mRNA_S-dermatodea_contig10546.384.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10546.384.1
Unique NamemRNA_S-dermatodea_contig10546.384.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10546.384.1 vs. uniprot
Match: D7FXY4_ECTSI (Repressor of RNA polymerase III transcription n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXY4_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 7.490e-53
Identity = 85/92 (92.39%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:   16 AHYGTSPSFGVITDVGVRRTLVDLICTMNASFPDYDFSGVRPDNFQKEASVSLVRNKVNAALAEISVIHNKIFLESFWADLDEVMKLKDCEV 291
            A +GTSPSFGV+TDVGVRRTLVDLICTMNASFPDYDFSGVRPD+F KEASVSLVRNKVNAALAE+SVIHNKIFLESFWADLDEVM LKDCEV
Sbjct:   99 AAFGTSPSFGVLTDVGVRRTLVDLICTMNASFPDYDFSGVRPDSFDKEASVSLVRNKVNAALAEVSVIHNKIFLESFWADLDEVMTLKDCEV 190
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BLAST of mRNA_S-dermatodea_contig10546.384.1 vs. uniprot
Match: A0A7S2B0Q0_9STRA (Repressor of RNA polymerase III transcription n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B0Q0_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.130e-27
Identity = 52/97 (53.61%), Postives = 69/97 (71.13%), Query Frame = 1 
Query:    1 MSASPAHYGTSPSFGVITDVGVRRTLVDLICTMNASFPDYDFSGVRPDNFQKEASVSLVRNKVNAALAEISVIHNKIFLESFWADLDEVMKLKDCEV 291
            ++ SP   G+SP  G ++D G RR L+DLI TMNASFPD+DFS VRP+ F KE  VSLV + +N  LAE+S  +N  FLE  W  ++EV+KLK+CE+
Sbjct:   56 LACSPTALGSSP-LGPLSDSGTRRLLIDLISTMNASFPDHDFSSVRPEQFLKEQHVSLVMSNINMHLAELSETYNSSFLEELWMSIEEVVKLKECEI 151
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BLAST of mRNA_S-dermatodea_contig10546.384.1 vs. uniprot
Match: A0A1V9Z7M1_9STRA (Repressor of RNA polymerase III transcription n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z7M1_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.290e-18
Identity = 39/89 (43.82%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:   31 SPSFGVITDVGVRRTLVDLICTMNASFPDYDFSGVRPDNFQKEASVSLVRNKVNAALAEISVIHNKIFLESFWADLDEVMKLKDCEVKT 297
            S S G + D   R+ L++LI TMNASFPDYDFS ++P+ F+KE  + +V N +N  LAEI  + +  FLE  W  +   ++ +DCE+ T
Sbjct:   59 SGSIGSLADANTRKLLINLISTMNASFPDYDFSDLKPEQFKKEIDLRIVVNSINTQLAEIVEMDDLSFLEKLWESIFAAIQPRDCEIYT 147
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BLAST of mRNA_S-dermatodea_contig10546.384.1 vs. uniprot
Match: A0A1V9Z321_9STRA (Repressor of RNA polymerase III transcription n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z321_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.660e-18
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 1 
Query:   37 SFGVITDVGVRRTLVDLICTMNASFPDYDFSGVRPDNFQKEASVSLVRNKVNAALAEISVIHNKIFLESFWADLDEVMKLKDCEV 291
            S G + D   R+ L++LI TMNASFPDYDFS ++P+ F KE  + LV N VNA LAEI  + +  FLE  W  +   +  KDCE+
Sbjct:   62 SIGSLADSNTRKLLINLISTMNASFPDYDFSDLKPEQFHKEVDLRLVVNGVNAQLAEIVEMDDMGFLEKLWESVFAAIAPKDCEI 146
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BLAST of mRNA_S-dermatodea_contig10546.384.1 vs. uniprot
Match: A0A024TW87_9STRA (Repressor of RNA polymerase III transcription n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024TW87_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.750e-18
Identity = 41/97 (42.27%), Postives = 56/97 (57.73%), Query Frame = 1 
