mRNA_S-dermatodea_contig1055.385.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig1055.385.1 vs. uniprot
Match: A0A6H5JGV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGV5_9PHAE) HSP 1 Score: 457 bits (1177), Expect = 5.910e-147 Identity = 277/587 (47.19%), Postives = 356/587 (60.65%), Query Frame = 1
Query: 16 FRQVVPLPWLAVACFSAVDLASNAYVVETEDFRRLMQRCNFHITAAEVGDAADLESLYDLTDWVYESIDAAGPTALPKLLDADVIGIALRGAGSPDPDISTLCHEMLNVLSSNEHVAAMMAKDPSVRAVLVDEVRRQLSGWKTTASGEDND-TAEEDLDYGSDGDSEAREVDGAAREDPPGTIVLDPFYAALTLRTLNNVMRASR-----------------AGTKTPESSTDLFSSTIISDSERRLKIPWPVRLLYGGNDY----------GEAESD----GAAGEVS-EWPLELKLVGDIAELMLSV-SVRGDQG----GELDEVGQMDARHALQGLEAAAASVLRETSSHPQLVDLLMRRRPLFALVTLSWKGQSVKAEDWAAEATLNVCAAYRRLYSVPEPVDKMASHNVVSVLTSWSKRLLAEEKAGIEAVELGPGHEDRAFVLQAR--AIPPLALSDPLLTITASAVVGLS-GIAWGTIRRWVAWRRAGETFAAISRFALPRALLWAGLRAGLGATALTATHGPFGFRSQMRYRTLDATSGNRGTLTMSGVRELADLGYLYLILRLCPYSLLPAFVLNSML 1653
FR +PLPWLA+ F AV+ AY VE E L+QRCNFHI A +G+A +L SL +L D V+ S+ A GPTALPKLLDA VIGIALRGA SP+ ++ +C+ +L VLS N HVA M++DP++RAVL+ E+RRQ+ GW SG D+D AE + G ++ E AA PP TIV+DP + LTL TL+NVMRASR AG + + + + ++PWP R LYG N+Y G + D G +S WPL+ KLV DIAELMLS S R +G GE E+G++ LEAAAAS L E S HP+LV LL+RRRPL LV +S S+ A ++EATLN+C AYRR + +PE + AS+ + +W + LA+E A + +L D+AFV QA +PPL S L+ SA VG++ G WG RRW+AWRRAGETF+ +S +LP LL AGLRAGLGATAL ATHGP GFR Q LDATSG+RGTL MS REL++L YLY ILRLCPYSLLP+ V+++++
Sbjct: 96 FRDQIPLPWLALGLFQAVEFGLAAYEVEAEKVDELVQRCNFHIATATIGEAVNLTSLLELLDLVHHSVLAVGPTALPKLLDAGVIGIALRGAESPNTHVAVVCYRILTVLSQNRHVARRMSRDPAIRAVLIGELRRQVKGWNHAGSGADDDHEAEGEKQQRMGGLADGGEGATAAARPPPATIVVDPIHLTLTLETLSNVMRASRRDINSSKRRSTAEEPGAAGLNRRFGAGGVSGGRTAAGEDEEDEVPWPFRFLYGENNYEGAAGYAYGGGNEDDDTIIASVGGGISGPWPLDRKLVADIAELMLSAASARDSEGAVARGEDAELGEV--------LEAAAASSLLEISHHPELVGLLLRRRPLAGLVAVSQ--DSMMAAQTSSEATLNICNAYRRCHGLPEASEPKASYEEI---ITWVNKTLAQEWAESPSGDLDTSEADQAFVRQAERSTLPPLPYSSVLINEIMSAGVGMALGFPWGAARRWIAWRRAGETFSVLSTCSLPWVLLRAGLRAGLGATALVATHGPAGFRPQASSWILDATSGSRGTLAMSAARELSELAYLYAILRLCPYSLLPSLVVSAVV 669
BLAST of mRNA_S-dermatodea_contig1055.385.1 vs. uniprot
Match: D7G608_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G608_ECTSI) HSP 1 Score: 344 bits (882), Expect = 4.490e-106 Identity = 223/482 (46.27%), Postives = 288/482 (59.75%), Query Frame = 1
Query: 373 MAKDPSVRAVLVDEVRRQLSGWKTTASGEDND-TAEEDLDYGSDGDSEAREVDGAAREDPPGTIVLDPFYAALTLRTLNNVMRASR---------AGTKTPESS---------TDLFSSTIISDSERRLKIPWPVRLLYGGNDY----GEAESDG----------AAGEVS-EWPLELKLVGDIAELMLSV-SVRGDQG----GELDEVGQMDARHALQGLEAAAASVLRETSSHPQLVDLLMRRRPLFALVTLSWKGQSVKAEDWAAEATLNVCAAYRRLYSVPEPVDKMASHNVVSVLTSWSKRLLAEEKAGIEAVELGPGHEDRAFVLQAR--AIPPLALSDPLLTITASAVVGLS-GIAWGTIRRWVAWRRAGETFAAISRFALPRALLWAGLRAGLGATALTATHGPFGFRSQMRYRTLDATSGNRGTLTMSGVRELADLGYLYLILRLCPYSLLPAFVLNSMLKGGPVAG---DAW 1683
