mRNA_S-dermatodea_contig10560.391.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10560.391.1
Unique NamemRNA_S-dermatodea_contig10560.391.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10560.391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10560contigS-dermatodea_contig10560:585..3436 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size264
Cds size261
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10560.391.1prot_S-dermatodea_contig10560.391.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10560 585..3435 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924163.2090087-CDS-S-dermatodea_contig10560:584..6661622924163.2090087-CDS-S-dermatodea_contig10560:584..666Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10560 585..666 +
1694079060.9351678-CDS-S-dermatodea_contig10560:584..6661694079060.9351678-CDS-S-dermatodea_contig10560:584..666Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10560 585..666 +
1622924163.2179348-CDS-S-dermatodea_contig10560:2698..28121622924163.2179348-CDS-S-dermatodea_contig10560:2698..2812Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10560 2699..2812 +
1694079060.948047-CDS-S-dermatodea_contig10560:2698..28121694079060.948047-CDS-S-dermatodea_contig10560:2698..2812Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10560 2699..2812 +
1622924163.227342-CDS-S-dermatodea_contig10560:3370..34351622924163.227342-CDS-S-dermatodea_contig10560:3370..3435Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10560 3371..3435 +
1694079060.9642415-CDS-S-dermatodea_contig10560:3370..34351694079060.9642415-CDS-S-dermatodea_contig10560:3370..3435Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10560 3371..3435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10560.391.1

>prot_S-dermatodea_contig10560.391.1 ID=prot_S-dermatodea_contig10560.391.1|Name=mRNA_S-dermatodea_contig10560.391.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=87bp
RRHSASDFVVEYPAIDEAADAEAPLLAGWTMRKMKTGQVYYENDVDKRKS
WTKPVAPSQPSGSATRTKHRSTVSNPAPALPARGAPP
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mRNA from alignment at S-dermatodea_contig10560:585..3436+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10560.391.1 ID=mRNA_S-dermatodea_contig10560.391.1|Name=mRNA_S-dermatodea_contig10560.391.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2852bp|location=Sequence derived from alignment at S-dermatodea_contig10560:585..3436+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGTCGGCACTCGGCGAGCGACTTTGTGGTGGAGTACCCTGCTATCGATGA
AGCTGCTGACGCGGAAGCCCCGCTCCTTGCCGGTGAGGACCTCTTTTTTC
CTCCTTTTCGCGTGAGACCTGCTATCACTGCGATTGCGATTACAGTACAC
ATGCATGTATTTTCACGTGACCTGCGATGGCGATTGCACATGTCTTTGCA
TGCACACGTGACCTGCGATTGCGATTGCACATATGCATGTATTTTCACGT
GACCTGCGATGGCGATTGCACGCATAACTATTTTCACACGTGACCTGCGA
TTGCGATTACACATATGTATGTCTTTCACGTAACCTGCGATTGCGATTAC
ACGCATAAGTCTTTTCACACGTGACCTGCTGTTGCGATTGCGAATACACG
CACATGTATTTTCGCGTGGCCTGCGATTGCGATTACACAACCATGTACTT
TCACGTGACCTGCGATTGCGATTGCAAACACATACATACATGTCTTTTCA
CACGCACGCGGCAAGCGCCAAAACCGATTCGCGGTACTTGTAAATTTTTA
GGGTAGTATAATATTAATAGTATCATAGTGTGCGATTTTTACATCTTGCC
AACCGGTTGGCGGTTCGTGGTTGGTAGTGTGGCGTGTTTGGTCGGCGCTG