Query:    1 MSASPAHYGTSPSFGVITDVGVRRTLVDLICTMNASFPDYDFSGVRPDNFQKEASVSLVRNKVNAALAEISVIHNKIFLESFWADLDEVMKLKDCEV 291
              A+PA    + S G + D   R+ L++LI TMNASFPDYDFS ++P+ F KE  +  + N +N  LAEI  + N  FLE  W  +   +   DCEV
Sbjct:   65 QQATPATVHNNVSIGTLADSNTRKLLINLISTMNASFPDYDFSDLKPEQFHKEVDMRTIVNAINTQLAEIVEMDNIGFLEKLWESIVAAIAPGDCEV 161
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BLAST of mRNA_S-dermatodea_contig10546.384.1 vs. uniprot
Match: F0YN32_AURAN (Repressor of RNA polymerase III transcription n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YN32_AURAN)

HSP 1 Score: 85.1 bits (209), Expect = 3.950e-18
Identity = 43/97 (44.33%), Postives = 59/97 (60.82%), Query Frame = 1 
Query:    1 MSASPAHYGTSPSFGVITDVGVRRTLVDLICTMNASFPDYDFSGVRPDNFQKEASVSLVRNKVNAALAEISVIHNKIFLESFWADLDEVMKLKDCEV 291
            +++SP    T+   GV++    RR L+DLI TMNASFPD+DFS +RP+ F +EAS   V       L+EIS       L+  WA ++E + LKDCEV
Sbjct:   56 LTSSPGSLDTTSPLGVLSASSTRRLLIDLISTMNASFPDHDFSALRPEQFCREASADFVARSCTRYLSEISD-QGFDLLQELWAAVEEAVSLKDCEV 151
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BLAST of mRNA_S-dermatodea_contig10546.384.1 vs. uniprot
Match: A0A6G0XTH3_9STRA (Repressor of RNA polymerase III transcription n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XTH3_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 4.150e-18
Identity = 39/93 (41.94%), Postives = 57/93 (61.29%), Query Frame = 1 
Query:   13 PAHYGTSPSFGVITDVGVRRTLVDLICTMNASFPDYDFSGVRPDNFQKEASVSLVRNKVNAALAEISVIHNKIFLESFWADLDEVMKLKDCEV 291
            P    ++ S G + D   R+ L++LI TMNASFPDYDFS ++P+ F KE  + ++ N +N  LAEI  + N  FLE  W  + E ++  +CEV
Sbjct:   68 PTTEQSNVSIGTLADSNTRKLLINLISTMNASFPDYDFSDLKPERFHKEPDMRMIVNAINTQLAEIVEMDNMGFLEKLWESIVEAIQPSECEV 160
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BLAST of mRNA_S-dermatodea_contig10546.384.1 vs. uniprot
Match: A0A067C5G7_SAPPC (Repressor of RNA polymerase III transcription n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C5G7_SAPPC)

HSP 1 Score: 84.7 bits (208), Expect = 5.650e-18
Identity = 41/89 (46.07%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:   25 GTSPSFGVITDVGVRRTLVDLICTMNASFPDYDFSGVRPDNFQKEASVSLVRNKVNAALAEISVIHNKIFLESFWADLDEVMKLKDCEV 291
            G +P  G + D   R+ L++LI TMNASFPDYDFS ++P+ FQKE  + LV N VNA LAEI  + +  FLE  W  +   +  ++CE+
Sbjct:   59 GANP-LGSLADANTRKLLINLISTMNASFPDYDFSDLKPEQFQKEVDLRLVVNGVNAQLAEIVEMDDMGFLEKLWESIFGAISPRECEI 146
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BLAST of mRNA_S-dermatodea_contig10546.384.1 vs. uniprot
Match: A0A3L6VGD3_9STRA (Repressor of RNA polymerase III transcription n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VGD3_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.070e-17
Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = 1 
Query:   37 SFGVITDVGVRRTLVDLICTMNASFPDYDFSGVRPDNFQKEASVSLVRNKVNAALAEISVIHNKIFLESFWADLDEVMKLKDCEVKT 297
            S G + D   R+ L++LI TMNASFPDYDFS ++P+ F KE  + +V N +N  LAEI  + N  FLE  W  +   +   DCEV T
Sbjct:   84 SIGNLADSNTRKLLINLISTMNASFPDYDFSDLKPEQFHKEVDMRMVVNAINTQLAEIVEMDNVGFLEKLWESIVAAIAPTDCEVYT 170
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BLAST of mRNA_S-dermatodea_contig10546.384.1 vs. uniprot
Match: A0A485LDY7_9STRA (Repressor of RNA polymerase III transcription n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LDY7_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 8.600e-17
Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:   37 SFGVITDVGVRRTLVDLICTMNASFPDYDFSGVRPDNFQKEASVSLVRNKVNAALAEISVIHNKIFLESFWADLDEVMKLKDCEV 291
            S G + D   R+ L++LI TMNASFPDYDFS ++P+ F KE  +  V N +N  LAEI  + N  FLE  W  +   ++  DCEV
Sbjct:   98 SIGNLADSNTRKLLINLISTMNASFPDYDFSDLKPEQFHKEVEMRSVVNSINTQLAEIVEMDNMGFLEKLWESIVAAIQPADCEV 182
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10546.384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXY4_ECTSI7.490e-5392.39Repressor of RNA polymerase III transcription n=2 ... [more]
A0A7S2B0Q0_9STRA1.130e-2753.61Repressor of RNA polymerase III transcription n=1 ... [more]
A0A1V9Z7M1_9STRA1.290e-1843.82Repressor of RNA polymerase III transcription n=1 ... [more]
A0A1V9Z321_9STRA3.660e-1848.24Repressor of RNA polymerase III transcription n=1 ... [more]
A0A024TW87_9STRA3.750e-1842.27Repressor of RNA polymerase III transcription n=5 ... [more]
F0YN32_AURAN3.950e-1844.33Repressor of RNA polymerase III transcription n=1 ... [more]
A0A6G0XTH3_9STRA4.150e-1841.94Repressor of RNA polymerase III transcription n=1 ... [more]
A0A067C5G7_SAPPC5.650e-1846.07Repressor of RNA polymerase III transcription n=2 ... [more]
A0A3L6VGD3_9STRA1.070e-1745.98Repressor of RNA polymerase III transcription n=5 ... [more]
A0A485LDY7_9STRA8.600e-1745.88Repressor of RNA polymerase III transcription n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10546contigS-dermatodea_contig10546:277..1143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score175.6
Seed ortholog evalue1.2e-41
Seed eggNOG ortholog2880.D7FXY4
Preferred nameMAF1
KEGG koko:K12394
KEGG Pathwayko04142,map04142
GOsGO:0000122,GO:0000182,GO:0000994,GO:0001016,GO:0001030,GO:0001031,GO:0001032,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005886,GO:0006325,GO:0006342,GO:0006355,GO:0006357,GO:0006359,GO:0006996,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016020,GO:0016043,GO:0016458,GO:0016480,GO:0019219,GO:0019222,GO:0019899,GO:0030424,GO:0030425,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0036477,GO:0040029,GO:0042995,GO:0043005,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044212,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0045202,GO:0045814,GO:0045892,GO:0045934,GO:0048471,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050811,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060077,GO:0060255,GO:0061587,GO:0065007,GO:0070013,GO:0070063,GO:0071840,GO:0071944,GO:0080084,GO:0080090,GO:0097159,GO:0097447,GO:0097458,GO:0120025,GO:0120038,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.RNA polymerase III core binding
EggNOG OGsCOG5046@1,KOG3104@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRepressor of RNA polymerase III transcription Maf1
Ec32 orthologEc-19_002040.1
Exons2
Model size312
Cds size312
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924162.634818-CDS-S-dermatodea_contig10546:276..4621622924162.634818-CDS-S-dermatodea_contig10546:276..462Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10546 277..462 +
1694079060.54701-CDS-S-dermatodea_contig10546:276..4621694079060.54701-CDS-S-dermatodea_contig10546:276..462Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10546 277..462 +
