mRNA_S-dermatodea_contig10543.383.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10543.383.1
Unique NamemRNA_S-dermatodea_contig10543.383.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10543.383.1 vs. uniprot
Match: A0A6H5JDN4_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN4_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 3.800e-8
Identity = 33/58 (56.90%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:   19 RGAFGVSRKVSISDDDLRKAVTETSGFVLVTK-LRGRMDGIKAHARRLSNELG-ATVA 186
            R A     +V++SD+D+R AVTE  GFVLV+K ++G++DG+K  ARRLS+ELG ATVA
Sbjct:  675 RWADSARERVAVSDEDVRAAVTEAPGFVLVSKKIKGKVDGMKVKARRLSSELGGATVA 732
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BLAST of mRNA_S-dermatodea_contig10543.383.1 vs. uniprot
Match: D8LKE4_ECTSI (Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKE4_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.800e-7
Identity = 35/66 (53.03%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:   22 GAFGVS--RKVSISDDDLRKAVTETSGFVLVTK-LRGRMDGIKAHARRLSNELG-ATVAAASALSG 207
            G +G S   +V++SD D+R AVTE  GFVLV K ++G++DG+K  ARRLS+ELG ATVA+ + + G
Sbjct:  571 GPWGDSARERVAVSDADVRAAVTEAPGFVLVAKKIKGKVDGMKVKARRLSSELGGATVASLAGVKG 636
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10543.383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JDN4_9PHAE3.800e-856.90Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LKE4_ECTSI1.800e-753.03Ca2+/calmodulin-dependent protein kinase kinase be... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10543contigS-dermatodea_contig10543:6768..7535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size268
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924162.5909898-CDS-S-dermatodea_contig10543:6768..69271622924162.5909898-CDS-S-dermatodea_contig10543:6768..6927Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10543 6769..6927 -
1694079060.5262716-CDS-S-dermatodea_contig10543:6768..69271694079060.5262716-CDS-S-dermatodea_contig10543:6768..6927Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10543 6769..6927 -
1622924162.6078436-CDS-S-dermatodea_contig10543:7427..75351622924162.6078436-CDS-S-dermatodea_contig10543:7427..7535Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10543 7428..7535 -
1694079060.5369337-CDS-S-dermatodea_contig10543:7427..75351694079060.5369337-CDS-S-dermatodea_contig10543:7427..7535Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10543 7428..7535 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10543.383.1prot_S-dermatodea_contig10543.383.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10543 6769..7535 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10543.383.1

>prot_S-dermatodea_contig10543.383.1 ID=prot_S-dermatodea_contig10543.383.1|Name=mRNA_S-dermatodea_contig10543.383.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=89bp
IAAGDVRGAFGVSRKVSISDDDLRKAVTETSGFVLVTKLRGRMDGIKAHA
RRLSNELGATVAAASALSGHGGVTRTGDTEASDEAEPVG
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mRNA from alignment at S-dermatodea_contig10543:6768..7535-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10543.383.1 ID=mRNA_S-dermatodea_contig10543.383.1|Name=mRNA_S-dermatodea_contig10543.383.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=768bp|location=Sequence derived from alignment at S-dermatodea_contig10543:6768..7535- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATCGCTGCTGGCGACGTTCGCGGCGCTTTCGGGGTGTCTCGCAAGGTCTC
CATTAGCGACGACGACCTTAGGAAGGCGGTGACGGAGACATCCGGTTTTG
TCCTCGTGGTGAGACGGGATGTCATTTGCGACATCGGGCGTCCGGTCGGA
ATCGACGAACGTGTACCTGCGCGATGCGCACTTCGTAGGGTTTCACGGTT
GTGCGGGTTGCGTGATTTGGACGCAGCGGCAATTGTGCGCTGTGTCGGCG
CATGCGATCAATTCCCGCCGTAGGCACTAGATGGAAAGGGCGCACGAACT
CGAACTAGACAACCCGGGAGGCGGTGCAATCGAAGCAGTGTTGTCTATGA
TACAGCTATCATACAATAGCCATGATTGCGATTCACGGGGGTAGGTTTGG
ATCGAAGCTGCACATGAGCAACACCTGTTGCCTGCATGATCGTCGTTGCT
ACTGCGGGTCCTGAACAGTCGCTGGTTCTCCCGTCGAGTGCTGACCGACG
ATGCTTCCGCCGGTTCCCCTCACCTGAAATATCTGTACAAATCCTCGTCA
CCTCTGCGTTTTTCCTCGCGTTCATGTATCGTTCACCGCAACATGCGTGC
GCTTATAGACAAAGCTACGGGGAAGGATGGACGGCATCAAGGCGCACGCA
AGACGCCTGTCCAACGAACTCGGAGCAACGGTGGCGGCGGCGTCGGCACT
TAGCGGTCACGGAGGCGTTACTCGCACGGGTGACACGGAGGCTTCTGACG
AGGCAGAGCCCGTAGGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10543:6768..7535-

>mRNA_S-dermatodea_contig10543.383.1 ID=mRNA_S-dermatodea_contig10543.383.1|Name=mRNA_S-dermatodea_contig10543.383.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at S-dermatodea_contig10543:6768..7535- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATCGCTGCTGGCGACGTTCGCGGCGCTTTCGGGGTGTCTCGCAAGGTCTC
CATTAGCGACGACGACCTTAGGAAGGCGGTGACGGAGACATCCGGTTTTG
TCCTCGTGATCGCTGCTGGCGACGTTCGCGGCGCTTTCGGGGTGTCTCGC
AAGGTCTCCATTAGCGACGACGACCTTAGGAAGGCGGTGACGGAGACATC
CGGTTTTGTCCTCGTGACAAAGCTACGGGGAAGGATGGACGGCATCAAGG
CGCACGCAAGACGCCTGTCCAACGAACTCGGAGCAACGGTGGCGGCGGCG
TCGGCACTTAGCGGTCACGGAGGCGTTACTCGCACGGGTGACACGGAGGC
TTCTGACGAGGCAGAGCCCGTAGGGACAAAGCTACGGGGAAGGATGGACG
GCATCAAGGCGCACGCAAGACGCCTGTCCAACGAACTCGGAGCAACGGTG
GCGGCGGCGTCGGCACTTAGCGGTCACGGAGGCGTTACTCGCACGGGTGA
CACGGAGGCTTCTGACGAGGCAGAGCCCGTAGGG
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