILQWARAQGRPWDERTCRGATWGGNLELLKWSREQ
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mRNA from alignment at S-dermatodea_contig10563:5560..6294-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10563.392.1 ID=mRNA_S-dermatodea_contig10563.392.1|Name=mRNA_S-dermatodea_contig10563.392.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=735bp|location=Sequence derived from alignment at S-dermatodea_contig10563:5560..6294- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGGGGATATTTTGTCTCACGGCAGTGGCGGGAAAACTGGGAGACCT
CCAAGCAGCGGCTCGAAAATTCGGATGCGGATGGGCCTCTCACACAAGCG
CATCCAAGTTGACCGACGTTGCTGCCATCGGCGCGCACCTAGAGATGCTC
CAATGGGCGAGGGGGCAGGGCTGCCCCTGGAACGAGAGAACGCGCAGCTT
TGCGGCCTACGGGGGGCACCTGGCACTACTCAAGTGGGCTTGGGATAATG
GGTGCCCATGGGACCGGGAGACGTGCGACTGTGCGGCTGAGGGTGGACAC
TTAGACGTCCTCCAGTGGGTTAGGGAAAAGGGGTGCCCTTGGGATCAGAG
GACATGCAAGGCCGCAGCCCGGAGTGGAAATCTGGCGGTGCTCAAGTGGG
CTAGGCCGCAGGGGTGCCCGTGGGACCTGCGAACGTGCAGTGGAGCGGCC
TATCGTGGACACTTGGAAGTCCTCAAGTGGGCGAGGCAGCAGGGGTGCCC
GTGGTCGTACTCGACGTGCAGAGCTGCCGCCAGCGGCGGGCACTCTGAGG
TCCTCCGGTGCGCTAGGGAGAACGTGTGTCCGTGGAAGGAGTGCACATGC
ATGGGCGCGGCGCAGTGCGGGCGCTTGGACATCCTCCAGTGGGCAAGGGC
GCAGGGACGCCCGTGGGACGAGAGGACGTGCCGGGGAGCGACCTGGGGTG
GGAACCTGGAACTGCTCAAGTGGTCGAGAGAACAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10563:5560..6294-

>mRNA_S-dermatodea_contig10563.392.1 ID=mRNA_S-dermatodea_contig10563.392.1|Name=mRNA_S-dermatodea_contig10563.392.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1470bp|location=Sequence derived from alignment at S-dermatodea_contig10563:5560..6294- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGGGGATATTTTGTCTCACGGCAGTGGCGGGAAAACTGGGAGACCT
CCAAGCAGCGGCTCGAAAATTCGGATGCGGATGGGCCTCTCACACAAGCG
CATCCAAGTTGACCGACGTTGCTGCCATCGGCGCGCACCTAGAGATGCTC
CAATGGGCGAGGGGGCAGGGCTGCCCCTGGAACGAGAGAACGCGCAGCTT
TGCGGCCTACGGGGGGCACCTGGCACTACTCAAGTGGGCTTGGGATAATG
GGTGCCCATGGGACCGGGAGACGTGCGACTGTGCGGCTGAGGGTGGACAC
TTAGACGTCCTCCAGTGGGTTAGGGAAAAGGGGTGCCCTTGGGATCAGAG
GACATGCAAGGCCGCAGCCCGGAGTGGAAATCTGGCGGTGCTCAAGTGGG
CTAGGCCGCAGGGGTGCCCGTGGGACCTGCGAACGTGCAGTGGAGCGGCC
TATCGTGGACACTTGGAAGTCCTCAAGTGGGCGAGGCAGCAGGGGTGCCC
GTGGTCGTACTCGACGTGCAGAGCTGCCGCCAGCGGCGGGCACTCTGAGG
TCCTCCGGTGCGCTAGGGAGAACGTGTGTCCGTGGAAGGAGTGCACATGC
ATGGGCGCGGCGCAGTGCGGGCGCTTGGACATCCTCCAGTGGGCAAGGGC
GCAGGGACGCCCGTGGGACGAGAGGACGTGCCGGGGAGCGACCTGGGGTG
GGAACCTGGAACTGCTCAAGTGGTCGAGAGAACAGATGGAGGGGATATTT
TGTCTCACGGCAGTGGCGGGAAAACTGGGAGACCTCCAAGCAGCGGCTCG
AAAATTCGGATGCGGATGGGCCTCTCACACAAGCGCATCCAAGTTGACCG
ACGTTGCTGCCATCGGCGCGCACCTAGAGATGCTCCAATGGGCGAGGGGG
CAGGGCTGCCCCTGGAACGAGAGAACGCGCAGCTTTGCGGCCTACGGGGG
GCACCTGGCACTACTCAAGTGGGCTTGGGATAATGGGTGCCCATGGGACC
GGGAGACGTGCGACTGTGCGGCTGAGGGTGGACACTTAGACGTCCTCCAG
TGGGTTAGGGAAAAGGGGTGCCCTTGGGATCAGAGGACATGCAAGGCCGC
AGCCCGGAGTGGAAATCTGGCGGTGCTCAAGTGGGCTAGGCCGCAGGGGT
GCCCGTGGGACCTGCGAACGTGCAGTGGAGCGGCCTATCGTGGACACTTG
GAAGTCCTCAAGTGGGCGAGGCAGCAGGGGTGCCCGTGGTCGTACTCGAC
GTGCAGAGCTGCCGCCAGCGGCGGGCACTCTGAGGTCCTCCGGTGCGCTA
GGGAGAACGTGTGTCCGTGGAAGGAGTGCACATGCATGGGCGCGGCGCAG
TGCGGGCGCTTGGACATCCTCCAGTGGGCAAGGGCGCAGGGACGCCCGTG
GGACGAGAGGACGTGCCGGGGAGCGACCTGGGGTGGGAACCTGGAACTGC
TCAAGTGGTCGAGAGAACAG
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