1622924162.643703-CDS-S-dermatodea_contig10546:1017..11431622924162.643703-CDS-S-dermatodea_contig10546:1017..1143Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10546 1018..1143 +
1694079060.5656931-CDS-S-dermatodea_contig10546:1017..11431694079060.5656931-CDS-S-dermatodea_contig10546:1017..1143Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10546 1018..1143 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10546.384.1prot_S-dermatodea_contig10546.384.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10546 277..1143 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10546.384.1

>prot_S-dermatodea_contig10546.384.1 ID=prot_S-dermatodea_contig10546.384.1|Name=mRNA_S-dermatodea_contig10546.384.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=104bp
MSASPAHYGTSPSFGVITDVGVRRTLVDLICTMNASFPDYDFSGVRPDNF
QKEASVSLVRNKVNAALAEISVIHNKIFLESFWADLDEVMKLKDCEVKTT
RFE*
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mRNA from alignment at S-dermatodea_contig10546:277..1143+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10546.384.1 ID=mRNA_S-dermatodea_contig10546.384.1|Name=mRNA_S-dermatodea_contig10546.384.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=867bp|location=Sequence derived from alignment at S-dermatodea_contig10546:277..1143+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCGGCATCGCCCGCCCACTACGGCACCTCGCCCAGCTTCGGCGTTAT
CACAGACGTCGGCGTCAGGCGAACCTTGGTGGACCTGATCTGCACCATGA
ACGCCTCCTTCCCGGACTACGACTTCAGCGGTGTGCGCCCCGACAACTTC
CAGAAGGAGGCTAGCGTCAGCCTCGTGCGAAATAAGGTACTGTATCATAC
TGGCAGTTGTAGGTCGGTCGGTTGCGCGGTCGGTACGTGTTTGGGTTGGT
TGATTCGATTTAATTATAGAGTTGATTTTTCCGCAGAGAATAATGGCGAT
TGAGAGTTGACCGGTGAAACATCTGAAATTGAAGCCAAGAGTCATATTAT
AGTGATTTAAGACGGGGGGGCTTGTAAATGAGTGTTGAAAATAGCAGGAC
TTTTCACCTGACGGGCGTAGTAGCCGTGGCTACCTACTTTTAATATAATA
GTATCGTATCAAGCCGCGGAAAGCTTTTGAGTAAGCCAAAAATCCGAGAA
ATCCGCGAGCTGTGGGAGAGCCGAAGCCAAAGCGCGATACACTCAAAGGT
GATAACATACCGGGGATAAGAGAGATGGGGTGATCCCTTGTGACCACAGA
CATCCGGACCTCGGAAAAGCAAGTGTTTCATATGTGTGCGAAAAAAAAGA
AAACAAGGATTGGCGATGCCGTTTCGCGCATATTTGATCGTTTTGTGTCT
GAAAAACAAAGGAAAAAAATGTGTGTGTGTGTGTGTGCTAGGTTAACGCA
GCATTGGCGGAGATCTCGGTGATCCACAACAAGATCTTCCTGGAGAGCTT
CTGGGCCGACCTGGACGAGGTGATGAAGCTGAAGGACTGCGAGGTAAAAA
CAACTAGATTTGAATGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10546:277..1143+

>mRNA_S-dermatodea_contig10546.384.1 ID=mRNA_S-dermatodea_contig10546.384.1|Name=mRNA_S-dermatodea_contig10546.384.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at S-dermatodea_contig10546:277..1143+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCGGCATCGCCCGCCCACTACGGCACCTCGCCCAGCTTCGGCGTTAT
CACAGACGTCGGCGTCAGGCGAACCTTGGTGGACCTGATCTGCACCATGA
ACGCCTCCTTCCCGGACTACGACTTCAGCGGTGTGCGCCCCGACAACTTC
CAGAAGGAGGCTAGCGTCAGCCTCGTGCGAAATAAGATGTCGGCATCGCC
CGCCCACTACGGCACCTCGCCCAGCTTCGGCGTTATCACAGACGTCGGCG
TCAGGCGAACCTTGGTGGACCTGATCTGCACCATGAACGCCTCCTTCCCG
GACTACGACTTCAGCGGTGTGCGCCCCGACAACTTCCAGAAGGAGGCTAG
CGTCAGCCTCGTGCGAAATAAGGTTAACGCAGCATTGGCGGAGATCTCGG
TGATCCACAACAAGATCTTCCTGGAGAGCTTCTGGGCCGACCTGGACGAG
GTGATGAAGCTGAAGGACTGCGAGGTAAAAACAACTAGATTTGAATGAGT
TAACGCAGCATTGGCGGAGATCTCGGTGATCCACAACAAGATCTTCCTGG
AGAGCTTCTGGGCCGACCTGGACGAGGTGATGAAGCTGAAGGACTGCGAG
GTAAAAACAACTAGATTTGAATGA
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