M++DP +RAVLV E+RRQ+ GW SG D+D AE + DG ++ E AA PP TIV+DP + LTL TL+NVMRASR + + PE++ T ++ + ++PWP R LYG N+Y G A G G VS WPL+ KLV DIAELMLS S R +G GE E+G++ LEAAAAS LRE S H +LV LL+RRRPL LV +S S+ A ++EATLN+C AYRR + +PE + AS++ V +W + LA+E AG + +L D+AFV QA +PP S L+ + S VG++ G+ WG RRW+AWRRAGETF+A+SR +LPRALL AGLRAGLG TAL ATHGP GFR Q R LDATSG+RGTL MS RE+++L YLY ILRLCPYSLLP+ V+++++ G G D W
Sbjct: 1 MSRDPVIRAVLVGELRRQVKGWNHAGSGADDDHEAEGEKQQRRDGLADGGEGATAAARPPPATIVVDPIHLTLTLETLSNVMRASRRDINSSRRRSTAEEPEAAGLNWRFGAGVGSGGRTAVAGEDEEDEVPWPFRFLYGENNYEGAAGYAHDGGNEDDDTITPSVGGVVSGPWPLDRKLVADIAELMLSAASARDSEGAVARGEDAELGEV--------LEAAAASSLREISHHSELVGLLLRRRPLVGLVAVSQ--DSMMAAQASSEATLNICNAYRRCHGLPEASEPKASYDEV---ITWVNKTLAQEWAGSPSGDLDTSEADQAFVRQAERSTLPPSPYSSVLINMQMSTGVGMALGVPWGAARRWIAWRRAGETFSALSRLSLPRALLLAGLRAGLGTTALVATHGPAGFRPQARPWILDATSGSRGTLAMSAAREVSELAYLYAILRLCPYSLLPSLVVSAVVWNGHRYGGVVDDW 469
BLAST of mRNA_S-dermatodea_contig1055.385.1 vs. uniprot
Match: D7G609_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G609_ECTSI) HSP 1 Score: 122 bits (305), Expect = 1.560e-27 Identity = 62/103 (60.19%), Postives = 72/103 (69.90%), Query Frame = 1
Query: 16 FRQVVPLPWLAVACFSAVDLASNAYVVETEDFRRLMQRCNFHITAAEVGDAADLESLYDLTDWVYESIDAAGPTALPKLLDADVIGIALRGAGSPDPDISTLC 324
FR VPLPWLA+ F AV+ AY VETE L+QRCNFHI A VG+A +L SL +L D V+ S+ A GPTALPKLLDA VIGIALRGA SP+ +S C
Sbjct: 131 FRDQVPLPWLALVLFQAVEFGLAAYEVETEKLDELVQRCNFHIATATVGEAVNLTSLQELLDLVHHSVLAVGPTALPKLLDAGVIGIALRGAESPNTHVSKGC 233 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1055.385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1055.385.1 >prot_S-dermatodea_contig1055.385.1 ID=prot_S-dermatodea_contig1055.385.1|Name=mRNA_S-dermatodea_contig1055.385.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=524bp MQRCNFHITAAEVGDAADLESLYDLTDWVYESIDAAGPTALPKLLDADVIback to top mRNA from alignment at S-dermatodea_contig1055:11642..17135+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig1055.385.1 ID=mRNA_S-dermatodea_contig1055.385.1|Name=mRNA_S-dermatodea_contig1055.385.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5494bp|location=Sequence derived from alignment at S-dermatodea_contig1055:11642..17135+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig1055:11642..17135+ >mRNA_S-dermatodea_contig1055.385.1 ID=mRNA_S-dermatodea_contig1055.385.1|Name=mRNA_S-dermatodea_contig1055.385.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3144bp|location=Sequence derived from alignment at S-dermatodea_contig1055:11642..17135+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |