mRNA_S-dermatodea_contig10543.382.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10543.382.1
Unique NamemRNA_S-dermatodea_contig10543.382.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10543.382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10543contigS-dermatodea_contig10543:5886..6832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size947
Cds size489
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924162.40786-CDS-S-dermatodea_contig10543:5885..63741622924162.40786-CDS-S-dermatodea_contig10543:5885..6374Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10543 5886..6374 +
1694079060.42615-CDS-S-dermatodea_contig10543:5885..63741694079060.42615-CDS-S-dermatodea_contig10543:5885..6374Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10543 5886..6374 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924162.4201524-UTR-S-dermatodea_contig10543:6374..68321622924162.4201524-UTR-S-dermatodea_contig10543:6374..6832Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10543 6375..6832 +
1694079060.4356086-UTR-S-dermatodea_contig10543:6374..68321694079060.4356086-UTR-S-dermatodea_contig10543:6374..6832Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10543 6375..6832 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10543.382.1prot_S-dermatodea_contig10543.382.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10543 5886..6374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10543.382.1

>prot_S-dermatodea_contig10543.382.1 ID=prot_S-dermatodea_contig10543.382.1|Name=mRNA_S-dermatodea_contig10543.382.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=163bp
MATKKLRCRSFRQWTSFYRQPLGRNRQSRALSEHDEPCSTENKTLEKRCL
TATMTQVFLPDSSKAAGLHLEFRDTPGSFIFFHFDSIQYNYYCNDLIQTV
HAWILCETKFLVRHYRPEVIYNCRARGGVFLIPPTRQQALESVVHHVPRI
TYGRRNVPGDDK*
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mRNA from alignment at S-dermatodea_contig10543:5886..6832+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10543.382.1 ID=mRNA_S-dermatodea_contig10543.382.1|Name=mRNA_S-dermatodea_contig10543.382.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=947bp|location=Sequence derived from alignment at S-dermatodea_contig10543:5886..6832+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGACAAAAAAACTGCGGTGTAGAAGCTTTAGACAATGGACATCATT
TTACCGTCAACCACTCGGGAGAAACCGACAAAGCAGGGCGCTATCAGAGC
ACGACGAACCGTGCTCTACGGAGAACAAAACACTCGAGAAACGCTGTCTT
ACTGCTACAATGACGCAAGTTTTCCTGCCCGACTCTTCGAAGGCTGCAGG
CCTCCACTTAGAGTTCAGAGACACACCTGGAAGCTTTATCTTTTTCCATT
TTGACAGCATCCAGTACAACTACTACTGCAACGACCTCATCCAAACGGTC
CACGCGTGGATTCTATGCGAAACAAAATTCCTGGTAAGACACTACAGGCC
TGAAGTTATTTACAACTGCCGCGCGCGGGGAGGGGTCTTTCTCATCCCAC
CGACTCGGCAACAAGCACTTGAGTCAGTCGTTCATCACGTACCACGTATC
ACGTATGGCAGGAGAAACGTGCCTGGCGACGACAAGTAAACTGAGTTACT
CGACCCCCCCCCCTCAGCCGAAACACACGCTGGTTTGACAAATGTTATGC
TATGTTGGGCACGAAACACCGCCCACACAAATTGTACGCATGTCACCCTC
CGGACTCCTCCCGTTCTCGCACTCAGGGCCCGGCGCGAACAAGAAACCTC
TACAAAAAACAAAACGGTCAGCTCAACGGGAGGCTTGAGAAGGTCGAAAG
TTTACTATCCCGTACCGTAACCAAATGTCGAGCTGCACTCTGGGGGCAGC
AAAATCTATCTGGCCACCGACCACACCTATCGCAAGCGCCAAACGCCATC
TCCCTGCGCATCGCGCAAGCTCCCTCCGGGTGTCAGCTTGCGATGCAAAC
CGTCGATGAATTTCGACGGCGATTTCGGAGCTGCCCTACGGGCTCTGCCT
CGTCAGAAGCCTCCGTGTCACCCGTGCGAGTAACGCCTCCGTGACCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10543:5886..6832+

>mRNA_S-dermatodea_contig10543.382.1 ID=mRNA_S-dermatodea_contig10543.382.1|Name=mRNA_S-dermatodea_contig10543.382.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=978bp|location=Sequence derived from alignment at S-dermatodea_contig10543:5886..6832+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGACAAAAAAACTGCGGTGTAGAAGCTTTAGACAATGGACATCATT
TTACCGTCAACCACTCGGGAGAAACCGACAAAGCAGGGCGCTATCAGAGC
ACGACGAACCGTGCTCTACGGAGAACAAAACACTCGAGAAACGCTGTCTT
ACTGCTACAATGACGCAAGTTTTCCTGCCCGACTCTTCGAAGGCTGCAGG
CCTCCACTTAGAGTTCAGAGACACACCTGGAAGCTTTATCTTTTTCCATT
TTGACAGCATCCAGTACAACTACTACTGCAACGACCTCATCCAAACGGTC
CACGCGTGGATTCTATGCGAAACAAAATTCCTGGTAAGACACTACAGGCC
TGAAGTTATTTACAACTGCCGCGCGCGGGGAGGGGTCTTTCTCATCCCAC
CGACTCGGCAACAAGCACTTGAGTCAGTCGTTCATCACGTACCACGTATC
ACGTATGGCAGGAGAAACGTGCCTGGCGACGACAAGTAAATGGCGACAAA
AAAACTGCGGTGTAGAAGCTTTAGACAATGGACATCATTTTACCGTCAAC
CACTCGGGAGAAACCGACAAAGCAGGGCGCTATCAGAGCACGACGAACCG
TGCTCTACGGAGAACAAAACACTCGAGAAACGCTGTCTTACTGCTACAAT
GACGCAAGTTTTCCTGCCCGACTCTTCGAAGGCTGCAGGCCTCCACTTAG
AGTTCAGAGACACACCTGGAAGCTTTATCTTTTTCCATTTTGACAGCATC
CAGTACAACTACTACTGCAACGACCTCATCCAAACGGTCCACGCGTGGAT
TCTATGCGAAACAAAATTCCTGGTAAGACACTACAGGCCTGAAGTTATTT
ACAACTGCCGCGCGCGGGGAGGGGTCTTTCTCATCCCACCGACTCGGCAA
CAAGCACTTGAGTCAGTCGTTCATCACGTACCACGTATCACGTATGGCAG
GAGAAACGTGCCTGGCGACGACAAGTAA
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