GTAAGGTAGGGTAGGGTAGTGGTAGGGTAGGGTAGGGTAGTGCCCGTCGC
AACCGGCCATGTGAAAAGCCATGATTTTTTCCCTCCGGTAGTTTTTTTGC
GGAGTGGTGTTGTTGGGGTGCTGTGGAAGTCCAGGGGGACGACGTGGGCG
TGGAAAGAGGCTCAACGTATGCTGTCCCCCCAGCGACGGTAGGGTTTTGA
AGTTTGTTTGGGTTTTCTATGTGATTTATGTTGGCGTTCTCTCGGTGTTG
TTGGTCCGTGTTGGGTTGTTCGGCAGACGCGCGCGTCTCGCTGTTTTTTT
TTCTGTTTTTTTTTTTTACCGCACGAGCGTTGTTTTTTTGTTTTTTGTTT
CTCTTCGTCGGCAACGCACTCCCGGGCGACTCTGGCTCTGCCGTCTTCCT
GCGTTCGCCGGCTGTCCTGTGGGATTGATTTGATTGCCTTTGGTTTCCGC
TCGCTCGCGTGTCTGGTGCTGGCGCTGGCGCTTGCGCGCGTCGAGCAGGT
GCCCGTACTGCTCGACGCGCAACCCCCCGTGCCCCCGGAAGGCCTCTTGC
ATCGCGGCAGTAGAGCCTGTGCGGATGATATGAAGGCACGAAACGTTAAG
TTGTTGGATTTAGGGTTGAAAATGGACCGAACGTTTTTTGTTGCAGGGTT
TTCAAATTGTCCGGGCGCGACCACCCCGTTAAACCTTAAACCGAAACACC
CTTTCAATTCAAAGACATGTCGTGTTGGGTTAACACGCCATACATGCTTA
CAGGCACTGTTTTGAGCGGAGAAGTGGTCCTGATTACTATTTTACTACTA
CTACTGTTTTTTTTTTTGTTTTTTGTTTTTTTTTGCAAACGTATACCCGA
TCGGCTTAATCCGACCCGACTTGTGGTCAGACACGCAAAGCGTCAGAGAG
TCTGTGTACCTCCCTAATAGCGGTCAGCCACGGCTACGCCCGTGAGGTCT
CCGTCGGAGCGGGGCGCACGGACGGACGAGCGGGGTGCGCGGTGGGGTGC
CGCGTGGTGTGGCTGTGGGCGAACGGGCGAACCGGCGAACTGTCCGAAAA
GGCTTCAAAAGACTACTCTGTAAGCCCTATCGATTTGGCTTCAAGATCTC
CACTCTAAGGCCTTATCGATTTGGCATCAAGAGCCAACTCTAAATCGCTC
TTTTTATTCGACAGCGTTCACAGCGCTATTACATTAATACGTACTATTAA
TAGTTGCAAGCCACGGACGGCTGTCGCCCGTGAGGTGTGCGTTGGCAGGA
CGATGTGCGGGTTGGGTTTGGAGGATACGGTGTGGCGACCCACGGCAGGC
GTAGCGAAAGCCGTATACAAGTATCTGTATAGGATTTATACACAATCGGG
CTTCAGTTGAAACAACTTGAAAATGGGAGTCTATAAATCGCTATGAATAA
GATTGTTCACCCTTGTATTAATTAGTAAGAATGCGTGTATATATATGTTT
ATTGCGTTTTTCAGGGTGGACCATGCGCAAGATGAAGACGGGGCAGGTTT
ACTACGAAAACGACGTCGATAAGCGCAAGAGCTGGACCAAGCCTGTTGCC
CCTTCGCAGCCGTCGGGCAGCGCCACACGTGAGGAAAATGCGACCCTCGC
GTTGTTACCGTTACCGTTACCGCCTGGCCTCGTAAAGAGACTTGTTTGAT
TGATTACTTGATTGTTTGATTGATTGATTTATTGATTGATTGATTGACTT
GATGGATGATTTACACACGTATAGCCGATCGGCTTAATCCGACCCGACGT
GTGGTCAGATGCTATAGCAAAAGAGTCAAGGAGAAAATTACTGTTAATAA
TCAGAACTCTCCTTATATACTACTCAATACCGTCCCTCTGGTACTCACAT
GGTGTAAACGTGTTTTAGTTGTAGCTCGTTGGAACACAAACTTGGCTTGG
TTTGTTCTCGCTGCCTTTTTTTCTTTCTTTTCCCAGTGTCCCTCCCCCCC
CCCCAATCAATTGCCTCTCTCTATCTACTGTATTACAGTAGTTTTTTTTT
TCTGCTGCACCTTAATGGCGTTATATCTAGATGTTTTTAAAGGCAGCCTC
GATTACCTCGTTGTCCACACTCCATTTCGACAAAATCACGCTCAAAATCG
GTTTAACATCTCCCATCTCCCGCCTGCACATACCAGGTACCAAGCACCGC
AGCACGGTGTCAAACCCTGCCCCAGCCCTCCCTGCTCGAGGCGCACCCCC
AC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10560:585..3436+

>mRNA_S-dermatodea_contig10560.391.1 ID=mRNA_S-dermatodea_contig10560.391.1|Name=mRNA_S-dermatodea_contig10560.391.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at S-dermatodea_contig10560:585..3436+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGTCGGCACTCGGCGAGCGACTTTGTGGTGGAGTACCCTGCTATCGATGA
AGCTGCTGACGCGGAAGCCCCGCTCCTTGCCGCGTCGGCACTCGGCGAGC
GACTTTGTGGTGGAGTACCCTGCTATCGATGAAGCTGCTGACGCGGAAGC
CCCGCTCCTTGCCGGGTGGACCATGCGCAAGATGAAGACGGGGCAGGTTT
ACTACGAAAACGACGTCGATAAGCGCAAGAGCTGGACCAAGCCTGTTGCC
CCTTCGCAGCCGTCGGGCAGCGCCACACGGTGGACCATGCGCAAGATGAA
GACGGGGCAGGTTTACTACGAAAACGACGTCGATAAGCGCAAGAGCTGGA
CCAAGCCTGTTGCCCCTTCGCAGCCGTCGGGCAGCGCCACACGTACCAAG
CACCGCAGCACGGTGTCAAACCCTGCCCCAGCCCTCCCTGCTCGAGGCGC
ACCCCCAGTACCAAGCACCGCAGCACGGTGTCAAACCCTGCCCCAGCCCT
CCCTGCTCGAGGCGCACCCCCA
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